BAC Information

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BAC

Clone NameB6Ng01-020O08
Chromosome1 (Build37)
Map Location 102,541,540 - 102,631,177
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O08.bB6Ng01-020O08.g
ACCDH853563DH853564
length1,016826
definitionDH853563|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O08, 5' end.DH853564|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,630,159 - 102,631,177)(102,541,540 - 102,542,366)
sequence
gaattctttgtttaggcctgtatcccatttttcatagtgttatttctaat
atctgttgggataggggttctctataacttaatgcattaactttctgtct
cttactttcttgcatttaagattaaggcctaaatttctttattcccccat
gcatgtttaaaagcatttaaagcaattaccatttttttccttctatgctt
gaacagatagcattttcttgacttgtatttttccctgctaaggaaattaa
tatctcttaattattatttgttgagatagtatttctccctatttccatga
ctttgtttcctccatttgagataaattccctaatctcccctaaaacggcc
atacaactccagtaagttatatgttttcttgaccacatagaaaatggcaa
tgtcagaaaacattacattgctttaaccaatacacacagcaagacactga
accattcctacagtcccaacaagtggcacaagtgatagaggaaactaata
cagtctcaaacaataaccaaaaaaaaaaaaacccaaaaaacaaaaacaaa
aacaaacaaaaagcatatcccttaacagtaaaagtaaaaaaaataataat
aataatttttgagctgacaacacatccataaatttccaactggaactata
attgaaagtaaaggcaattggtaacatcacaaaacagaattcttatggtc
catagttaatattcttatcctgaccgtgttaagatagaggaattgatatt
cctaaatatccatataaagagtcatttatcaactttcacacatttagtat
gtgggtcaatgtcaaacaccagttagtccaaaataaatttcacaaattca
agataaaaccctgttttgcataaagaactcacaatgaaacacatgagagt
cctactggaaatataagccaaggaggatttagtttcctctgtaaaagaga
catgaaaggttaactctcaaacataaatctatggagccattactaatgca
caatcatcactttgga
gaattcaggaagcagaaggggatgaatggtagttcccagcttactttccc
ctttttattcagtccaggtccccagcctattgaatactgccacttctatt
acagtgggtctttccagctcattaacccaatctagaaactccctcacaga
cctgcctagggctctgtttccattgtgattgtagatcccattacaccaac
aggactaacttcatcacatctgagcttaggagtctgctgggtcattgctg
ttcagagtcctaacttcagctggtactggttttttgttattgttgttgtt
gttgtttgtttgtttgtttttgtttttttgtttttttgttcctagaaaat
gaaccacactgggtggacatggtcagatggcccagcagtttagaatgctc
ttggagttgatctgagcttggtatccagaatcatatggggtgtttcacaa
actccagctccaaaagcttctatccaaaatcttctggtccctgcaggtcc
ctgtagtcatgtatgcaaatacaattaaaaataaaggaaaatctgtagaa
actgagctctctggctgtgtgatctgtgatatgggtttagctaagactgt
ggtggtagtaaaggagaaggaagatttgagaagaaattcagagaatatga
caggtatggcttaagtgacagattagctgtggaggtgaaaacttaaagat
acatattaatttcataatgtatttgtagatttttacatatacaatataat
aataatagtaggaagagatcatcaccccaacttaatgatcattaacatac
tcctgtcttattttgctctattgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102630159_102631177
seq2: B6Ng01-020O08.b_46_1061 (reverse)

seq1  TCCAAAGTGATGATTTGTGCATTAGGTAATGGCTCCATAGATTTATGTTT  50
      ||||||||||||| |||||||||| |||||||||||||||||||||| ||
seq2  TCCAAAGTGATGA-TTGTGCATTA-GTAATGGCTCCATAGATTTATG-TT  47

seq1  TGAGAGTTAACCTTTCATGTCTCTTTTACAGAGGAAACTAAATCCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTAACCTTTCATGTCTCTTTTACAGAGGAAACTAAATCCTCCTT  97

seq1  GGCTTATATTTCCAGTAGGACTCTCATGTGTTTCATTGTGAGTTCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATATTTCCAGTAGGACTCTCATGTGTTTCATTGTGAGTTCTTTAT  147

seq1  GCAAAACAGGGTTTTATCTTGAATTTGTGAAATTTATTTTGGACTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACAGGGTTTTATCTTGAATTTGTGAAATTTATTTTGGACTAACTG  197

seq1  GTGTTTGACATTGACCCACATACTAAATGTGTGAAAGTTGATAAATGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGACATTGACCCACATACTAAATGTGTGAAAGTTGATAAATGACT  247

seq1  CTTTATATGGATATTTAGGAATATCAATTCCTCTATCTTAACACGGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGGATATTTAGGAATATCAATTCCTCTATCTTAACACGGTCAG  297

seq1  GATAAGAATATTAACTATGGACCATAAGAATTCTGTTTTGTGATGTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAATATTAACTATGGACCATAAGAATTCTGTTTTGTGATGTTACC  347

seq1  AATTGCCTTTACTTTCAATTATAGTTCCAGTTGGAAATTTATGGATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTTTACTTTCAATTATAGTTCCAGTTGGAAATTTATGGATGTGT  397

seq1  TGTCAGCTCAAAAATTATTATTATTATTTTTTTTACTTTTACTGTTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTCAAAAATTATTATTATTATTTTTTTTACTTTTACTGTTAAGG  447

seq1  GATATGCTTTTTGTTTGTTTTTGTTTTTGTTTTTTGGGTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTTTTTGTTTGTTTTTGTTTTTGTTTTTTGGGTTTTTTTTTTTT  497

seq1  TGGTTATTGTTTGAGACTGTATTAGTTTCCTCTATCACTTGTGCCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTGTTTGAGACTGTATTAGTTTCCTCTATCACTTGTGCCACTTG  547

seq1  TTGGGACTGTAGGAATGGTTCAGTGTCTTGCTGTGTGTATTGGTTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTGTAGGAATGGTTCAGTGTCTTGCTGTGTGTATTGGTTAAAGC  597

seq1  AATGTAATGTTTTCTGACATTGCCATTTTCTATGTGGTCAAGAAAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATGTTTTCTGACATTGCCATTTTCTATGTGGTCAAGAAAACATA  647

seq1  TAACTTACTGGAGTTGTATGGCCGTTTTAGGGGAGATTAGGGAATTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACTGGAGTTGTATGGCCGTTTTAGGGGAGATTAGGGAATTTATC  697

seq1  TCAAATGGAGGAAACAAAGTCATGGAAATAGGGAGAAATACTATCTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGAGGAAACAAAGTCATGGAAATAGGGAGAAATACTATCTCAAC  747

seq1  AAATAATAATTAAGAGATATTAATTTCCTTAGCAGGGAAAAATACAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATTAAGAGATATTAATTTCCTTAGCAGGGAAAAATACAAGTC  797

seq1  AAGAAAATGCTATCTGTTCAAGCATAGAAGGAAAAAAATGGTAATTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGCTATCTGTTCAAGCATAGAAGGAAAAAAATGGTAATTGCTT  847

seq1  TAAATGCTTTTAAACATGCATGGGGGAATAAAGAAATTTAGGCCTTAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTTTTAAACATGCATGGGGGAATAAAGAAATTTAGGCCTTAATC  897

seq1  TTAAATGCAAGAAAGTAAGAGACAGAAAGTTAATGCATTAAGTTATAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCAAGAAAGTAAGAGACAGAAAGTTAATGCATTAAGTTATAGAG  947

seq1  AACCCCTATCCCAACAGATATTAGAAATAACACTATGAAAAATGGGATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTATCCCAACAGATATTAGAAATAACACTATGAAAAATGGGATAC  997

seq1  AGGCCTAAACAAAGAATTC  1019
      |||||||||||||||||||
seq2  AGGCCTAAACAAAGAATTC  1016

seq1: chr1_102541540_102542366
seq2: B6Ng01-020O08.g_68_893

seq1  GAATTCAGGAAGCAGAAGGGGATGAATGGTAGTTCCCAGCTTACTTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAGCAGAAGGGGATGAATGGTAGTTCCCAGCTTACTTTCCC  50

seq1  CTTTTTATTCAGTCCAGGTCCCCAGCCTATTGAATACTGCCACTTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTCAGTCCAGGTCCCCAGCCTATTGAATACTGCCACTTCTATT  100

seq1  ACAGTGGGTCTTTCCAGCTCATTAACCCAATCTAGAAACTCCCTCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGTCTTTCCAGCTCATTAACCCAATCTAGAAACTCCCTCACAGA  150

seq1  CCTGCCTAGGGCTCTGTTTCCATTGTGATTGTAGATCCCATTACACCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTAGGGCTCTGTTTCCATTGTGATTGTAGATCCCATTACACCAAC  200

seq1  AGGACTAACTTCATCACATCTGAGCTTAGGAGTCTGCTGGGTCATTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAACTTCATCACATCTGAGCTTAGGAGTCTGCTGGGTCATTGCTG  250

seq1  TTCAGAGTCCTAACTTCAGCTGGTACTGGTTTTTTGTTATTGTTGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCCTAACTTCAGCTGGTACTGGTTTTTTGTTATTGTTGTTGTT  300

seq1  GTTGTTTGTTTGTTTGTTTTTGTTTTTTTGTTTTTTTGTTCCTAGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTTTGTTTGTTTTTGTTTTTTTGTTTTTTTGTTCCTAGAAAAT  350

seq1  GAACCACACTGGGTGGACATGGTCAGATGGCCCAGCAGTTTAGAATGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACACTGGGTGGACATGGTCAGATGGCCCAGCAGTTTAGAATGCTC  400

seq1  TTGGAGTTGATCTGAGCTTGGTATCCAGAATCATATGGGGTGTTTCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGATCTGAGCTTGGTATCCAGAATCATATGGGGTGTTTCACAA  450

seq1  ACTCCAGCTCCAAAAGCTTCTATCCAAAATCTTCTGGTCCCTGCAGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCTCCAAAAGCTTCTATCCAAAATCTTCTGGTCCCTGCAGGTCC  500

seq1  CTGTAGTCATGTATGCAAATACAATTAAAAATAAAGGAAAATCTGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCATGTATGCAAATACAATTAAAAATAAAGGAAAATCTGTAGAA  550

seq1  ACTGAGCTCTCTGGCTGTGTGATCTGTGATATGGGTTTAGCTAAGACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTCTCTGGCTGTGTGATCTGTGATATGGGTTTAGCTAAGACTGT  600

seq1  GGTGGTAGTAAAGGAGAAGGAAGATTTGAGAAGAAATTCAGAGAATATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGTAAAGGAGAAGGAAGATTTGAGAAGAAATTCAGAGAATATGA  650

seq1  CAGGTATGGCTTAAGTGACAGATTAGCTGTGGAAGGTGAAAACTTAAAGA  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGTATGGCTTAAGTGACAGATTAGCTGTGG-AGGTGAAAACTTAAAGA  699

seq1  TACATATTAATTTCATAATGTAATTGTAGATTTTTACATATACAATAATA  750
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  TACATATTAATTTCATAATGTATTTGTAGATTTTTACATATACAAT-ATA  748

seq1  ATAATAATAGTAGGAAGAGATCAATCACCCCAACTTAATGATCATTAGCA  800
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  ATAATAATAGTAGGAAGAGATC-ATCACCCCAACTTAATGATCATTAACA  797

seq1  TACT-CTGTCTCA-TCTGCTCTATTGAAG  827
      |||| |||||| | | |||||||||||||
seq2  TACTCCTGTCTTATTTTGCTCTATTGAAG  826