BAC Information

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BAC

Clone NameB6Ng01-021B02
Chromosome1 (Build37)
Map Location 128,486,034 - 128,648,558
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021B02.bB6Ng01-021B02.g
ACCDH853679DH853680
length1,075979
definitionDH853679|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B02, 5' end.DH853680|Mus musculus domesticus DNA, BAC clone: B6Ng01-021B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,647,469 - 128,648,558)(128,486,034 - 128,487,028)
sequence
gaattcaacagttaggctagagagccggccagcaagcctcagggctcctt
ccatttctatctccccagtgctgtgactcaggtgtgtgctaccattcctg
gctttttatatgaatcctgggaatcaaacccagatcttcatgagcatgct
gcaagcattttcctgagccatcttcccagaccatgttgagttttttggta
cctgatgacagatagatacattaggttgatttctaaaaggtttggggaag
aggcacagagaagacaaggacttggtcctaaggatatgttcttcctgggt
catgcatttacacgtgtgcctgggcctggtcttagaaaacagtgacaagt
gttctctctgccagtggttgttcaaaatggatgctccacaggcagacccg
gagtctgttcacaggtactccctgacacaggacggctgcccagagaccat
caaagctagtggggaaaatcttgattctgtgtggggaatcaagccatgct
gacttgttctaagagaatcacagactttcctgagccctcaacagacaccc
tcccatgggcgcccatgatttatgctgcaccataactccattatactggc
tcagtagaagcagctgtcccctgaagttattaaagctgctcatttcttct
cagcaccccatggtgcggagtttccatagcgagagagaaaatagctgttt
tctttccacgcctctagcctggggttcaatttccacggcctgaataatac
acagagctgcgagaaacagaggcaccagcatttaaatcctccttgaccaa
aggcttggagtatgaataatttgcaatgtaggatttctaaaatatttatt
tatctacatcgtttcattttcatcctgcaaaaaggcaagaggtagactgg
ggtttcaaaatccttccccgagaagcagacgtgacctgggttgcttccca
cttaacaaaaacccagggtgagcagatggttccaaggggaatctgggaga
gtttgcctcctgagtttcatgatagacttcgacttgcactatacattgat
tgagtactatggggagcgcattggt
gaattcatctcttacaaacttccttccttttttggttgctagaatccact
cttcctggcttctgattcctgtgcagccaagcttgttctagcctcagtgg
ccccttctttctctctgcctagaagggcctcctctcatctttacaagcct
ggctcctcattaccacaattgctactgtgaagacaagcagggcctgtctc
tctgcattgggacctcaatgcctgccacagagtgggagtatgtacctttc
ctgccattgtgctggctgcatgactgactgaatgaataaatgaatgagta
gcaggtgctttcttaagtctttccttgtcacaacagaaagcacgggtgta
ctggttaatcacggttgtaggcttgacgagattgggaaccaagtaagtgc
taggctgctggacacacttgtgagcggttttcttgatcaagctgtcaccc
taaacccagtggcaacttttctttgtggcagccaggataagaagaagtca
gagggagaagctttgcttttttgcctcaccaaagtcagttcttgctggca
ggtccatctaccctgttgttgcttccaccactacaactgtcctccactga
caccagaatccagctttttcaggctcgcaacatggatggaagaccagcag
cactcaagacctctgccaggtcttcagtggctatggaggcttgtagcctc
atggactgaagagctaccaggctctcagcctcttcgctgtgaaccaatgt
agaaggtttcttcgggtcatttttagatatacttaagttttctttgactc
aaccatgactcaccatgccccattctgtcctctccccacctccatccgag
ctcccacttctgtcccggtattcctcttacactctaagatcgtctatgtt
cattagctccataccttctccttaaagcctcttatttgtctttctctcac
aggtcattcagtgcctgactatggacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_128647469_128648558
seq2: B6Ng01-021B02.b_45_1119 (reverse)

seq1  ACCAATGCGCTCACCATAGGTACATCAATCTAAATGGTATAGTGCAAGTC  50
      |||||||||||| ||||| |||| ||||||  ||| ||||||||||||||
seq2  ACCAATGCGCTCCCCATA-GTAC-TCAATC--AAT-GTATAGTGCAAGTC  45

seq1  GTAGTCTTATTCACTGAAACTCAGGAGGCCAACATCTTCCCAGATTCCCC  100
      | |||||   ||| ||||||||||||||| ||| || |||||||||||||
seq2  GAAGTCT--ATCA-TGAAACTCAGGAGGCAAAC-TC-TCCCAGATTCCCC  90

seq1  TTGGGAAACCATCTGCTCACCCCTGGGTTTCTGCTAAGTGGG-AGCAACC  149
      ||||  ||||||||||||| |||||||||| || |||||||| |||||||
seq2  TTGG--AACCATCTGCTCA-CCCTGGGTTTTTGTTAAGTGGGAAGCAACC  137

seq1  CAGGTCACGTCTGCTTCTCGGGGAAGGATTTTGAAACCCCAGTCTACCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCACGTCTGCTTCTCGGGGAAGGATTTTGAAACCCCAGTCTACCTC  187

seq1  TTGCCTCTCTGCAGGATGAAAATGGAAAACGATGTAGATAAATAAATATT  249
      |||||| | |||||||||||||||  ||||||||||||||||||||||||
seq2  TTGCCTTTTTGCAGGATGAAAATG--AAACGATGTAGATAAATAAATATT  235

seq1  TTAGAAATCCTACATTGCAAATTATTCATACTCCAAGCCTTTGGTCAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATCCTACATTGCAAATTATTCATACTCCAAGCCTTTGGTCAAGG  285

seq1  AGGATTTAAATGCTGGTGCCTCTGTTTCTCGCAGCTCTGTGTATTATTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTAAATGCTGGTGCCTCTGTTTCTCGCAGCTCTGTGTATTATTCA  335

seq1  GGCCGTGGAAATTGAACCCCAGGCTAGAGGCGTGGAAAGGAAAACAGCTA  399
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCCGTGGAAATTGAACCCCAGGCTAGAGGCGTGGAAA-GAAAACAGCTA  384

seq1  TTTTCTCTCTCGCTATGGAAACTCCGCACCATGGGGTGCTGAGAAGAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCTCGCTATGGAAACTCCGCACCATGGGGTGCTGAGAAGAAAT  434

seq1  GAGCAGCTTTAATAACTTCAGGGGACAGCTGCTTCTACTGAGCCAGTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTTTAATAACTTCAGGGGACAGCTGCTTCTACTGAGCCAGTATA  484

seq1  ATGGAGTTATGGTGCAGCATAAATCATGGGCGCCCATGGGAGGGTGTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTATGGTGCAGCATAAATCATGGGCGCCCATGGGAGGGTGTCTG  534

seq1  TTGAGGGCTCAGGAAAGTCTGTGATTCTCTTAGAACAAGTCAGCATGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCTCAGGAAAGTCTGTGATTCTCTTAGAACAAGTCAGCATGGCT  584

seq1  TGATTCCCCACACAGAATCAAGATTTTCCCCACTAGCTTTGATGGTCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCCACACAGAATCAAGATTTTCCCCACTAGCTTTGATGGTCTCT  634

seq1  GGGCAGCCGTCCTGTGTCAGGGAGTACCTGTGAACAGACTCCGGGTCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCGTCCTGTGTCAGGGAGTACCTGTGAACAGACTCCGGGTCTGC  684

seq1  CTGTGGAGCATCCATTTTGAACAACCACTGGCAGAGAGAACACTTGTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGCATCCATTTTGAACAACCACTGGCAGAGAGAACACTTGTCAC  734

seq1  TGTTTTCTAAGACCAGGCCCAGGCACACGTGTAAATGCATGACCCAGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTAAGACCAGGCCCAGGCACACGTGTAAATGCATGACCCAGGAA  784

seq1  GAACATATCCTTAGGACCAAGTCCTTGTCTTCTCTGTGCCTCTTCCCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATCCTTAGGACCAAGTCCTTGTCTTCTCTGTGCCTCTTCCCCAA  834

seq1  ACCTTTTAGAAATCAACCTAATGTATCTATCTGTCATCAGGTACCAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTAGAAATCAACCTAATGTATCTATCTGTCATCAGGTACCAAAAA  884

seq1  ACTCAACATGGTCTGGGAAGATGGCTCAGGAAAATGCTTGCAGCATGCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACATGGTCTGGGAAGATGGCTCAGGAAAATGCTTGCAGCATGCTC  934

seq1  ATGAAGATCTGGGTTTGATTCCCAGGATTCATATAAAAAGCCAGGAATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATCTGGGTTTGATTCCCAGGATTCATATAAAAAGCCAGGAATGG  984

seq1  TAGCACACACCTGAGTCACAGCACTGGGGAGATAGAAATGGAAGGAGCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACACCTGAGTCACAGCACTGGGGAGATAGAAATGGAAGGAGCCC  1034

seq1  TGAGGCTTGCTGGCCGGCTCTCTAGCCTAACTGTTGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTGCTGGCCGGCTCTCTAGCCTAACTGTTGAATTC  1075

seq1: chr1_128486034_128487028
seq2: B6Ng01-021B02.g_67_1045

seq1  GAATTCATCTCTTACAAACTTCCTTCCTTTTTTGGTTGCTAGAATCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTTACAAACTTCCTTCCTTTTTTGGTTGCTAGAATCCACT  50

seq1  CTTCCTGGCTTCTGATTCCTGTGCAGCCAAGCTTGTTCTAGCCTCAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCTTCTGATTCCTGTGCAGCCAAGCTTGTTCTAGCCTCAGTGG  100

seq1  CCCCTTCTTTCTCTCTGCCTAGAAGGGCCTCCTCTCATCTTTACAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTTTCTCTCTGCCTAGAAGGGCCTCCTCTCATCTTTACAAGCCT  150

seq1  GGCTCCTCATTACCACAATTGCTACTGTGAAGACAAGCAGGGCCTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCATTACCACAATTGCTACTGTGAAGACAAGCAGGGCCTGTCTC  200

seq1  TCTGCATTGGGACCTCAATGCCTGCCACAGAGTGGGAGTATGTACCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTGGGACCTCAATGCCTGCCACAGAGTGGGAGTATGTACCTTTC  250

seq1  CTGCCATTGTGCTGGCTGCATGACTGACTGAATGAATAAATGAATGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTGTGCTGGCTGCATGACTGACTGAATGAATAAATGAATGAGTA  300

seq1  GCAGGTGCTTTCTTAAGTCTTTCCTTGTCACAACAGAAAGCACGGGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGCTTTCTTAAGTCTTTCCTTGTCACAACAGAAAGCACGGGTGTA  350

seq1  CTGGTTAATCACGGTTGTAGGCTTGACGAGATTGGGAACCAAGTAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAATCACGGTTGTAGGCTTGACGAGATTGGGAACCAAGTAAGTGC  400

seq1  TAGGCTGCTGGACACACTTGTGAGCGGTTTTCTTGATCAAGCTGTCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGCTGGACACACTTGTGAGCGGTTTTCTTGATCAAGCTGTCACCC  450

seq1  TAAACCCAGTGGCAACTTTTCTTTGTGGCAGCCAGGATAAGAAGAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAGTGGCAACTTTTCTTTGTGGCAGCCAGGATAAGAAGAAGTCA  500

seq1  GAGGGAGAAGCTTTGCTTTTTTGCCTCACCAAAGTCAGTTCTTGCTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAAGCTTTGCTTTTTTGCCTCACCAAAGTCAGTTCTTGCTGGCA  550

seq1  GGTCCATCTACCCTGTTGTTGCTTCCACCACTACAACTGTCCTCCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATCTACCCTGTTGTTGCTTCCACCACTACAACTGTCCTCCACTGA  600

seq1  CACCAGAATCCAGCTTTTTCAGGCTCGCAACATGGATGGAAGACCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAATCCAGCTTTTTCAGGCTCGCAACATGGATGGAAGACCAGCAG  650

seq1  CACTCAAGACCTCTGCCAGGTCTTCAGTGGCTATGGAGGCTTGTAGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGACCTCTGCCAGGTCTTCAGTGGCTATGGAGGCTTGTAGCCTC  700

seq1  ATGGACTGAAGAGCTACCAGGCTCTCAGCCTCTTCGCTGTGAAACCAATG  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGACTGAAGAGCTACCAGGCTCTCAGCCTCTTCGCTGTG-AACCAATG  749

seq1  TAGAAGGTTTCTTCGGGTCATTTTTAGATATACTTAAGTTTTCTTTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGTTTCTTCGGGTCATTTTTAGATATACTTAAGTTTTCTTTGACT  799

seq1  CAACCATGACTCAACCATGCCCCATTCTGTCCTCTCCCCACCTCCATCCG  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAACCATGACTC-ACCATGCCCCATTCTGTCCTCTCCCCACCTCCATCCG  848

seq1  AGCTCCCCACTTCTGTCCCCGGTATTTCCTCTTACACTCTAAGATCGTCT  900
      |||| ||||||||||| ||||||| |||||||||||||||||||||||||
seq2  AGCT-CCCACTTCTGT-CCCGGTA-TTCCTCTTACACTCTAAGATCGTCT  895

seq1  ATGTTCCATTAGCCTCCATACCTTTCTCCCTTAAAGCCTCTTATTTTGTC  950
      ||||| |||||| ||||||||| |||| ||||||||||||||| ||||||
seq2  ATGTT-CATTAG-CTCCATACC-TTCT-CCTTAAAGCCTCTTA-TTTGTC  940

seq1  TTTCCTCTCACAGGCCCATTTCTAGTGCCCTGACCTATGGACATT  995
      ||| ||||||||||  ||||   |||| ||||| |||||||||||
seq2  TTT-CTCTCACAGG-TCATT--CAGTG-CCTGA-CTATGGACATT  979