BAC Information

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BAC

Clone NameB6Ng01-022M02
Chromosome7 (Build37)1 (Build37)
Map Location 134,002,574 - 134,003,311122,474,596 - 122,474,681
singlet/doubletsingletsinglet
Overlap geneCcdc95
Upstream geneD430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a
Downstream geneHirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022M02.bB6Ng01-022M02.g
ACCDH854872DH854873
length741356
definitionDH854872|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M02, 5' end.DH854873|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,002,574 - 134,003,311)(122,474,596 - 122,474,681)
sequence
gaattcaatccccaggtcttacactgtaggagacaaggttctcttcagct
gtactctgacctccacgtgagtgtgcccatatgcacacaaataagtaaac
gtaactctttttttttaatttaaatataagtttcaacctagctaaatgaa
actatgtttcaaagaaaagggggtgggttgtgaagcaaagtttggtggaa
caggcctttaatcccagcccgtcttgagaggtacaggcaggagaaccatg
agttcatacggctacacaatgctgtctctaagtaaaaatgaaaagctaca
aatgcaaaacccacctgggcatggtgccttgtatctgtaatcccagcatt
gggaagctgagacaggaggatatatcgctctaagttccaagccggcttga
gctacaaagtaagaccctgtctcaaataaaactaaacaaatgagagccag
ttaggcatggtgaaacatgtctctaatgttaacacttcggccggtgagct
tgaaagccagcctcgtctacatattgaattccaagccaacctgggttacc
cagagccatcttatcaacagtatgttccagcttgtagagcacagaaaagc
aagtatgatctgaactgtgtatgaatgagaaaacaacttttaagcggtgt
gtaggaattgaagcagcagtttcacctgtgagtgatgtctaggtgagtgg
tgttgatgaggacgggttgttgtgtgcgggcagagcagaaa
gaattcaaataagctttgatagtgttgatttggagggctttgttttctgg
tgtcctccttgccctctggttcttagactctttccacttcctctttcttg
gggttccctgagcccgaggggagggatttaatagagccatcccttttaag
gctgtgtgttccaaggtctttcactctgcataacatctgcctgtaggtct
ctgtttgttcccctctgggcaggaggatcttgcgcgcgcccaactcgacc
agcaagaacgacgctgcaacaggatccttctgcacacgtttattgggaga
gcttgattgcagaggcgaagagacccggagcccagaactggtgctgctta
tatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134002574_134003311
seq2: B6Ng01-022M02.b_40_780 (reverse)

seq1  TTTCTGCTCTTGCCGCACACACCGA-CCGTCCTCATCAACACCACTCACC  49
      ||||||||||  ||||||||| | | ||||||||||||||||||||||||
seq2  TTTCTGCTCTGCCCGCACACAACAACCCGTCCTCATCAACACCACTCACC  50

seq1  TAGACATCACTCACAGGTG-AACTGCTGCTTCAATTCCTACACACCGCTT  98
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGACATCACTCACAGGTGAAACTGCTGCTTCAATTCCTACACACCGCTT  100

seq1  -AAAGTTGTTTTCTCATTCATACACAGTTCAGATCATACTTGCTTTTCTG  147
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTTTTCTCATTCATACACAGTTCAGATCATACTTGCTTTTCTG  150

seq1  TGCTCTACAAGCTGGAACATACTGTTGATAAGATGGCTCTGGGTAACCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTACAAGCTGGAACATACTGTTGATAAGATGGCTCTGGGTAACCCA  200

seq1  GGTTGGCTTGGAATTCAATATGTAGACGAGGCTGGCTTTCAAGCTCACCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTTGGAATTCAATATGTAGACGAGGCTGGCTTTCAAGCTCACCG  250

seq1  GCCGAAGTGTTAACATTAGAGACATGTTTCACCATGCCTAACTGGCTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGTGTTAACATTAGAGACATGTTTCACCATGCCTAACTGGCTCTC  300

seq1  ATTTGTTTAGTTTTATTTGAGACAGGGTCTTACTTTGTAGCTCAAGCCGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAGTTTTATTTGAGACAGGGTCTTACTTTGTAGCTCAAGCCGG  350

seq1  CTTGGAACTTAGAGCGATATATCCTCCTGTCTCAGCTTCCCAATGCTGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTTAGAGCGATATATCCTCCTGTCTCAGCTTCCCAATGCTGGG  400

seq1  ATTACAGATACAAGGCACCATGCCCAGGTGGGTTTTGCATTTGTAGCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATACAAGGCACCATGCCCAGGTGGGTTTTGCATTTGTAGCTTT  450

seq1  TCATTTTTACTTAGAGACAGCATTGTGTAGCCGTATGAACTCATGGTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTACTTAGAGACAGCATTGTGTAGCCGTATGAACTCATGGTTCT  500

seq1  CCTGCCTGTACCTCTCAAGACGGGCTGGGATTAAAGGCCTGTTCCACCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTACCTCTCAAGACGGGCTGGGATTAAAGGCCTGTTCCACCAA  550

seq1  ACTTTGCTTCACAACCCACCCCCTTTTCTTTGAAACATAGTTTCATTTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTTCACAACCCACCCCCTTTTCTTTGAAACATAGTTTCATTTAG  600

seq1  CTAGGTTGAAACTTATATTTAAATTAAAAAAAAAGAGTTACGTTTACTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGAAACTTATATTTAAATTAAAAAAAAAGAGTTACGTTTACTTA  650

seq1  TTTGTGTGCATATGGGCACACTCACGTGGAGGTCAGAGTACAGCTGAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGCATATGGGCACACTCACGTGGAGGTCAGAGTACAGCTGAAGA  700

seq1  GAACCTTGTCTCCTACAGTGTAAGACCTGGGGATTGAATTC  738
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGTCTCCTACAGTGTAAGACCTGGGGATTGAATTC  741

seq1: chr1_122474596_122474681
seq2: B6Ng01-022M02.g_339_424 (reverse)

seq1  CCTATATAAGCAGCACCATTTCTGGGCTCAGGGTCT-TTCGCCTATGCAG  49
      |||||||||||||||||| |||||||||| |||||| ||||||| |||| 
seq2  CCTATATAAGCAGCACCAGTTCTGGGCTCCGGGTCTCTTCGCCTCTGCAA  50

seq1  TCAATGCTCTCCCAATAAACATGTGCAGAAGGATCCT  86
      |||| ||||||||||||||| ||||||||||||||||
seq2  TCAA-GCTCTCCCAATAAACGTGTGCAGAAGGATCCT  86