BAC Information

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BAC

Clone NameB6Ng01-021H24
Chromosome1 (Build37)
Map Location 38,355,471 - 38,480,460
singlet/doubletdoublet
Overlap geneAff3
Upstream geneInpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021H24.bB6Ng01-021H24.g
ACCDH853987DH853988
length1,151941
definitionDH853987|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H24, 5' end.DH853988|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,355,471 - 38,356,632)(38,479,527 - 38,480,460)
sequence
gaattccaacattctttgcttctgttccttttcccctctccctactctaa
ttttggtaggattgaagaataaacctgcttacagcatgctctctgccact
gagctacatatattaccccagctaccttgtcctccgtctccttgtctctc
tgtctgtccatttatccgtcagcagatttcactgtggcattttcgtgcct
tttccctttttatttttatgtcctgtgttttaccccctcctaccctccag
gtcttctttaaagcttcttctctccttctagtttcctggcccctacccat
attcactccaacacatagacacagacacatagacatacaggtacacacac
atgcacacggagatatacacagagatacacatacactcacccacacagag
acacacacatacatggacagacacagacacatacatatgcacacacatac
acacatgcacagacatatacatacatacacctcccacacacacacatgca
tgcacacacacccacatacacatgcacatacacagagacacaaattagaa
gacaggatctgcacaagatagagggatgtggtaatcgtctttctgggtct
ggggtgcttcagtataatactttccatacatattcactttcctgcagatt
tctcaattttatttttctttatggcttaagaaatataatataggactcga
gccccgggctaccttgccagcagagtcttgcccaacacccgcaagggccc
acacgggactccccacgggatcctaagacctctggtgagtgaaacacagc
gcctgccccaatccaatcgcgcggaacctgagactgcggtacatagggaa
gcaggctacccgggcttgatctggggcacaaacccctttcactcactcga
gccccgggctaccttgccagcggagtcgcctgacacccgcaagggccaca
caggattccacacgagatcctaggactctagtgagtggaacacactttct
gcaggagtctggttcgaccacagatattctgggtacttgcctgcaagaag
aagcttgctgcagaaatacttgcccactgaacttagagagtgctacccct
caggtctgctttttagaaggctacgagttcacctgaagaaaggctcttaa
c
gaattctaccgactcgggcactggttcaacatgatgaaaggtataactca
cccgattacaggtgcgtacagtaggccagcattcccatgtgtgcagaagg
gggatcagaaagcgtgcaagcagaacacaaagccagggaagttagcttgg
ggcccatgtctctgtcacccgactgtgctgtttgtctagagctcatctgg
tgagatttccagagccgcagatgtaatggtaacattgggtggttggtttg
ttgctttgttggtttgtttgtttttagaaccctccatccacgttgtcatc
tgacatggcagtgctgctgaaagtctgccctgttaccaatttcatctgtt
tctaaaagaaatgcaaaggatgcatgtttgtgagtagcctccaggtgagg
ggcaggcagaaggaacagtgtaaacactgtgattaaacaggcaggtttgc
agaataaaatgcagtgtgctcaggctaagtaatagtcctgtctgtctgac
agtttccgagcaaccggcacacacacaagatgataacaataggtgctaac
agatgcgttcactgtttttgtggagatcgttacaccggtcatgtgtacaa
tttatacggggacacttcaggtgtacatatagctttcagccagttaaaat
tttctaaattaaaaacatttaagatgtaaggccagtatggggttctatgt
gaattcccttcctaaccccaaatacatttttgaaaaaccatataaattaa
aagcaaagtggccattgagacaactttaaataatcatattgttggcctat
gatcattagactaaatgctgtggtaataatcttcttaaaagtaactggtt
ttcttcattatttatgtgaccagtgtttcatgcataccaacaagtgtgcc
taatatgctacagaggtcagaaagggtacatgatcagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38355471_38356632
seq2: B6Ng01-021H24.b_44_1194

seq1  GAATTCCAACATTCTTTGCTTCTGTTCCTTTTCCCCTCTCCCTACTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACATTCTTTGCTTCTGTTCCTTTTCCCCTCTCCCTACTCTAA  50

seq1  TTTTGGTAGGATTGAAGAATAAACCTGCTTACAGCATGCTCTCTGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAGGATTGAAGAATAAACCTGCTTACAGCATGCTCTCTGCCACT  100

seq1  GAGCTACATATATTACCCCAGCTACCTTGTCCTCCGTCTCCTTGTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACATATATTACCCCAGCTACCTTGTCCTCCGTCTCCTTGTCTCTC  150

seq1  TGTCTGTCCATTTATCCGTCAGCAGATTTCACTGTGGCATTTTCGTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCATTTATCCGTCAGCAGATTTCACTGTGGCATTTTCGTGCCT  200

seq1  TTTCCCTTTTTATTTTTATGTCCTGTGTTTTACCCCCTCCTACCCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTTTATTTTTATGTCCTGTGTTTTACCCCCTCCTACCCTCCAG  250

seq1  GTCTTCTTTAAAGCTTCTTCTCTCCTTCTAGTTTCCTGGCCCCTACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTAAAGCTTCTTCTCTCCTTCTAGTTTCCTGGCCCCTACCCAT  300

seq1  ATTCACTCCAACACATAGACACAGACACATAGACATACAGGTACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCCAACACATAGACACAGACACATAGACATACAGGTACACACAC  350

seq1  ATGCACACGGAGATATACACAGAGATACACATACACTCACCCACACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACGGAGATATACACAGAGATACACATACACTCACCCACACAGAG  400

seq1  ACACACACATACATGGACAGACACAGACACATACATATGCACACACATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACATGGACAGACACAGACACATACATATGCACACACATAC  450

seq1  ACACATGCACAGACATATACATACATACACCTCCCACACACACACATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCACAGACATATACATACATACACCTCCCACACACACACATGCA  500

seq1  TGCACACACACCCACATACACATGCACATACACAGAGACACAAATTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACCCACATACACATGCACATACACAGAGACACAAATTAGAA  550

seq1  GACAGGATCTGCACAAGATAGAGGGATGTGGTAATCGTCTTTCTGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATCTGCACAAGATAGAGGGATGTGGTAATCGTCTTTCTGGGTCT  600

seq1  GGGGTGCTTCAGTATAATACTTTCCATACATATTCACTTTCCTGCAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTTCAGTATAATACTTTCCATACATATTCACTTTCCTGCAGATT  650

seq1  TCTCAATTTTATTTTTCTTTATGGCTTAAGAAATATAATATAGGACTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTTATTTTTCTTTATGGCTTAAGAAATATAATATAGGACTCGA  700

seq1  GCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCC  750

seq1  ACACGGGACTCCCCACGGGATCCTAAGACCTCTGGTGAGTGAAACACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGACTCCCCACGGGATCCTAAGACCTCTGGTGAGTGAAACACAGC  800

seq1  GCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGCGGTACATAGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGCGGTACATAGGGAA  850

seq1  GCAGGCTACCCGGGCTTGATCTGGGGCACAAACCCCTTCCACTCCACTCG  900
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  GCAGGCTACCCGGGCTTGATCTGGGGCACAAACCCCTTTCACT-CACTCG  899

seq1  AGCCCCGGGCTACCTTGCCAGCGGAGTCGCCTGACACCCGCAAGGGCCCA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCCCGGGCTACCTTGCCAGCGGAGTCGCCTGACACCCGCAAGGG-CCA  948

seq1  CACAGGATTCCACACGAGATCCTAAGACCTCTAGTGAGTGGAACACAACT  1000
      |||||||||||||||||||||||| || |||||||||||||||||||  |
seq2  CACAGGATTCCACACGAGATCCTAGGA-CTCTAGTGAGTGGAACACACTT  997

seq1  TCTGCCAGGAGTCTGGTTCGAACACCAGATA-TCTGGGTACCTGCCCTGC  1049
      |||| |||||||||||||||| || |||||| ||||||||| || |||||
seq2  TCTG-CAGGAGTCTGGTTCGACCA-CAGATATTCTGGGTACTTG-CCTGC  1044

seq1  AAGAAGAGAGCTTGCCTGCAGAGAATACTCTGCCCACTGAAACTAAGGAG  1099
      ||||||| |||||| ||||||| |||||| |||||||||||  ||  |||
seq2  AAGAAGA-AGCTTG-CTGCAGA-AATACT-TGCCCACTGAACTTA--GAG  1088

seq1  AGTGCTACCCTCCAGGTCTGC-TTATAG-AGGCTAACAGAGTCACCTGAA  1147
      ||||||||||  ||||||||| || ||| ||||||  ||  |||||||||
seq2  AGTGCTACCCCTCAGGTCTGCTTTTTAGAAGGCTACGAG-TTCACCTGAA  1137

seq1  GAACAAGCTCTTAAC  1162
      ||| | |||||||||
seq2  GAA-AGGCTCTTAAC  1151

seq1: chr1_38479527_38480460
seq2: B6Ng01-021H24.g_69_1009 (reverse)

seq1  TCCTCTGATCATGTGACCCTTTCCTGACCTCTGTGGCATATTAGGCACAC  50
      |||||||||||||| ||||||| ||||||||||| |||||||||||||||
seq2  TCCTCTGATCATGT-ACCCTTT-CTGACCTCTGTAGCATATTAGGCACAC  48

seq1  TTG-TGGTATGCATGGAAACACTGGTCACATAAAATAAATGAAGAAAA-C  98
      ||| |||||||||| |||||||||||||||||||   ||||||||||| |
seq2  TTGTTGGTATGCAT-GAAACACTGGTCACATAAA--TAATGAAGAAAACC  95

seq1  AGTAGCTTTTAAAGAGATTATTACCACAGCCTTTAGTCT-ATGATCATAG  147
      |||  |||||||  |||||||||||||||| |||||||| ||||||||||
seq2  AGTTACTTTTAAGAAGATTATTACCACAGCATTTAGTCTAATGATCATAG  145

seq1  GCCAACAATATGATTATTT-AAGTTGTCTCAATGGCCACTTTGCTTTTAA  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCAACAATATGATTATTTAAAGTTGTCTCAATGGCCACTTTGCTTTTAA  195

seq1  TTTATATGGTTTTTC-AAAATGTATTT-GGGTTAGGAAGGGAATTCACAT  244
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTTATATGGTTTTTCAAAAATGTATTTGGGGTTAGGAAGGGAATTCACAT  245

seq1  AGAA-CCCATACTGGCCTTACATCTTAAATGTTTT--ATTTAG-AAATTT  290
      |||| ||||||||||||||||||||||||||||||  |||||| ||||||
seq2  AGAACCCCATACTGGCCTTACATCTTAAATGTTTTTAATTTAGAAAATTT  295

seq1  TAACTGGCTGAAAGCTATATGTACACCTGAAGTGT-CCCGTATAAATTGT  339
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAACTGGCTGAAAGCTATATGTACACCTGAAGTGTCCCCGTATAAATTGT  345

seq1  ACACATGACCGGTGTAACGATCTCCAC-AAAACAGTGAACGCATCTGTTA  388
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACACATGACCGGTGTAACGATCTCCACAAAAACAGTGAACGCATCTGTTA  395

seq1  GCACCTATTGTTATCATCTTGTGTGTGTGCCGGTTGCTCGGAAACTGTCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTATTGTTATCATCTTGTGTGTGTGCCGGTTGCTCGGAAACTGTCA  445

seq1  GACAGACAGGACTATTACTTAGCCTGAGCACACTGCATTTTATTCTGCAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGGACTATTACTTAGCCTGAGCACACTGCATTTTATTCTGCAA  495

seq1  ACCTGCCTGTTTAATCACAGTGTTTACACTGTTCCTTCTGCCTGCCCCTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTGTTTAATCACAGTGTTTACACTGTTCCTTCTGCCTGCCCCTC  545

seq1  ACCTGGAGGCTACTCACAAACATGCATCCTTTGCATTTCTTTTAGAAACA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGGCTACTCACAAACATGCATCCTTTGCATTTCTTTTAGAAACA  595

seq1  GATGAAATTGGTAACAGGGCAGACTTTCAGCAGCACTGCCATGTCAGATG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATTGGTAACAGGGCAGACTTTCAGCAGCACTGCCATGTCAGATG  645

seq1  ACAACGTGGATGGAGGGTTCTAAAAACAAACAAACCAACAAAGCAACAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGGATGGAGGGTTCTAAAAACAAACAAACCAACAAAGCAACAAA  695

seq1  CCAACCACCCAATGTTACCATTACATCTGCGGCTCTGGAAATCTCACCAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACCCAATGTTACCATTACATCTGCGGCTCTGGAAATCTCACCAG  745

seq1  ATGAGCTCTAGACAAACAGCACAGTCGGGTGACAGAGACATGGGCCCCAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCTAGACAAACAGCACAGTCGGGTGACAGAGACATGGGCCCCAA  795

seq1  GCTAACTTCCCTGGCTTTGTGTTCTGCTTGCACGCTTTCTGATCCCCCTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTCCCTGGCTTTGTGTTCTGCTTGCACGCTTTCTGATCCCCCTT  845

seq1  CTGCACACATGGGAATGCTGGCCTACTGTACGCACCTGTAATCGGGTGAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACATGGGAATGCTGGCCTACTGTACGCACCTGTAATCGGGTGAG  895

seq1  TTATACCTTTCATCATGTTGAACCAGTGCCCGAGTCGGTAGAATTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTTTCATCATGTTGAACCAGTGCCCGAGTCGGTAGAATTC  941