BAC Information

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BAC

Clone NameB6Ng01-021H23
Chromosome5 (Build37)1 (Build37)
Map Location 4,261,870 - 4,262,869157,483,008 - 157,483,194
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021H23.bB6Ng01-021H23.g
ACCDH853985DH853986
length1,001292
definitionDH853985|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H23, 5' end.DH853986|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,261,870 - 4,262,869)(157,483,008 - 157,483,194)
sequence
gaattctttaatcagaataattttagacacacaaaaagttgcagacaata
cagaatttccatacacccctcatctaccttatcttaaattgttagattca
cactcttgttttatatgaatgggttctccctagagtcttgcttgcaattg
agtttgtttttctaccattcctttgaccttttccaaaagtttactaccaa
gatgagatagccttcatacataaaggttcaaaagttgagcactgataatc
tctattaaaagtcactggggagccattgggaagaatgggaagatggtctt
cttaggtagttcttgggggcagaagttgctttgttttcccaggagctgtg
atagtaatgctgagatgacaatggacttcataaacggcattgtttttgaa
agctccttgaaggatctgtgtttcccagagttcctggatccattccacag
tcaaaagaagcaaaaccaatcagatctacaaaaaattggctgatgatgtg
actttaaagcttgtgcggagagaaatttcagccttgcttacatgtaagta
acagtaaagccagacacagtggcacacacttttaatctctgtaccaggga
ggcaaaggcaggcagatgtctcagttcgaggccagcctggtcctcagagc
aagtaccaggacagccagggctacacagaaaatcctatcctgaaaaacaa
accaagacaaaaataaagtacctattagatcagcgtagcgtatggaggaa
cagtggcaccctagaagaggacaggcttccagagaggactgtgagtgcat
ggtgctttggtagcgaggtgagattgataggaatgttagcctatgcttcc
attacatttgttggagttttggcatttctattttttgattgagtccttaa
agagctgcattctccttaaaaaaaaaatctaattttgttaattattttta
tttgtagatgcatgtgactgcagtaccatcagatgccagaagatggcatc
t
caggacagccagggctgcacagagagaccctgtctcgaaaaaaaaagaaa
gaaggagaggagaggagaggagaggagaggagaggagaggagaggagagg
acaggagaatgttaatattctggtacaggttttttttggtattgggaact
ttgaccaacttttataaagtataaagagaatcttaaaaacatatataatt
agttgataattctgatgtagtttaaactcacttacttctttatttatact
ggattttgattggctctaaagaacatacaaaatagactcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_4261870_4262869
seq2: B6Ng01-021H23.b_40_1040

seq1  GAATTCTTTAATCAGAATAATTTTAGACACACAAAAAGTTGCAGACAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATCAGAATAATTTTAGACACACAAAAAGTTGCAGACAATA  50

seq1  CAGAATTTCCATACACCCCTCATCTACCTTATCTTAAATTGTTAGATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTCCATACACCCCTCATCTACCTTATCTTAAATTGTTAGATTCA  100

seq1  CACTCTTGTTTTATATGAATGGGTTCTCCCTAGAGTCTTGCTTGCAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTTTTATATGAATGGGTTCTCCCTAGAGTCTTGCTTGCAATTG  150

seq1  AGTTTGTTTTTCTACCATTCCTTTGACCTTTTCCAAAAGTTTACTACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTTTCTACCATTCCTTTGACCTTTTCCAAAAGTTTACTACCAA  200

seq1  GATGAGATAGCCTTCATACATAAAGGTTCAAAAGTTGAGCACTGATAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATAGCCTTCATACATAAAGGTTCAAAAGTTGAGCACTGATAATC  250

seq1  TCTATTAAAAGTCACTGGGGAGCCATTGGGAAGAATGGGAAGATGGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAAAGTCACTGGGGAGCCATTGGGAAGAATGGGAAGATGGTCTT  300

seq1  CTTAGGTAGTTCTTGGGGGCAGAAGTTGCTTTGTTTTCCCAGGAGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTAGTTCTTGGGGGCAGAAGTTGCTTTGTTTTCCCAGGAGCTGTG  350

seq1  ATAGTAATGCTGAGATGACAATGGACTTCATAAACGGCATTGTTTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATGCTGAGATGACAATGGACTTCATAAACGGCATTGTTTTTGAA  400

seq1  AGCTCCTTGAAGGATCTGTGTTTCCCAGAGTTCCTGGATCCATTCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTGAAGGATCTGTGTTTCCCAGAGTTCCTGGATCCATTCCACAG  450

seq1  TCAAAAGAAGCAAAACCAATCAGATCTACAAAAAATTGGCTGATGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAGCAAAACCAATCAGATCTACAAAAAATTGGCTGATGATGTG  500

seq1  ACTTTAAAGCTTGTGCGGAGAGAAATTTCAGCCTTGCTTACATGTAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGCTTGTGCGGAGAGAAATTTCAGCCTTGCTTACATGTAAGTA  550

seq1  ACAGTAAAGCCAGACACAGTGGCACACACTTTTAATCTCTGTACCAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAGCCAGACACAGTGGCACACACTTTTAATCTCTGTACCAGGGA  600

seq1  GGCAAAGGCAGGCAGATGTCTCAGTTCGAGGCCAGCCTGGTCCTCAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGCAGGCAGATGTCTCAGTTCGAGGCCAGCCTGGTCCTCAGAGC  650

seq1  AAGTACCAGGACAGCCAGGGCTACACAGAAAATCCTATCCTGAAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCAGGACAGCCAGGGCTACACAGAAAATCCTATCCTGAAAAACAA  700

seq1  ACCAAGACAAAAATAAAGTACCTATTAGATCAGCGTAGCGTATGGAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACAAAAATAAAGTACCTATTAGATCAGCGTAGCGTATGGAGGAA  750

seq1  CAGTGGCACCCTAGAAGAGGACAGGCTTCCAGAGAGGACTGTGAGTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCACCCTAGAAGAGGACAGGCTTCCAGAGAGGACTGTGAGTGCAT  800

seq1  GGTGC-TTGGTAGCGAGGTGAGATTGATAGGAATGTTAGCCTATGCTTCC  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTTGGTAGCGAGGTGAGATTGATAGGAATGTTAGCCTATGCTTCC  850

seq1  ATTACATTTGTTGGAGTTTTGGCATTTCTATTTTTTGATTGAGTCC-TAA  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTACATTTGTTGGAGTTTTGGCATTTCTATTTTTTGATTGAGTCCTTAA  900

seq1  AGAGCTGCATTCTCCTTAAAAAAAAAATCTAATTTTGTTAATTATTTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCATTCTCCTTAAAAAAAAAATCTAATTTTGTTAATTATTTTTA  950

seq1  TTTGTAGTATGCATGTGACTGCAGTACCATCAGATGCCAGAAGATGGCAT  998
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAG-ATGCATGTGACTGCAGTACCATCAGATGCCAGAAGATGGCAT  999

seq1  CT  1000
      ||
seq2  CT  1001

seq1: chr1_157483008_157483194
seq2: B6Ng01-021H23.g_180_366 (reverse)

seq1  ATTGAGTCTATTTTGTATGTTCTTTAGAGCCAATCAAAAACCAGTATAAA  50
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATGAGTCTATTTTGTATGTTCTTTAGAGCCAATCAAAATCCAGTATAAA  50

seq1  TAAAGAAGTAAGTGAGTTTTTACTACATCAGAATTATCAACTAATTATAT  100
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TAAAGAAGTAAGTGAGTTTAAACTACATCAGAATTATCAACTAATTATAT  100

seq1  ATGTTTTTAAGATTCTCTTTATACTTTATAAAAGTTGGTCAAAGTACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  ATGTTTTTAAGATTCTCTTTATACTTTATAAAAGTTGGTCAAAGTTCCCA  150

seq1  ATACCAAAAAAAACCTGTACCAGAATATTAACATTCT  187
      |||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAAAAAACCTGTACCAGAATATTAACATTCT  187