BAC Information

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BAC

Clone NameB6Ng01-023E07
Chromosome1 (Build37)
Map Location 24,546,406 - 24,686,703
singlet/doubletdoublet
Overlap geneCol19a1, LOC100040475, LOC665829, Lmbrd1
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023E07.bB6Ng01-023E07.g
ACCDH855235DH855236
length1,055366
definitionDH855235|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E07, 5' end.DH855236|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,546,406 - 24,547,468)(24,686,266 - 24,686,703)
sequence
gaattctaacattattccaatcaggtagcccaccgccctctgtgtaccca
catcctcactctttgtgaaggtcttaagactactgttatcttttgttgtt
gctgctgttcatataaaccaaaatatatagcactacgtgtacaggatggt
tggaatgtaaactttgggtgcttattccaaaccccctcacctatgtgtcc
ttagtaactacagtagtgaccacaaagggtagataataaatgtgagcaaa
tcagtaaatgaactgagcttgtcagctttgcagataaaaacgtggccctg
atcttgcctacccccattttgatatagctgtgcatataaaaatgtattca
cttcctcacatgcctcttgctcttctatatgaaaaacagagtggtgaatt
aacaatagtaagtggcatgggtccttgtgtagagaacacatatgaggact
acaggcaacagagcccagtccatctacagggacagctgttgtttagtgcc
agccagctggtaccatatgagatcatagactcagtgttgccagatcattc
acattttccagagaagccaaaaggctacagttttacctaaaaggtttcaa
atttaaaattttgacaattaatcacacttttcataaatactgtccagact
agtgagagacaagcagaacaaagccagtgcagtgaccaagaattagtaaa
cttggaattatactaacattggccgaattcttagctggtaaagaatactg
taaaactttaaaagatgacaaaaagaagccccccccttcaattaggggac
tgttaagaatgctacaatcagaaaaacatgtttagaatgaaaaacttaat
gctggaagtaaatgaattaaaaattccttataataaagcagatggtagtt
gtggagatattcatgatttgtcaagacatagtcttgagggtatagtagag
atgtcttacaataccttgctcatgtcgcagactcaagatactgccactga
tcctctaggcttgttactgattcatggaagaattttgctacttttcaact
cgagc
tctcctagtacagggctagatagcctccctccaggacacaagctaagcat
ggcccagggcaatgggatttgttaaagtgaagggagcatgccagtactaa
gactgaatttagggttcctgaacatgcaaggcaagtgtcgtgtgcgtgtg
tgtgtctgtgtgtgtgtctgtatctctgtgtgtgtgtgtgtgtgcgcgcg
tgcgcgcgctacctgatgaaaaactgaaaaacttgactacctgaacaaac
tacccaagggtcagtatagggaatctgaaacacatctgactagtttcaaa
atgcaaacactaactgactttaggattgaagtctttgtagagtgtggaag
gattttacatatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24546406_24547468
seq2: B6Ng01-023E07.b_46_1089

seq1  GAATTCTAACATTATTCCAATCAGGTAGCCCACCGCCCTCTGTGTACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACATTATTCCAATCAGGTAGCCCACCGCCCTCTGTGTACCCA  50

seq1  CATCCTCACTCTTTGTGAAGGTCTTAAGACTACTGTTATCTTTTGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCACTCTTTGTGAAGGTCTTAAGACTACTGTTATCTTTTGTTGTT  100

seq1  GCTGCTGTTCATATAAACCAAAATATATAGCACTACGTGTACAGGATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTCATATAAACCAAAATATATAGCACTACGTGTACAGGATGGT  150

seq1  TGGAATGTAAACTTTGGGTGCTTATTCCAAACCCCCTCACCTATGTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTAAACTTTGGGTGCTTATTCCAAACCCCCTCACCTATGTGTCC  200

seq1  TTAGTAACTACAGTAGTGACCACAAAGGGTAGATAATAAATGTGAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACTACAGTAGTGACCACAAAGGGTAGATAATAAATGTGAGCAAA  250

seq1  TCAGTAAATGAACTGAGCTTGTCAGCTTTGCAGATAAAAACGTGGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAATGAACTGAGCTTGTCAGCTTTGCAGATAAAAACGTGGCCCTG  300

seq1  ATCTTGCCTACCCCCATTTTGATATAGCTGTGCATATAAAAATGTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTACCCCCATTTTGATATAGCTGTGCATATAAAAATGTATTCA  350

seq1  CTTCCTCACATGCCTCTTGCTCTTCTATATGAAAAACAGAGTGGTGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCACATGCCTCTTGCTCTTCTATATGAAAAACAGAGTGGTGAATT  400

seq1  AACAATAGTAAGTGGCATGGGTCCTTGTGTAGAGAACACATATGAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGTAAGTGGCATGGGTCCTTGTGTAGAGAACACATATGAGGACT  450

seq1  ACAGGCAACAGAGCCCAGTCCATCTACAGGGACAGCTGTTGTTTAGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAACAGAGCCCAGTCCATCTACAGGGACAGCTGTTGTTTAGTGCC  500

seq1  AGCCAGCTGGTACCATATGAGATCATAGACTCAGTGTTGCCAGATCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTGGTACCATATGAGATCATAGACTCAGTGTTGCCAGATCATTC  550

seq1  ACATTTTCCAGAGAAGCCAAAAGGCTACAGTTTTACCTAAAAGGTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCAGAGAAGCCAAAAGGCTACAGTTTTACCTAAAAGGTTTCAA  600

seq1  ATTTAAAATTTTGACAATTAATCACACTTTTCATAAATACTGTCCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATTTTGACAATTAATCACACTTTTCATAAATACTGTCCAGACT  650

seq1  AGTGAGAGACAAGCAGAACAAAGCCAGTGCAGTGACCAAGAATTAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGACAAGCAGAACAAAGCCAGTGCAGTGACCAAGAATTAGTAAA  700

seq1  CTTGGAATTATACTAACATTGGCCGAATTCTTAGCTGGTAAAGAATACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATTATACTAACATTGGCCGAATTCTTAGCTGGTAAAGAATACTG  750

seq1  TAAAACTTTAAAAGATGACAAAAAGAAGCCCCCCCCTTCAAATTAGGGGA  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAACTTTAAAAGATGACAAAAAGAAGCCCCCCCCTTC-AATTAGGGGA  799

seq1  CTGTTAAGAATGCTACAATCAGAAAAACATGTTTAGAATGAAAAACCTAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGTTAAGAATGCTACAATCAGAAAAACATGTTTAGAATGAAAAACTTAA  849

seq1  TGCTGGAAGTAAAATGAATTAAAAATTCCTATTAATAAAGCAAGATGGTA  900
      |||||||||| |||||||||||||||||||  ||||||||| ||||||||
seq2  TGCTGGAAGT-AAATGAATTAAAAATTCCTTATAATAAAGC-AGATGGTA  897

seq1  GTTGTTGGAGATTATCCCATGATCTGTCAAAGAACATAGCCATGAGGGTA  950
      |||| |||||||  |  |||||| ||||||   |||||| | ||||||||
seq2  GTTG-TGGAGATATT--CATGATTTGTCAA--GACATAGTCTTGAGGGTA  942

seq1  TAGTAAGAGATGTCTTACAATACCTTGCCTCAATGTCGCAGACTCTAGAT  1000
      |||| |||||||||||||||||||||| ||| ||||||||||||| ||||
seq2  TAGT-AGAGATGTCTTACAATACCTTG-CTC-ATGTCGCAGACTCAAGAT  989

seq1  CACTGCCAACTGCATCTCTAGGCTTGTTTACATTGATTCCATTGAAGCAT  1050
       |||||| ||||   |||||||||||||   | ||||| ||| ||||   
seq2  -ACTGCC-ACTGATCCTCTAGGCTTGTT---ACTGATT-CATGGAAG--A  1031

seq1  ATTTTGCTACTTT  1063
      |||||||||||||
seq2  ATTTTGCTACTTT  1044

seq1: chr1_24686266_24686703
seq2: B6Ng01-023E07.g_1_437 (reverse)

seq1  TTTCATATTGTCAAATCCTTCCCCACTCTACAAAGACTTCAGTCCTATGG  50
      ||||||| ||| |||||||||| |||||||||||||||||| |||||  |
seq2  TTTCATA-TGTAAAATCCTTCCACACTCTACAAAGACTTCAATCCTAAAG  49

seq1  TCAGTTAGTGTTTGCATTTTGAAACTCGTCCGATGTGTTTCAGATTCCCT  100
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TCAGTTAGTGTTTGCATTTTGAAACTAGTCAGATGTGTTTCAGATTCCCT  99

seq1  ATACTGACCCTTGGGTAGTTTGTTCAGGTAGTCAAGTTTTTCAGTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACCCTTGGGTAGTTTGTTCAGGTAGTCAAGTTTTTCAGTTTTTC  149

seq1  ATCAGGTAGCGCGCGCACGCGCGCACACACACACACACACAGAGATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTAGCGCGCGCACGCGCGCACACACACACACACACAGAGATACAG  199

seq1  ACACACACACAGACACACACACGCACACGACACTTGCCTTGCATGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGACACACACACGCACACGACACTTGCCTTGCATGTTCAG  249

seq1  GAACCCTAAATTCAGTCTTAGTACTGGCATGCTCCCTTCACTTTAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTAAATTCAGTCTTAGTACTGGCATGCTCCCTTCACTTTAACAAA  299

seq1  TCCCATTGCCCTGGGCCATGCTTAGCTTGTGTCCTGGAGGGAGGCTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGCCCTGGGCCATGCTTAGCTTGTGTCCTGGAGGGAGGCTATCT  349

seq1  AGCCCTGTACTAGGAGAGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNN  400
      |||||||||||||||||||||||                           
seq2  AGCCCTGTACTAGGAGAGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNN  399

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  438
                                            
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  437