BAC Information

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BAC

Clone NameB6Ng01-022O01
Chromosome8 (Build37)1 (Build37)
Map Location 61,888,527 - 61,889,57680,970,072 - 80,970,451
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022O01.bB6Ng01-022O01.g
ACCDH854959DH854960
length1,03666
definitionDH854959|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O01, 5' end.DH854960|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,888,527 - 61,889,576)(80,970,072 - 80,970,451)
sequence
gaattctcctgtctctgcttttcattatatttaaaaaataatttttttct
taactgtttactattaaaataaaaataaaagcaattgacataagtataat
cattattaaaaagaaagatagaagggataactaaaatgtaaagaattaaa
caaacagaaaataatttatattttattattttccctaggttagagtgctt
tcctagaagtgtgacaaattaaaataataggtataaaatgacagttgatt
tcaccttatactataacatccaacatttctataatccttgcagaggaaaa
aaaaagccaatctgaagtaatgctgagaatatctctgagaaatgattctg
acattgataccaaaggctgtcagccactaaagtctgattaaacagattag
gtcaagcactgttttattagccgtattacaagggagatgacatattgaaa
atctttagcactggtttcctgtcagtagtgaaaaattttacattaacatg
atatcaatctctccattccaagtgttattcatcatattgaatagattgaa
gtggtagccagatgaccagcaacgtagattgattttggcataaaatagtc
tggataaaaagtgaatcagacatgaaagtggattgaatcctaggctgaaa
cctaagtccagaagtgaggaacttttggcaacctacgaagaaataagtag
agtcctttgaggaccaaaacataacactgtccagtcaatgaacagtgaag
ggttagccaccaactgaggcaagtagggcacagacaatgctgaaatctct
gctgctcatgtccagagtctgcagcatctagaaaagttatggcgtagtag
acattagtgggcaaaatattcagagaccaactgcttctaatggtttgtta
aaactaacaaacaaaagctatctgtacttgtgatgttagtattcctacca
tcatgggtgaccttcaggaaagtttatactggaccagagacaaggagttt
gcagattcctacgaaaggagatagaagatgtctctg
tctggggtttttttgtttgtttgtttgtttgtttgcttgtttgtttttta
cttttgattttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_61888527_61889576
seq2: B6Ng01-022O01.b_43_1078 (reverse)

seq1  CAGAG-CATCTCTCTATCTACCTTCTGGTAGGAAATCTGCTAACTCCTGG  49
      ||||| ||||| ||||||| | |||  ||||| ||||||| ||||||| |
seq2  CAGAGACATCT-TCTATCTCCTTTC--GTAGG-AATCTGCAAACTCCTTG  46

seq1  TCTCTTGGTTCCAGTAATAAACTTTTCCTGAAGGTCACCCATGATGGTTA  99
      |||||  | |||||| |||||| |||||||||||||||||||||||| ||
seq2  TCTCT--GGTCCAGT-ATAAAC-TTTCCTGAAGGTCACCCATGATGG-TA  91

seq1  GGAATACTAACATCACAAGTACAGATAGCTTTTTGTTTGTTAGTTTTTAA  149
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  GGAATACTAACATCACAAGTACAGATAGC-TTTTGTTTGTTAG-TTTTAA  139

seq1  CAAACCATTTAGAAGCAGTTGGTTCTCTGAATATTTTTGCCCACTAATGT  199
      ||||||| |||||||||||||| |||||||||| ||||||||||||||||
seq2  CAAACCA-TTAGAAGCAGTTGG-TCTCTGAATA-TTTTGCCCACTAATGT  186

seq1  CTACCTACGCCATAACTTTTCTAGATGCTGCAGACTCTGGACATGAGCAG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTA-CTACGCCATAACTTTTCTAGATGCTGCAGACTCTGGACATGAGCAG  235

seq1  CAGAGATTTCAGCATTGTCTGTGCCCTACTTGCCTCAGTTGGTGGCTAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTTCAGCATTGTCTGTGCCCTACTTGCCTCAGTTGGTGGCTAAC  285

seq1  CCTTCACTGTTCATTGACTGGACAGTGTTATGTTTTGGTCCTCAAAGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTGTTCATTGACTGGACAGTGTTATGTTTTGGTCCTCAAAGGAC  335

seq1  TCTACTTATTTCTTCGTAGGTTGCCAAAAGTTCCTCACTTCTGGACTTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTATTTCTTCGTAGGTTGCCAAAAGTTCCTCACTTCTGGACTTAG  385

seq1  GTTTCAGCCTAGGATTCAATCCACTTTCATGTCTGATTCACTTTTTATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCCTAGGATTCAATCCACTTTCATGTCTGATTCACTTTTTATCC  435

seq1  AGACTATTTTATGCCAAAATCAATCTACGTTGCTGGTCATCTGGCTACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTTTATGCCAAAATCAATCTACGTTGCTGGTCATCTGGCTACCA  485

seq1  CTTCAATCTATTCAATATGATGAATAACACTTGGAATGGAGAGATTGATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCTATTCAATATGATGAATAACACTTGGAATGGAGAGATTGATA  535

seq1  TCATGTTAATGTAAAATTTTTCACTACTGACAGGAAACCAGTGCTAAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAATGTAAAATTTTTCACTACTGACAGGAAACCAGTGCTAAAGA  585

seq1  TTTTCAATATGTCATCTCCCTTGTAATACGGCTAATAAAACAGTGCTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATATGTCATCTCCCTTGTAATACGGCTAATAAAACAGTGCTTGA  635

seq1  CCTAATCTGTTTAATCAGACTTTAGTGGCTGACAGCCTTTGGTATCAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCTGTTTAATCAGACTTTAGTGGCTGACAGCCTTTGGTATCAATG  685

seq1  TCAGAATCATTTCTCAGAGATATTCTCAGCATTACTTCAGATTGGCTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCATTTCTCAGAGATATTCTCAGCATTACTTCAGATTGGCTTTT  735

seq1  TTTTTCCTCTGCAAGGATTATAGAAATGTTGGATGTTATAGTATAAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTGCAAGGATTATAGAAATGTTGGATGTTATAGTATAAGGTG  785

seq1  AAATCAACTGTCATTTTATACCTATTATTTTAATTTGTCACACTTCTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACTGTCATTTTATACCTATTATTTTAATTTGTCACACTTCTAGG  835

seq1  AAAGCACTCTAACCTAGGGAAAATAATAAAATATAAATTATTTTCTGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTCTAACCTAGGGAAAATAATAAAATATAAATTATTTTCTGTTT  885

seq1  GTTTAATTCTTTACATTTTAGTTATCCCTTCTATCTTTCTTTTTAATAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTCTTTACATTTTAGTTATCCCTTCTATCTTTCTTTTTAATAAT  935

seq1  GATTATACTTATGTCAATTGCTTTTATTTTTATTTTAATAGTAAACAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATACTTATGTCAATTGCTTTTATTTTTATTTTAATAGTAAACAGTT  985

seq1  AAGAAAAAAATTATTTTTTAAATATAATGAAAAGCAGAGACAGGAGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAATTATTTTTTAAATATAATGAAAAGCAGAGACAGGAGAATT  1035

seq1  C  1050
      |
seq2  C  1036

seq1: chr1_80970072_80970451
seq2: B6Ng01-022O01.g_76_135

seq1  GTTTTTTTGTTTGTGTATTATGGTTTCTGATTTTGTGTTTTGGTAGGTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATGTATATGTGTGTATGTGCACAAATGTGTGTGCATGCATGTATGTGCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGTATGTGTATATGTTTCTTGTGTTTTTTGTTTTGTTTTATTCTGTTTTT  150
                            |||||||  |||||||        ||| 
seq2  ----------------------GTTTTTTTGTTTGTTT-------GTTTG  21

seq1  TTTGTTTGTTTGCTTGTATTTTTA--TTTGCTTGTCTGTTTTCTAAAGAG  198
      |||||||| ||| |||| ||||||  |||| || | | ||          
seq2  TTTGTTTGCTTGTTTGT-TTTTTACTTTTGATTTTTTTTT----------  60

seq1  AGCAAAGATTTGGAGTAGGTTGGGTGGAAAGTTAGGAGGACATGGGAGGA  248
                                                        
seq2  --------------------------------------------------  60

seq1  GCAAAAAGAGGGCAAACCACAATCACAATATATTGTATAAAAATTAATTT  298
                                                        
seq2  --------------------------------------------------  60

seq1  TAATAAAAACCTAAAAAAGTCATTTTAAATATATTTTGGACTATAAATTG  348
                                                        
seq2  --------------------------------------------------  60

seq1  ACTGTTGTTAGCAATACTTTTGATTTTTTTTT  380
                                      
seq2  --------------------------------  60