BAC Information

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BAC

Clone NameB6Ng01-022H11
Chromosome1 (Build37)
Map Location 117,413,405 - 117,414,409
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022H11.bB6Ng01-022H11.g
ACCDH854671DH854672
length9971,184
definitionDH854671|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H11, 5' end.DH854672|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgggagaatggggagtcactgactagtagaacaaactattat
ttgctcatctttgtctgtattttaaacacatttctaccaggtttatctga
agttattcttggagctagggaaatttctcaatgcataaaagtgcttactg
gccaagcatgataacacacacacacacaataaaaacttaagaaataaaaa
aatattttcagtgtctgatgacaccacaaagacaaacttttgtattcttc
ttctcatttttcttctgcttattgtatctgacttggggaaaatgagttaa
ataagtggtagattttggatttaacaacaaactataattagttgctgttc
caatatagggacatatatttatcagggaaagagaactgattatataaata
tataaaaggagatttttttacattgacatggatggcttctttctcactgg
aggggctaataactgggaggctgctcagtctatgacagtggatgctaaaa
cagtcccaaactagtgctaagggtttagagagtcctaaaagagcaactta
tatctacccccccccacacacacacaaataataacatgtgcaccataggt
ttatacacataggcacacatgcacacacacatgatgcattctttactaat
tctgttgggcagggggtaggtgttaagatgttttcctaaactgactagaa
atagaatttgaggctcaaagctgttctcacttcatggcagccacttttac
accacagtcaacgttttgacagattttgttaagcaagcaggaagcagggc
tgctaaggctctttcaacatgggcctaatcgcacattccgagcggcattg
taggtaggggtcaaaagacatggagttctgtattttctttattatagaca
agaagtagtcagtggtagagaaaatctgttcttagaagggagagaactga
ttgaataatagacatttcagtcatgctgatctttgccccagagagtt
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaactgtgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcagttgacagc
agatgctggtgaggatgtggagaaagaggaacactcccccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactatcagaggatcctacaatacctcttctgggc
atatatacagaagatgttccaaatagtaagaaagacacatgctccacgat
gttcatagcagccttatttataatagccagaagttggaaaaaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagtataccggagatataagatacaatttgcaaaacacatgaaactgaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggga
acaacacccatggaaggagttgcagagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatatccagggatccatcccataatca
gcctccaaatgatgacaccattgcatacactagcaagagtttgctgaaag
gaccctgatatagctgtctcttgtgagactatgccagggcctagcaaaca
cataagtggatcctcacagtcagctattggatggatcatagagcccccaa
tgaaggagctagagaaagtatccaagagctaaggatatctgcaaccctgt
aggtgcacaacattatgaactaaccagtaccccggaagctcttgacttta
gcttcattggtatcaaaagatgacctattcggccatccacgggaaaaaag
tcccttgggacatgcaacacttgtatgccagtacaggggaaagaccgtat
ctaaagggcatgggtgtggtatgacgaatagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_117413405_117414409
seq2: B6Ng01-022H11.b_43_1039 (reverse)

seq1  AACTCTCTGGGGCAAAAGTCAGCCATGAACTGAAATGGTCTATTATTCAT  50
      ||||||||||||||||  |||| |||| |||||||| |||||||||||| 
seq2  AACTCTCTGGGGCAAAGATCAG-CATG-ACTGAAAT-GTCTATTATTCAA  47

seq1  TCAGTTCTCTCACCTTCTAAGAACAGATTTTCCTCTTACACTGACTACTT  100
      ||||||||||| ||||||||||||||||||| ||||  ||||||||||||
seq2  TCAGTTCTCTC-CCTTCTAAGAACAGATTTT-CTCTACCACTGACTACTT  95

seq1  CTTTGTCTATTAATAAAGGAAATTACAGAACTCCATGTCTTTTTGACCCC  150
      | ||||||| ||||||| |||| |||||||||||||||| ||||||||||
seq2  C-TTGTCTA-TAATAAA-GAAAATACAGAACTCCATGTC-TTTTGACCCC  141

seq1  TACCTACAATGCCGCTCGGAATGTGCTGATTAGGCCATTGTTGAAAGAGC  200
      |||||||||||||||||||||||||| |||||||||  ||||||||||||
seq2  TACCTACAATGCCGCTCGGAATGTGC-GATTAGGCCCATGTTGAAAGAGC  190

seq1  CTTAGCAGCCCTGCTTCCTGCTTGCTTAACAAAATCTGTCAAAACGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGCCCTGCTTCCTGCTTGCTTAACAAAATCTGTCAAAACGTTGA  240

seq1  CTGTGGTGT-AAAGTGGCTGCCATGAAGTGAGAACAGCTTTGAGCCTC-A  298
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  CTGTGGTGTAAAAGTGGCTGCCATGAAGTGAGAACAGCTTTGAGCCTCAA  290

seq1  ATTCTATTTCTAGTCAGTTTAGGAAAACATCTTAACACCTACCCCCTGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTCTAGTCAGTTTAGGAAAACATCTTAACACCTACCCCCTGCC  340

seq1  CAACAGAATTAGTAAAGAATGCATCATGTGTGTGTGCATGTGTGCCTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAATTAGTAAAGAATGCATCATGTGTGTGTGCATGTGTGCCTATG  390

seq1  TGTATAAACCTATGGTGCACATGTTATTATTTGTGTGTGTGTGGGGGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAACCTATGGTGCACATGTTATTATTTGTGTGTGTGTGGGGGGGG  440

seq1  GTAGATATAAGTTGCTCTTTTAGGACTCTCTAAACCCTTAGCACTAGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATAAGTTGCTCTTTTAGGACTCTCTAAACCCTTAGCACTAGTTT  490

seq1  GGGACTGTTTTAGCATCCACTGTCATAGACTGAGCAGCCTCCCAGTTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTTTTAGCATCCACTGTCATAGACTGAGCAGCCTCCCAGTTATT  540

seq1  AGCCCCTCCAGTGAGAAAGAAGCCATCCATGTCAATGTAAAAAAATCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCCAGTGAGAAAGAAGCCATCCATGTCAATGTAAAAAAATCTCC  590

seq1  TTTTATATATTTATATAATCAGTTCTCTTTCCCTGATAAATATATGTCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATTTATATAATCAGTTCTCTTTCCCTGATAAATATATGTCCC  640

seq1  TATATTGGAACAGCAACTAATTATAGTTTGTTGTTAAATCCAAAATCTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGAACAGCAACTAATTATAGTTTGTTGTTAAATCCAAAATCTAC  690

seq1  CACTTATTTAACTCATTTTCCCCAAGTCAGATACAATAAGCAGAAGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTAACTCATTTTCCCCAAGTCAGATACAATAAGCAGAAGAAAA  740

seq1  ATGAGAAGAAGAATACAAAAGTTTGTCTTTGTGGTGTCATCAGACACTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGAAGAATACAAAAGTTTGTCTTTGTGGTGTCATCAGACACTGA  790

seq1  AAATATTTTTTTATTTCTTAAGTTTTTATTGTGTGTGTGTGTGTTATCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTTTATTTCTTAAGTTTTTATTGTGTGTGTGTGTGTTATCAT  840

seq1  GCTTGGCCAGTAAGCACTTTTATGCATTGAGAAATTTCCCTAGCTCCAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCAGTAAGCACTTTTATGCATTGAGAAATTTCCCTAGCTCCAAG  890

seq1  AATAACTTCAGATAAACCTGGTAGAAATGTGTTTAAAATACAGACAAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTCAGATAAACCTGGTAGAAATGTGTTTAAAATACAGACAAAGA  940

seq1  TGAGCAAATAATAGTTTGTTCTACTAGTCAGTGACTCCCCATTCTCCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAATAATAGTTTGTTCTACTAGTCAGTGACTCCCCATTCTCCCAA  990

seq1  TGAATTC  1005
      |||||||
seq2  TGAATTC  997