BAC Information

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BAC

Clone NameB6Ng01-020J03
Chromosome1 (Build37)
Map Location 74,860,316 - 75,010,939
singlet/doubletdoublet
Overlap geneLOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a
Downstream geneNhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020J03.bB6Ng01-020J03.g
ACCDH853333DH853334
length680589
definitionDH853333|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J03, 5' end.DH853334|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,010,264 - 75,010,939)(74,860,316 - 74,860,903)
sequence
gaattcctagagctcaaggtgacagagagagaggtctgtgcttctgtact
ctggactggctagaccaagatctttgcaggtcggctggcaaggctcatcc
cagggcacccggagaacactccttgttcatttaaggctcccttagctccc
aatcctttattaccactacaggtgggagcagtctggagagtctcgggagc
ccctgcttatgctgcagagatggtggagatgggagggacagggacgaaga
gttgcacctctcctacccggctgttggttctccatcattcctgatgttgc
cagggacaacttcttctcttcactcactctgtcttttattttctccgact
cacaaaactacaaagatttgctctacagagtttaagggaagcctaactcc
tctaatgacgttgacctgacatgagctaacctctgctaaccccgtcatta
ctcattaatgtaccctatgccaacaggcatgtttcttgtgtgctttggtt
tctgcttttcatatgaacgtttcgaactagctggaaatgtcaccatgatg
atgttatggtactaaaggcacaactatgttaacagtcttttaagcaatca
aaatgtattttttctaggttcttctctgagtaatctgtctttttgtaata
ttcttttggtgatgggaggagcccgtttca
gaattctcttgcatggaatggaggatctgatgctgagcagctaaaggccc
cacacacaggcttttggacacaccattggggtcctccaccgtcttccata
atcactctcattctctcccttgcacagttctctcttcagttactctgaag
ctcaactgtgtgtccttccctgtgctgtccctgcctgcctcagccccttc
agcagctggtctcctatgacccatgcctcacacctatgtgctgtttcctc
cgtttggatctgggctgatcctaggctctgggctctgcctatgaggtggc
taggttggacccattctatttctcatttcccacatgaccggaacaaaaaa
aaatggcttttctggcctctctatgtgcttctgcaatatgcaaataaaag
cacccatctcccaaaactattaataatatttttaaagaattatttatttt
atgtatatgagtacactgttgcagtcttcagacacaccagaagagggcat
cagatcccaatacagatctctctagccctttaataataattttattctgt
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75010264_75010939
seq2: B6Ng01-020J03.b_48_727 (reverse)

seq1  TGAAACGGGCTCCTCCCAT--CCCAAAGACTATTAC-AAAAGACAGATTA  47
      |||||||||||||||||||  || ||||| |||||| |||||||||||||
seq2  TGAAACGGGCTCCTCCCATCACCAAAAGAATATTACAAAAAGACAGATTA  50

seq1  CTCAGAGAAGAACCTAG-AAAAATACATTTTGATTGCTTAAAAGACTGTT  96
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAGAACCTAGAAAAAATACATTTTGATTGCTTAAAAGACTGTT  100

seq1  AACATAGTTGTGCCTTTAGTACCATAACATCATCATGGTGACATTTCCAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTTGTGCCTTTAGTACCATAACATCATCATGGTGACATTTCCAG  150

seq1  CTAGTTCGAAACGTTCATATGAAAAGCAGAAACCAAAGCACACAAGAAAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCGAAACGTTCATATGAAAAGCAGAAACCAAAGCACACAAGAAAC  200

seq1  ATGCCTGTTGGCATAGGGTACATTAATGAGTAATGACGGGGTTAGCAGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTTGGCATAGGGTACATTAATGAGTAATGACGGGGTTAGCAGAG  250

seq1  GTTAGCTCATGTCAGGTCAACGTCATTAGAGGAGTTAGGCTTCCCTTAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTCATGTCAGGTCAACGTCATTAGAGGAGTTAGGCTTCCCTTAAA  300

seq1  CTCTGTAGAGCAAATCTTTGTAGTTTTGTGAGTCGGAGAAAATAAAAGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGAGCAAATCTTTGTAGTTTTGTGAGTCGGAGAAAATAAAAGAC  350

seq1  AGAGTGAGTGAAGAGAAGAAGTTGTCCCTGGCAACATCAGGAATGATGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTGAAGAGAAGAAGTTGTCCCTGGCAACATCAGGAATGATGGA  400

seq1  GAACCAACAGCCGGGTAGGAGAGGTGCAACTCTTCGTCCCTGTCCCTCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACAGCCGGGTAGGAGAGGTGCAACTCTTCGTCCCTGTCCCTCCC  450

seq1  ATCTCCACCATCTCTGCAGCATAAGCAGGGGCTCCCGAGACTCTCCAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACCATCTCTGCAGCATAAGCAGGGGCTCCCGAGACTCTCCAGAC  500

seq1  TGCTCCCACCTGTAGTGGTAATAAAGGATTGGGAGCTAAGGGAGCCTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCACCTGTAGTGGTAATAAAGGATTGGGAGCTAAGGGAGCCTTAA  550

seq1  ATGAACAAGGAGTGTTCTCCGGGTGCCCTGGGATGAGCCTTGCCAGCCGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGGAGTGTTCTCCGGGTGCCCTGGGATGAGCCTTGCCAGCCGA  600

seq1  CCTGCAAAGATCTTGGTCTAGCCAGTCCAGAGTACAGAAGCACAGACCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAGATCTTGGTCTAGCCAGTCCAGAGTACAGAAGCACAGACCTC  650

seq1  TCTCTCTGTCACCTTGAGCTCTAGGAATTC  676
      ||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCACCTTGAGCTCTAGGAATTC  680

seq1: chr1_74860316_74860903
seq2: B6Ng01-020J03.g_65_652

seq1  GAATTCTCTTGCATGGAATGGAGGATCTGATGCTGAGCAGCTAAAGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCATGGAATGGAGGATCTGATGCTGAGCAGCTAAAGGCCC  50

seq1  CACACACAGGCTTTTGGACACACCATTGGGGTCCTCCACCGTCTTCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGGCTTTTGGACACACCATTGGGGTCCTCCACCGTCTTCCATA  100

seq1  ATCACTCTCATTCTCTCCCTTGCACAGTTCTCTCTTCAGTTACTCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTCATTCTCTCCCTTGCACAGTTCTCTCTTCAGTTACTCTGAAG  150

seq1  CTCAACTGTGTGTCCTTCCCTGTGCTGTCCCTGCCTGCCTCAGCCCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTGTGTGTCCTTCCCTGTGCTGTCCCTGCCTGCCTCAGCCCCTTC  200

seq1  AGCAGCTGGTCTCCTATGACCCATGCCTCACACCTATGTGCTGTTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGGTCTCCTATGACCCATGCCTCACACCTATGTGCTGTTTCCTC  250

seq1  CGTTTGGATCTGGGCTGATCCTAGGCTCTGGGCTCTGCCTATGAGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGATCTGGGCTGATCCTAGGCTCTGGGCTCTGCCTATGAGGTGGC  300

seq1  TAGGTTGGACCCATTCTATTTCTCATTTCCCACATGACCGGAACAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGACCCATTCTATTTCTCATTTCCCACATGACCGGAACAAAAAA  350

seq1  AAATGGCTTTTCTGGCCTCTCTATGTGCTTCTGCAATATGCAAATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTTTTCTGGCCTCTCTATGTGCTTCTGCAATATGCAAATAAAAG  400

seq1  CACCCATCTCCCAAAACTATTAATAATATTTTTAAAGAATTATTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTCCCAAAACTATTAATAATATTTTTAAAGAATTATTTATTTT  450

seq1  ATGTATATGAGTACACTGTTGCAGTCTTCAGACACACCAGAAGAGGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGAGTACACTGTTGCAGTCTTCAGACACACCAGAAGAGGGCAT  500

seq1  CAGATCCCAATACAGATCTCTCTAGCCCTTTAATAATAATTTTATTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCAATACAGATCTCTCTAGCCCTTTAATAATAATTTTATTCTGT  550

seq1  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGT  588
      |||||||||||||||||||||||||||||||| |||||
seq2  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  588