BAC Information

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BAC

Clone NameB6Ng01-021O21
Chromosome1 (Build37)
Map Location 116,284,831 - 116,435,640
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021O21.bB6Ng01-021O21.g
ACCDH854304DH854305
length9951,096
definitionDH854304|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O21, 5' end.DH854305|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,284,831 - 116,285,736)(116,434,532 - 116,435,640)
sequence
gaattcacttctctatctttgtatagcaataattttatgtactgagccat
ctgatacccacaaacataatctgaaattaatgtcttgcaataatactaat
ggctatattcaggtgaaccctttgaggtgtttgtgactctaggagttcat
ttgtaaacaggataatactgaggtcaagtgggacaaagtcaatgtttatg
taaactgctagtgcttttcctggtacatataaaatcctattcttactcta
tctcacaccatttactgcagtggtcttagcgattatgccgaatcaaggat
gaatgatcagaacatcttccactcagtaaagcatttgtactaggagtctc
tacaaagtatgtgctgaaggaaagcccaaatagttacttatccccaatct
aagagaaagggaacttcttaaatattttactattctgcctggtatttgct
tgaaagagtgttatatgaccagctgtataagtatagaaaagcaggtatat
aaatcaagtaatctttgtatgataaacaataaagacagttatttaaaaac
tattgtttaatatatgtgtgtgaacatatatactaccatagtaagcctat
taagtatacactatacatatgcatacaaatacactatacatattaagtaa
aagtaaaacttactaatgagaccatatgccttttcattttctcataaaga
agtaaatcttggttataaggtatctccaagtgtcttcaaagtagatcact
attttaattttttaattgttaatgatgagaagaacactgccatctacatg
catattttaaaatattgaacatatatttaggaataactggaaattatttc
cagatactaagtcaaattaattccacaactttatgaaatttaacgtagga
acccagacagtaaacatttaaaataattgttaacacagccacagatagaa
taatttgacattccatgatgagcaggcaaatatcaaactcttgtt
gaattcatcctgtaacaagagtaagaatgcaatttattgagtatgctgga
atagggcaaagggatgggtagtacttgcatacccgtgaaggaaagggaaa
tgagctgggacagttagagtaagcttgtctgtagagtttcttgtatgtaa
ttcaaagcccaatggtcattttataggtctggtggttacactgaccttct
gtgtacatcatttccaattgtgtaactctgccattcagataaggaaaaaa
taatctgggaatatggaaataaattcatttatctcagtcatggtgtgcag
ggctacagctctgtgttgccagattatagcattcattggtactatagaat
tgtagaccgtgcttaagatgatttccatgagtttccattcacataatccc
attcagtaaagcattcttcttcctagttccctccattgctcttgctggtg
atgtccttctgtccagaggctttgcctggaaagaatgctatatctttctt
ctttctagaataatcactgtgaaatttgcaactttgtttatcctttattt
tattaattcacaacattattcaattttgcactcttaaatgtatgcatttg
tgtcctcatataggaatgtatgtaggaccacatgtgcccatgaatgccag
aacagggtgttggagctcctgagcctggccttgagatgtgtaatatacat
gctaggaatagaacctagcatttctgcaagggcagtacatacttttactt
atagagccacctatccagatcaattattctgttaaataaaaacaaatcat
ttaaaacaaaatgtattcactagagagagtaaaaaaggacagccccatgc
agaatgtttgtattttattacatctaagtgaacaatccattttaaatgat
taattctactagaatgcaattatgtctactactactaatgaaataaatac
tttcagcttcaattcatctctcttccctttctcacttgcttcattagctg
tatctgggatgctttcttcaaagctctctgcatgcagctgccctgttaat
ggactgttcttattgatactagggagtcatcttaaaaaagcagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116284831_116285736
seq2: B6Ng01-021O21.b_48_952

seq1  GAATTCACTTCTCTATCTTTGTATAGCAATAATTTTATGTACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCTATCTTTGTATAGCAATAATTTTATGTACTGAGCCAT  50

seq1  CTGATACCCACAAACATAATCTGAAATTAATGTCTTGCAATAATACTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCCACAAACATAATCTGAAATTAATGTCTTGCAATAATACTAAT  100

seq1  GGCTATATTCAGGTGAACCCTTTGAGGTGTTTGTGACTCTAGGAGTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATTCAGGTGAACCCTTTGAGGTGTTTGTGACTCTAGGAGTTCAT  150

seq1  TTGTAAACAGGATAATACTGAGGTCAAGTGGGACAAAGTCAATGTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACAGGATAATACTGAGGTCAAGTGGGACAAAGTCAATGTTTATG  200

seq1  TAAACTGCTAGTGCTTTTCCTGGTACATATAAAATCCTATTCTTACTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCTAGTGCTTTTCCTGGTACATATAAAATCCTATTCTTACTCTA  250

seq1  TCTCACACCATTTACTGCAGTGGTCTTAGCGATTATGCCGAATCAAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACCATTTACTGCAGTGGTCTTAGCGATTATGCCGAATCAAGGAT  300

seq1  GAATGATCAGAACATCTTCCACTCAGTAAAGCATTTGTACTAGGAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCAGAACATCTTCCACTCAGTAAAGCATTTGTACTAGGAGTCTC  350

seq1  TACAAAGTATGTGCTGAAGGAAAGCCCAAATAGTTACTTATCCCCAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTATGTGCTGAAGGAAAGCCCAAATAGTTACTTATCCCCAATCT  400

seq1  AAGAGAAAGGGAACTTCTTAAATATTTTACTATTCTGCCTGGTATTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGGGAACTTCTTAAATATTTTACTATTCTGCCTGGTATTTGCT  450

seq1  TGAAAGAGTGTTATATGACCAGCTGTATAAGTATAGAAAAGCAGGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGTGTTATATGACCAGCTGTATAAGTATAGAAAAGCAGGTATAT  500

seq1  AAATCAAGTAATCTTTGTATGATAAACAATAAAGACAGTTATTTAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGTAATCTTTGTATGATAAACAATAAAGACAGTTATTTAAAAAC  550

seq1  TATTGTTTAATATATGTGTGTGAACATATATACTACCATAGTAAGCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTAATATATGTGTGTGAACATATATACTACCATAGTAAGCCTAT  600

seq1  TAAGTATACACTATACATATGCATACAAATACACTATACATATTAAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATACACTATACATATGCATACAAATACACTATACATATTAAGTAA  650

seq1  AAGTAAAACTTACTAATGAGACCATATGCCTTTTCATTTTCTCATAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAACTTACTAATGAGACCATATGCCTTTTCATTTTCTCATAAAGA  700

seq1  AGTAAATCTTGGTTATAAGGTATCTCCAAGTGTCTTCAAAGTAGATCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATCTTGGTTATAAGGTATCTCCAAGTGTCTTCAAAGTAGATCACT  750

seq1  ATTTTAATTTTTTAATTGTTAATGATGAGAAGAACACTGCCATCTACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTTTTAATTGTTAATGATGAGAAGAACACTGCCATCTACATG  800

seq1  CATATTTTAAAATATTGAACATATATTTAGGAATAACTGGAAATTATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAAAATATTGAACATATATTTAGGAATAACTGGAAATTATTTC  850

seq1  CAGATACTAAGTCAAAATTAATTCCACAACTTTATGAAATTTAAGGTAGG  900
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  CAGATACTAAGTC-AAATTAATTCCACAACTTTATGAAATTTAACGTAGG  899

seq1  AACCCA  906
      ||||||
seq2  AACCCA  905

seq1: chr1_116434532_116435640
seq2: B6Ng01-021O21.g_67_1162 (reverse)

seq1  ATTCTGCTTTCTTAAGTGTGACTTCCTAGTAATCAATAAGAACAGTCCAT  50
      |||||||||| |||||  ||||| |||||| |||||||||||||||||||
seq2  ATTCTGCTTTTTTAAG-ATGACTCCCTAGT-ATCAATAAGAACAGTCCAT  48

seq1  TAACAGAGCAGCTGGCATGGCAGAGAAGCTGTTGAAGAAAAGCATTCCAG  100
      |||||| |||||| |||| |||||| |||| |||||| ||||||| ||||
seq2  TAACAGGGCAGCT-GCAT-GCAGAG-AGCT-TTGAAG-AAAGCATCCCAG  93

seq1  ATACAGCTAATGAAAGCAAGTGAGAAAAGGGAAGAGAGATGAATTGAAGC  150
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ATACAGCTAATG-AAGCAAGTGAG-AAAGGGAAGAGAGATGAATTGAAGC  141

seq1  TGAAAGTAATTTATTTCATTAGTTAGTAGTAGACATAAATTGCATTCTAG  200
      ||||||| |||||||||||||| ||||||||||||| |||||||||||||
seq2  TGAAAGT-ATTTATTTCATTAG-TAGTAGTAGACAT-AATTGCATTCTAG  188

seq1  TAGAATTAATCATTTAAAATGGATTGTTCACTTAGATGTTATAAAAATAC  250
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  TAGAATTAATCATTTAAAATGGATTGTTCACTTAGATGTAAT-AAAATAC  237

seq1  AAACATTCTGCATGGGGCTGTCCTTTTTTACTCTCTCTAGTGAATACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTGCATGGGGCTGTCCTTTTTTACTCTCTCTAGTGAATACATT  287

seq1  TTGTTTTAAATGATTTGTTTTTATTTAACAGAATAATTGATCTGGATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAATGATTTGTTTTTATTTAACAGAATAATTGATCTGGATAGG  337

seq1  TGGCTCTATAAGTAAAAGTATGTACTGCCCTTGCAGAAATGCTAGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTATAAGTAAAAGTATGTACTGCCCTTGCAGAAATGCTAGGTTCT  387

seq1  ATTCCTAGCATGTATATTACACATCTCAAGGCCAGGCTCAGGAGCTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGCATGTATATTACACATCTCAAGGCCAGGCTCAGGAGCTCCAA  437

seq1  CACCCTGTTCTGGCATTCATGGGCACATGTGGTCCTACATACATTCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTTCTGGCATTCATGGGCACATGTGGTCCTACATACATTCCTAT  487

seq1  ATGAGGACACAAATGCATACATTTAAGAGTGCAAAATTGAATAATGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACACAAATGCATACATTTAAGAGTGCAAAATTGAATAATGTTGT  537

seq1  GAATTAATAAAATAAAGGATAAACAAAGTTGCAAATTTCACAGTGATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATAAAATAAAGGATAAACAAAGTTGCAAATTTCACAGTGATTAT  587

seq1  TCTAGAAAGAAGAAAGATATAGCATTCTTTCCAGGCAAAGCCTCTGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGAAGAAAGATATAGCATTCTTTCCAGGCAAAGCCTCTGGACA  637

seq1  GAAGGACATCACCAGCAAGAGCAATGGAGGGAACTAGGAAGAAGAATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACATCACCAGCAAGAGCAATGGAGGGAACTAGGAAGAAGAATGCT  687

seq1  TTACTGAATGGGATTATGTGAATGGAAACTCATGGAAATCATCTTAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAATGGGATTATGTGAATGGAAACTCATGGAAATCATCTTAAGCA  737

seq1  CGGTCTACAATTCTATAGTACCAATGAATGCTATAATCTGGCAACACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTACAATTCTATAGTACCAATGAATGCTATAATCTGGCAACACAGA  787

seq1  GCTGTAGCCCTGCACACCATGACTGAGATAAATGAATTTATTTCCATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCCCTGCACACCATGACTGAGATAAATGAATTTATTTCCATATT  837

seq1  CCCAGATTATTTTTTCCTTATCTGAATGGCAGAGTTACACAATTGGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTATTTTTTCCTTATCTGAATGGCAGAGTTACACAATTGGAAAT  887

seq1  GATGTACACAGAAGGTCAGTGTAACCACCAGACCTATAAAATGACCATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACACAGAAGGTCAGTGTAACCACCAGACCTATAAAATGACCATTG  937

seq1  GGCTTTGAATTACATACAAGAAACTCTACAGACAAGCTTACTCTAACTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAATTACATACAAGAAACTCTACAGACAAGCTTACTCTAACTGT  987

seq1  CCCAGCTCATTTCCCTTTCCTTCACGGGTATGCAAGTACTACCCATCCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCATTTCCCTTTCCTTCACGGGTATGCAAGTACTACCCATCCCT  1037

seq1  TTGCCCTATTCCAGCATACTCAATAAATTGCATTCTTACTCTTGTTACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTATTCCAGCATACTCAATAAATTGCATTCTTACTCTTGTTACAG  1087

seq1  GATGAATTC  1109
      |||||||||
seq2  GATGAATTC  1096