BAC Information

Click to search

BAC

Clone NameB6Ng01-020N24
Chromosome1 (Build37)
Map Location 32,760,337 - 32,904,759
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N24.bB6Ng01-020N24.g
ACCDH853547DH853548
length1,1521,016
definitionDH853547|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N24, 5' end.DH853548|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,903,597 - 32,904,759)(32,760,337 - 32,761,368)
sequence
gaattctttcttcctgaaaaatagattcttttgatattattttaagatac
tcagtgtaagacttgacctttgactataatgaatattcaaacttagatag
actgatatatttaatttttctgatatatgttgggaagtaaggataaaatt
ttcttgaaattatattatttttgggtttttttgtttttggtttttcaaga
cagggtttctctgtgtagccctggctgtcctggaactcactttgtagagc
aggctggcctcgaactcagaaatccgcctgcctctgccgcccaagtgctg
ggattaaaggtgtgcaccaccacacccgactgaaattatattatttttaa
ggtcacttttttcccagttgtgagcaaaatgtgtccactccaatcctctg
aaaggaaggctcaaagaataattaaagtaggcagggaaattcttcagact
acaatgtatgccttaaacctatgaaagaaagaaaaaaagactgaaggaaa
ggattgacagaaatctgagagactgtagcacatttctgtaaaacctttgg
tcaagccaacatgagtctctaaataaagactgtccacagaagtcctacat
tggacagaaatagcctgtctccagcactcttgccaagctgtcattatttg
taaaccacctagtatgtactctgactaaacttaatggcagatccaaaggt
gtagcaagtagagctatctgccaaccttttccatagcacctgaagaaacc
tttaaatgagccgtgaatacatttactgatcttgctttatgcattttaaa
acacaattgtaacatgcccatacattttcaccccttaatacatgtgatag
tgtaatataaatatttacataattgaaggataagacatacaccttcatta
gtatgaaattcttccagtccacattctcagtaatagatgattgtaacaga
tgtcagtcatgatgtagctgacgggacgatgctaatcagatcctccaggt
acttgattgacatttacatgacagaggtagaacaatgcacgcctgtttca
agagccaccaagaagcattagcaacaattttggggccaggaaatcccaga
aaggttaaaattgaatagttattttggtaccaatagagaacttgggaaat
ca
gaattcagcagaaaagatggagaggttaaagtaatcagtaattgaagagg
aagttagattaggaggaaatcagaagaaagacttttctacgtaatttcac
actgtaggaagaagaccaagtttgctttgtgactgaaaggtgttgggtat
agacccaaaatatgaacaggaagaatgagatatgctctcaagagagtaag
gatcaaatgtgctgttcagtgcagaacacatgtgaaagatttggaaggac
attgagtggcaagcaaaatcatctgactattgtctcctagaactagaaac
tacaagaccccttcatttttccatatatgagaaactactggatactatgt
aaaattagatattttactaacaggcaaaaataatcatctcatttcagaag
gaattttaagtggtttatacattccaaaagcaatcacttttaagtattta
taacatttgcaagaaagcttaatgtttcattttgcccaacagctagatgc
tccattttttaaaaaaagctaaacaaattcaagctgatttaaccaacaca
cactacaggggagcagagagaccttcacaagcacgaattaaaaagcttgg
tataaaagaaaaactcaatgaatttatcatgaggaaaactattaaacaca
gatctgccaaagtcaacttttcatctactataaaagtttgtgttttttcc
tgttgatggtaaatatgaattgacttataatatttttacttaccagaaca
atactgattttcattattgaaatattcaaatggtgactgggttgtcaaat
tcatcaaagaaattatatattgactgtgacacagctttattggtaagtaa
tttcttgcatgtttatccttttgaaattatgaatacaaagtctatatatt
ttaaattgtaagatattttagactaaatatatatatatgtcagatttatg
tagctttgagataataaatcttaatagatccaatgctaacatcagaataa
tgattaccgtgccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_32903597_32904759
seq2: B6Ng01-020N24.b_45_1196 (reverse)

seq1  TGATTTCCAATGTTACTCTATTGTGATCACAAAATAACATTATTTCAATA  50
      |||||||| | ||| ||||||  || |  |||||||||  || ||||  |
seq2  TGATTTCCCAAGTT-CTCTAT--TGGTACCAAAATAAC--TA-TTCA--A  42

seq1  TTTTAACACCTACTAGGATTTTCTGTGGCCCCAAATATTGTTGCTAATGC  100
      ||||||| | | || |||||| |  |||||||||| ||||||||||||||
seq2  TTTTAAC-CTTTCTGGGATTTCC--TGGCCCCAAA-ATTGTTGCTAATGC  88

seq1  -TCTGTGTGTGCTCTTG-AACA-GCGTGCA-TGTTCTACCTCTGTCATGT  146
       |||  ||| ||||||| |||| ||||||| |||||||||||||||||||
seq2  TTCTTGGTG-GCTCTTGAAACAGGCGTGCATTGTTCTACCTCTGTCATGT  137

seq1  AAAATGTTCATCAAGTACCTGGGAGATCTGATTAGCATCGTCCCCGTCAG  196
       ||||||  |||||||||||||  ||||||||||||||||| ||||||||
seq2  -AAATGTCAATCAAGTACCTGGAGGATCTGATTAGCATCGT-CCCGTCAG  185

seq1  CTACATCATGACTGACATCTGTTACAATCATCTATTACTGAGAATGTGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCATGACTGACATCTGTTACAATCATCTATTACTGAGAATGTGGA  235

seq1  CTGGAAGAATTTCATACTATTGAAGGTGTATGTCTTATCCTTCAATTATG  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGAAGAATTTCATACTAATGAAGGTGTATGTCTTATCCTTCAATTATG  285

seq1  TAAATATTTATATTACACTATCACATGTATTAAGGGGTGAAAATGTATGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTATATTACACTATCACATGTATTAAGGGGTGAAAATGTATGG  335

seq1  GCATGTTACAATTGTGTTTTAAAATGCATAAAGCAAGATCAGTAAATGTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTACAATTGTGTTTTAAAATGCATAAAGCAAGATCAGTAAATGTA  385

seq1  TTCACGGCTCATTTAAAGGTTTCTTCAGGTGCTATGGAAAAGGTTGGCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGCTCATTTAAAGGTTTCTTCAGGTGCTATGGAAAAGGTTGGCAG  435

seq1  ATAGCTCTACTTGCTACACCTTTGGATCTGCCATTAAGTTTAGTCAGAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTACTTGCTACACCTTTGGATCTGCCATTAAGTTTAGTCAGAGT  485

seq1  ACATACTAGGTGGTTTACAAATAATGACAGCTTGGCAAGAGTGCTGGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTAGGTGGTTTACAAATAATGACAGCTTGGCAAGAGTGCTGGAGA  535

seq1  CAGGCTATTTCTGTCCAATGTAGGACTTCTGTGGACAGTCTTTATTTAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATTTCTGTCCAATGTAGGACTTCTGTGGACAGTCTTTATTTAGA  585

seq1  GACTCATGTTGGCTTGACCAAAGGTTTTACAGAAATGTGCTACAGTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATGTTGGCTTGACCAAAGGTTTTACAGAAATGTGCTACAGTCTCT  635

seq1  CAGATTTCTGTCAATCCTTTCCTTCAGTCTTTTTTTCTTTCTTTCATAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGTCAATCCTTTCCTTCAGTCTTTTTTTCTTTCTTTCATAGG  685

seq1  TTTAAGGCATACATTGTAGTCTGAAGAATTTCCCTGCCTACTTTAATTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCATACATTGTAGTCTGAAGAATTTCCCTGCCTACTTTAATTAT  735

seq1  TCTTTGAGCCTTCCTTTCAGAGGATTGGAGTGGACACATTTTGCTCACAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGCCTTCCTTTCAGAGGATTGGAGTGGACACATTTTGCTCACAA  785

seq1  CTGGGAAAAAAGTGACCTTAAAAATAATATAATTTCAGTCGGGTGTGGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAAAAGTGACCTTAAAAATAATATAATTTCAGTCGGGTGTGGTG  835

seq1  GTGCACACCTTTAATCCCAGCACTTGGGCGGCAGAGGCAGGCGGATTTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACCTTTAATCCCAGCACTTGGGCGGCAGAGGCAGGCGGATTTCT  885

seq1  GAGTTCGAGGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGC  935

seq1  TACACAGAGAAACCCTGTCTTGAAAAACCAAAAACAAAAAAACCCAAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTTGAAAAACCAAAAACAAAAAAACCCAAAAA  985

seq1  TAATATAATTTCAAGAAAATTTTATCCTTACTTCCCAACATATATCAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATTTCAAGAAAATTTTATCCTTACTTCCCAACATATATCAGAA  1035

seq1  AAATTAAATATATCAGTCTATCTAAGTTTGAATATTCATTATAGTCAAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATATATCAGTCTATCTAAGTTTGAATATTCATTATAGTCAAAG  1085

seq1  GTCAAGTCTTACACTGAGTATCTTAAAATAATATCAAAAGAATCTATTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTCTTACACTGAGTATCTTAAAATAATATCAAAAGAATCTATTTT  1135

seq1  TCAGGAAGAAAGAATTC  1163
      |||||||||||||||||
seq2  TCAGGAAGAAAGAATTC  1152

seq1: chr1_32760337_32761368
seq2: B6Ng01-020N24.g_66_1081

seq1  GAATTCAGCAGAAAAGATGGAGAGGTTAAAGTAATCAGTAATTGAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAAAAGATGGAGAGGTTAAAGTAATCAGTAATTGAAGAGG  50

seq1  AAGTTAGATTAGGAGGAAATCAGAAGAAAGACTTTTCTACGTAATTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGATTAGGAGGAAATCAGAAGAAAGACTTTTCTACGTAATTTCAC  100

seq1  ACTGTAGGAAGAAGACCAAGTTTGCTTTGTGACTGAAAGGTGTTGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGAAGAAGACCAAGTTTGCTTTGTGACTGAAAGGTGTTGGGTAT  150

seq1  AGACCCAAAATATGAACAGGAAGAATGAGATATGCTCTCAAGAGAGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAAAATATGAACAGGAAGAATGAGATATGCTCTCAAGAGAGTAAG  200

seq1  GATCAAATGTGCTGTTCAGTGCAGAACACATGTGAAAGATTTGGAAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATGTGCTGTTCAGTGCAGAACACATGTGAAAGATTTGGAAGGAC  250

seq1  ATTGAGTGGCAAGCAAAATCATCTGACTATTGTCTCCTAGAACTAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGGCAAGCAAAATCATCTGACTATTGTCTCCTAGAACTAGAAAC  300

seq1  TACAAGACCCCTTCATTTTTCCATATATGAGAAACTACTGGATACTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGACCCCTTCATTTTTCCATATATGAGAAACTACTGGATACTATGT  350

seq1  AAAATTAGATATTTTACTAACAGGCAAAAATAATCATCTCATTTCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGATATTTTACTAACAGGCAAAAATAATCATCTCATTTCAGAAG  400

seq1  GAATTTTAAGTGGTTTATACATTCCAAAAGCAATCACTTTTAAGTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAAGTGGTTTATACATTCCAAAAGCAATCACTTTTAAGTATTTA  450

seq1  TAACATTTGCAAGAAAGCTTAATGTTTCATTTTGCCCAACAGCTAGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGCAAGAAAGCTTAATGTTTCATTTTGCCCAACAGCTAGATGC  500

seq1  TCCATTTTTTAAAAAAAGCTAAACAAATTCAAGCTGATTTAACCAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTTAAAAAAAGCTAAACAAATTCAAGCTGATTTAACCAACACA  550

seq1  CACTACAGGGGAGCAGAGAGACCTTCACAAGCACGAATTAAAAAGCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGGGGAGCAGAGAGACCTTCACAAGCACGAATTAAAAAGCTTGG  600

seq1  TATAAAAGAAAAACTCAATGAATTTATCATGAGGAAAACTATTAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAAAAACTCAATGAATTTATCATGAGGAAAACTATTAAACACA  650

seq1  GATCTGCCAAAGTCAACTTTTCATCTACTATAAAAGTTTGTGTTTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCAAAGTCAACTTTTCATCTACTATAAAAGTTTGTGTTTTTTCC  700

seq1  TGTTGATGGTAAATATGAATTGACTTATAATATTTTTACTTACCAGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGGTAAATATGAATTGACTTATAATATTTTTACTTACCAGAACA  750

seq1  ATACTGATTTTCATTATTGAAATATTCAAATGGTGACTGGGTTGTCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATTTTCATTATTGAAATATTCAAATGGTGACTGGGTTGTCAAAT  800

seq1  TCATCAAAGAAATTATATATTGACTGTGACACAGCTTTATTGGTAAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAGAAATTATATATTGACTGTGACACAGCTTTATTGGTAAGTAA  850

seq1  TTTCTTGCATGTTTATCCTTTTGAAATTATGAATAACAAAGTCTATATAA  900
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TTTCTTGCATGTTTATCCTTTTGAAATTATGAAT-ACAAAGTCTATAT-A  898

seq1  TTTTAAATTGTAAGATATTTTAGACTAAATATATATATATGTCAGGATTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTAAATTGTAAGATATTTTAGACTAAATATATATATATGTCA-GATTT  947

seq1  ATGGTAGGCTTTGGAGATAATAAAATCTTAAATAGTATTCCAATGCTATA  1000
      || ||| ||||| |||||||| ||||||| |||||   |||||||||| |
seq2  AT-GTA-GCTTT-GAGATAAT-AAATCTT-AATAG--ATCCAATGCTA-A  989

seq1  CATTCAGGAATAAATGATTACACGTGCACATT  1032
      || ||| |||| ||||||||| ||||| ||||
seq2  CA-TCA-GAAT-AATGATTAC-CGTGC-CATT  1016