BAC Information

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BAC

Clone NameB6Ng01-022I13
ChromosomeY (Build37)1 (Build37)
Map Location 1,544,645 - 1,544,79645,878,814 - 45,879,813
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022I13.bB6Ng01-022I13.g
ACCDH854717DH854718
length953996
definitionDH854717|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I13, 5' end.DH854718|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,645 - 1,544,796)(45,878,814 - 45,879,813)
sequence
gaattcatacccactatgcctcaagatctccataccaagatccaggtcag
aaacttctatctcccagccttcagattaggatcactggggagccttccaa
ttctgaattgtagttcattccagatatagtcaagttgacagccaggaata
gccactacacatattatttttagatttggtcttttcatagtgtcccagat
gtcctggatgtttttgccaggatttttcagacttaacatttcttggattg
aagtgttagtttcttttattgtgccttcaatgcctgagattttctcttcc
acctcttgtattctcttggtaaggtttgcctctgaggtttctttcgcttt
ggtgttatttatttatattgattcaggtcttgttttatttatttgtaata
gtatttcacaggggtgaagagtttctatgccccctttgctccaaaataac
tgcagggtgtttgtatgcatgctctagcccattttatcttccaaaaaaaa
gtcagagacctggcatttttattaagaagctacaagtgctaatagctggg
taaatgttgatctattcttaccttactaggctgctactacccagccaaat
gtcccattacttgccatctggtcttgctctggttcactcaggcccatgtg
tgtcctcatgggctgcttttttcatcaccatctcatggtgaattcttcag
gtctctccacacctcctcctggtgatttttctctactttttttggctctt
actaaagtaccccctgactagaatcagaagtcccactgtatctcttcttc
ccctactaattggctgatcagctctttattaccaatcagaggtgatagaa
aacaattttcacataacattgagaccagagatgtttgaccatgccatcac
cagactataagcagatgtctgggtatagaaattagcctttgagtacaccg
tgc
gaattctgcttagtcccatccttgtactgtatttcagtttttgcctattt
tgtgggcagttttgtcatgtgtatcaacaacacacacaacaccccttgct
tttgtcttagaatattgttttcttgactctactaaggttttattctttaa
cctgctgcatccttccaggttgtcgctgtgtgaccttgccccagttcttt
gccagtatgagcatatggcctctgaaaacacgttcctgtaatctttataa
tccctagcaaggaaggcatggttctctcattagtgtctttggctagcttt
cccatgtagaaagtggggcactgggcatcagttgctttgtctatggcctg
agagtaacatcatgtgatttcaagcttttcaccagagtcattttatagtt
cagtgacccttaacctgttcagtcaaagaatttccatctttttattgaaa
taatttcctcttctcttacatccatacagctgctggcagaagaaagtttg
ccaacgaccccattttctttcatattgggaaaacacaggcaacagcaggg
tgcaaagttaacagaaacttcagagaatgaactggtacaactccccttaa
cagagaacatacctgcaattactgaggtgagtgatcagtactgcagatcc
tgggagacagaacagatacagtgattcgtcttatgtccacacgagtaagg
aaccttagtgggctgatgctctcctgtacctgggtgaggagatgggacca
cacagtgcaggaaactggaagtactatttactttggtttggtttttcttc
ggggaagcctgttgtgtttggctgaccatttagaataaagatattaggag
tgaagccacagtgtgccagagggtgatctttctaacaaactgacttttct
gtgtgcctatagcttcttcacaccccagcccatgtcctgccatcagcttc
tttctgggtctctctgtttgtaaactcgctgctgcgtctaaaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544645_1544796
seq2: B6Ng01-022I13.b_46_204

seq1  GAATCCATAGCCACTATGGCTCAAGATCTCCATACCAAGATCCAGATAAG  50
      |||| |||| |||||||| |||||||||||||||||||||||||| | ||
seq2  GAATTCATACCCACTATGCCTCAAGATCTCCATACCAAGATCCAGGTCAG  50

seq1  -------GATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAA  93
              |||||| ||||| ||||| ||| ||||||| |||||||||||
seq2  AAACTTCTATCTCCCAGCCTTCAGATTAGGATCACTGGGGAGCCTTCCAA  100

seq1  TTCCGGATTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATA  143
      ||| | |||||||||||||||| |||| |||||||||||| |||||||||
seq2  TTCTGAATTGTAGTTCATTCCAGATATAGTCAAGTTGACAGCCAGGAATA  150

seq1  GCCACTACA  152
      |||||||||
seq2  GCCACTACA  159

seq1: chr1_45878814_45879813
seq2: B6Ng01-022I13.g_71_1066

seq1  GAATTCTGCTTAGTCCCATCCTTGTACTGTATTTCAGTTTTTGCCTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTAGTCCCATCCTTGTACTGTATTTCAGTTTTTGCCTATTT  50

seq1  TGTGGGCAGTTTTGTCATGTGTATCAACAACACACACAACACCCCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGTTTTGTCATGTGTATCAACAACACACACAACACCCCTTGCT  100

seq1  TTTGTCTTAGAATATTGTTTTCTTGACTCTACTAAGGTTTTATTCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTAGAATATTGTTTTCTTGACTCTACTAAGGTTTTATTCTTTAA  150

seq1  CCTGCTGCATCCTTCCAGGTTGTCGCTGTGTGACCTTGCCCCAGTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCATCCTTCCAGGTTGTCGCTGTGTGACCTTGCCCCAGTTCTTT  200

seq1  GCCAGTATGAGCATATGGCCTCTGAAAACACGTTCCTGTAATCTTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTATGAGCATATGGCCTCTGAAAACACGTTCCTGTAATCTTTATAA  250

seq1  TCCCTAGCAAGGAAGGCATGGTTCTCTCATTAGTGTCTTTGGCTAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCAAGGAAGGCATGGTTCTCTCATTAGTGTCTTTGGCTAGCTTT  300

seq1  CCCATGTAGAAAGTGGGGCACTGGGCATCAGTTGCTTTGTCTATGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAGAAAGTGGGGCACTGGGCATCAGTTGCTTTGTCTATGGCCTG  350

seq1  AGAGTAACATCATGTGATTTCAAGCTTTTCACCAGAGTCATTTTATAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAACATCATGTGATTTCAAGCTTTTCACCAGAGTCATTTTATAGTT  400

seq1  CAGTGACCCTTAACCTGTTCAGTCAAAGAATTTCCATCTTTTTATTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCCTTAACCTGTTCAGTCAAAGAATTTCCATCTTTTTATTGAAA  450

seq1  TAATTTCCTCTTCTCTTACATCCATACAGCTGCTGGCAGAAGAAAGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCTCTTCTCTTACATCCATACAGCTGCTGGCAGAAGAAAGTTTG  500

seq1  CCAACGACCCCATTTTCTTTCATATTGGGAAAACACAGGCAACAGCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGACCCCATTTTCTTTCATATTGGGAAAACACAGGCAACAGCAGGG  550

seq1  TGCAAAGTTAACAGAAACTTCAGAGAATGAACTGGTACAACTCCCCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTTAACAGAAACTTCAGAGAATGAACTGGTACAACTCCCCTTAA  600

seq1  CAGAGAACATACCTGCAATTACTGAGGTGAGTGATCAGTACTGCAGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACATACCTGCAATTACTGAGGTGAGTGATCAGTACTGCAGATCC  650

seq1  TGGGAGACAGAACAGATACAGTGATTCGTCTTATGTCCACACGAGTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACAGAACAGATACAGTGATTCGTCTTATGTCCACACGAGTAAGG  700

seq1  AACCTTAGTGGGCTGATGCTCTCCTGTACCTGGGTGAGGAGATGGGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGTGGGCTGATGCTCTCCTGTACCTGGGTGAGGAGATGGGACCA  750

seq1  CACAGTGCAGGAAACTGGAAGTACTATTTACTTTGGTTTGGTTTTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCAGGAAACTGGAAGTACTATTTACTTTGGTTTGGTTTTTCTTC  800

seq1  GGGGAAGCCTGTTGTGTTTGGCTGACCATTTAGAATAAAAGATATTAGGA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGGAAGCCTGTTGTGTTTGGCTGACCATTTAGAAT-AAAGATATTAGGA  849

seq1  GGTGAAGCCACAGTGTGCCAGAGGGTGATCTTTCTAACAAACTGACTTTT  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTGAAGCCACAGTGTGCCAGAGGGTGATCTTTCTAACAAACTGACTTTT  898

seq1  CTGTGTGCCTATAGCTTCTTCACACCCCAGCCCATGTCCTGCCATCAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCTATAGCTTCTTCACACCCCAGCCCATGTCCTGCCATCAGCT  948

seq1  TCTTTCTTGTGCTCTCTGTTTGTAAACTCGCTGCTGCTGTCTAAAGAGAC  1000
      ||||||| |  |||||||||||||||||||||||||| ||||||| ||||
seq2  TCTTTCTGGGTCTCTCTGTTTGTAAACTCGCTGCTGC-GTCTAAA-AGAC  996