BAC Information

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BAC

Clone NameB6Ng01-021M18
Chromosome1 (Build37)17 (Build37)
Map Location 141,227,778 - 141,228,22593,001,178 - 93,001,985
singlet/doubletsingletsinglet
Overlap geneCrb1
Upstream geneLOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b
Downstream geneZbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M18.bB6Ng01-021M18.g
ACCDH854203DH854204
length835810
definitionDH854203|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M18, 5' end.DH854204|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(141,227,778 - 141,228,225)(93,001,178 - 93,001,985)
sequence
gaattctgccctaagtccatctattactgttttttttccatctatatttc
ctttattttaggagagcatgggatttttttcccattttttattaggtatt
tagctcatttacatttccaatgctataccaaaagtcccccatacccaccc
acccccactcccctacccacccactccccctttttggccctggcatttcc
ctgtactggggcatataaagtttgcgtgtccaatgggcctctctttccag
tgatggccgactaggccatcttttgatacatatgcagctagagtcaagag
ctccggggtactggttagttcataatgttgttccacctatagggttgcag
atccctttagctccttggctactttctctagctcctccactgggagccct
atgatccatccattagctgactgtgagcatccacttctgtgtttgctagg
ccccggcatagtctcacaagagacagctacctctgggtcctttcgataaa
atcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatgggg
tggatccctggatatggcagtctctacatggtccatcctttcatctcagc
tccaaactttgtctctgtaactccttccatgggtgttttgttcccacttc
taaggaggggcatagtgtccacacttcagtcttcattcttcttgagtttc
atgtgtttaggaaattgtatcttatatcttgagtatcctaggtttggggc
ttaatatccacttatcagtgagtacatattgtgtgagtcccttgtgaatg
tgttacctcactcaggatgatgccctccaggtcca
gaattcataaacccagaaaaatataatgatggccaaatattgcttcctat
cccaagatagattgtcgacaatgaaaaaagtgtttttctataaaaaatta
tccattattagagatgaatgaaacattgatgatatctactaaaggtctaa
atataaaggacagtgtgtgagaatctcattttaagttatgttatatttgc
ttatcttgacatactacatgtaaagggtgtgaagacactttgaaacacat
ctggattagcatcctgcaatctagaatacagtggaaaatgaagtcttata
gaacagcaaaacaaactcaagttcctgcaaataaaatagctttgtgatgt
gtaagattaaaagtttccattacactagtgattgtaattgattaggttat
acaccaaaatatatgtaagtaataaacttagggtttacttacttccatgg
atgccagcaagaataacaaaacctttgcagactgtattctataccaacca
gaatcaagatttctattgtaagactctgatgcacatgaattgagaaaaaa
atagtaaatatatgaatataagcttactctgcttcagagacatcagcatc
tttcaactgagaagggtttatgtagcacagttactgaaatgtcagttagg
acaggcaatagtggtgcatgcttttaatgtcagaacttgaaggtggatct
ctctgattttgagcccagcctgatgtacagagtgagttccagaaacaaga
ctacatagagaaactctgtcctgaaaaactaaaaagaaggaggaggagga
ggtagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141227778_141228225
seq2: B6Ng01-021M18.b_119_643 (reverse)

seq1  TGAGATGAAAGGATGGATCATGTAGAGACTGCCATATCCAGGGATCCACC  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACC  50

seq1  CCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTT  100

seq1  TATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCC  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATCGAAAGGACCCAGAGGTAGCTGTCTCTTGTGAGACTATGCCGGGGCC  150

seq1  TAGCAAACACAGAAGTGGATGCTCACAGTCAGCTA----------CA-AG  189
      |||||||||||||||||||||||||||||||||||          || ||
seq2  TAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAG  200

seq1  GGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCT  239
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  GGCTCCCAGTGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCT  250

seq1  GCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCTGGAGCT  289
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCT  300

seq1  CTTAACTCTAGCTGCATATGTATCAAAAGATGGCCTGGTCGGCCATCACT  339
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACT  350

seq1  GGAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGG  389
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGG  400

seq1  GAACGCCAGGGCCAAAAAGGGGGAG-------------------------  414
       || |||||||||||||||||||||                         
seq2  AAATGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGG  450

seq1  -----------------------------------------TGAGCTAAA  423
                                               |||||||||
seq2  GTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAA  500

seq1  TACCTAATAAAAAATGGAAAAAAAA  448
      ||||||||||||||||| |||||||
seq2  TACCTAATAAAAAATGGGAAAAAAA  525

seq1: chr17_93001178_93001985
seq2: B6Ng01-021M18.g_68_875

seq1  GAATTCATAAACCCAGAAAAATATAATGATGGCCAAATATTGCTTCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAACCCAGAAAAATATAATGATGGCCAAATATTGCTTCCTAT  50

seq1  CCCAAGATAGATTGTCGACAATGAAAAAAGTGTTTTTCTATAAAAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATAGATTGTCGACAATGAAAAAAGTGTTTTTCTATAAAAAATTA  100

seq1  TCCATTATTAGAGATGAATGAAACATTGATGATATCTACTAAAGGTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATTAGAGATGAATGAAACATTGATGATATCTACTAAAGGTCTAA  150

seq1  ATATAAAGGACAGTGTGTGAGAATCTCATTTTAAGTTATGTTATATTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGGACAGTGTGTGAGAATCTCATTTTAAGTTATGTTATATTTGC  200

seq1  TTATCTTGACATACTACATGTAAAGGGTGTGAAGACACTTTGAAACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGACATACTACATGTAAAGGGTGTGAAGACACTTTGAAACACAT  250

seq1  CTGGATTAGCATCCTGCAATCTAGAATACAGTGGAAAATGAAGTCTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTAGCATCCTGCAATCTAGAATACAGTGGAAAATGAAGTCTTATA  300

seq1  GAACAGCAAAACAAACTCAAGTTCCTGCAAATAAAATAGCTTTGTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAAAACAAACTCAAGTTCCTGCAAATAAAATAGCTTTGTGATGT  350

seq1  GTAAGATTAAAAGTTTCCATTACACTAGTGATTGTAATTGATTAGGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTAAAAGTTTCCATTACACTAGTGATTGTAATTGATTAGGTTAT  400

seq1  ACACCAAAATATATGTAAGTAATAAACTTAGGGTTTACTTACTTCCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAATATATGTAAGTAATAAACTTAGGGTTTACTTACTTCCATGG  450

seq1  ATGCCAGCAAGAATAACAAAACCTTTGCAGACTGTATTCTATACCAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCAAGAATAACAAAACCTTTGCAGACTGTATTCTATACCAACCA  500

seq1  GAATCAAGATTTCTATTGTAAGACTCTGATGCACATGAATTGAGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGATTTCTATTGTAAGACTCTGATGCACATGAATTGAGAAAAAA  550

seq1  ATAGTAAATATATGAATATAAGCTTACTCTGCTTCAGAGACATCAGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAATATATGAATATAAGCTTACTCTGCTTCAGAGACATCAGCATC  600

seq1  TTTCAACTGAGAAGGGTTTATGTAGCACAGTTACTGAAATGTCAGTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTGAGAAGGGTTTATGTAGCACAGTTACTGAAATGTCAGTTAGG  650

seq1  ACAGGCAATAGTGGTGCATGCTTTTAATGTCAGAACTTGAAGGTGGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAATAGTGGTGCATGCTTTTAATGTCAGAACTTGAAGGTGGATCT  700

seq1  CTCTGATTTTGAGCCCAGCCTGATGTACAGAGTGAGTTCCAGAAACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTTGAGCCCAGCCTGATGTACAGAGTGAGTTCCAGAAACAAGA  750

seq1  CTACATAGAGAAACTCTGTCCTGAAAAACTAAAAAGAAGGAGGAGGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGAGAAACTCTGTCCTGAAAAACTAAAAAGAAGGAGGAGGAGGA  800

seq1  GGTAGAGA  808
      ||||||||
seq2  GGTAGAGA  808