BAC Information

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BAC

Clone NameB6Ng01-023G18
Chromosome1 (Build37)5 (Build37)
Map Location 111,649,393 - 111,649,88283,343,281 - 83,344,181
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023G18.bB6Ng01-023G18.g
ACCDH855346DH855347
length9791,018
definitionDH855346|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G18, 5' end.DH855347|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,649,393 - 111,649,882)(83,343,281 - 83,344,181)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtggccaacatcaaagtaaatggtcagaagctggaagcaatcccactaaa
tcagggactagacaaggctgcccactttctccctacctattcaaccttgt
acttgaattcctagccagagcaatttgccaacaaaaggagatcaagggga
ttcaaattggaaagaaagaagtcaaaatatcactttttacagaagatatg
atagtatatataagtgaccctaaaaattccaccagagaactccgaaacct
gataaacagctctgttgaagtggctggatataaaattatatcaaacaagt
taatggcctttctctacacaaagaataaacaggctgagaaagaaattagg
gaaacaacacccttctcaatagtcacaaataatataaaataccttggcat
gactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctc
tgaagaatgaaattaaagaagatctccgaaggtggaaaatctcccatgct
catggattggcaatatcaatatagtaaaaatggctatcttgccaaaagca
atcttcagattcaatgcaatccccatcaaaattccaactcaattcttcaa
tgcattagaaagaacaatctgcaaattcatctggaataacaaaaaaccta
ggatagcaaaaactctttctcaaggataaaagaacctctggtggaatcac
catgtctgacctaaagctgtactacagaggaattgtgcagtagcattgta
cagtttagatgcttctgagtccatatagaaccaccaagaagatttgaata
gcataatcaaaattcacagcacatatagattgcagataatttccatcatt
cccaagtacctttgatggggactgttttacttcctttctgttgctatata
aatgcccgaccaaagaaaaaaaaaaaaaa
gaattctcattttggctctctaccccatttttaattgggttatctgggtt
attggtgtttaacttttttagattttgtttttgtttttgttttacaaatg
tggatattatctttctgttagatgtagggttggtgaagatctgcttctaa
tctgtaggctgctattttgttctattgacagtgtcctttgccttacagac
acttgcagtttcatgaggtcccatttatcagttgttgatcttagagcctg
agcaattggtgctctgttccagaaagaacttcctgtaccaattagccttc
attgctattttccactttttctcctgtgatacttaggctttctcatttta
tgttgaagtctttaacccacttgggcttgagtttttgcacaggatgataa
atatgaatctaatggcttccttcttcatgtagaagtccatttagaccagt
accattttgttgaaaatgctttcattttttccattatatggttttgactt
ctttatcaaaaatccaagtgttcatatatgtgtgagtttatttctggaaa
ttgattgattccattgatagatctgtctgtatccattccaatcccatgca
attattattactattctttttgtctgtttgtctgtttttgtttttcgaga
cagggtttctctgtgtagccctggctgtcctggaacccactctgtagacc
aggctggcctcgaactcagaaatctgcctgcttttgctttccaggtgctg
ggattaaggcgtgcatgtgccacccttgaactattttttagcactgtttt
cattgtgtctcataaatttgggacagaatgttcaccttcattttactgaa
ttctagaaaattactaatttctttctcatttcatccctggtccagagatc
attgagtagagagttcttcagtttctatgagtgtgtagacattctggtga
ttttgtgttcttaaacatccagctttatacctgggtggtccgatataata
aataagtattccaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111649393_111649882
seq2: B6Ng01-023G18.b_155_643 (reverse)

seq1  ATTGCTTTTGGCAAGATAGCCATTTTTACAATATTGATCCTGCCAATCCA  50
      ||||||||||||||||||||||||||||| ||||||||  ||||||||||
seq2  ATTGCTTTTGGCAAGATAGCCATTTTTACTATATTGATATTGCCAATCCA  50

seq1  TGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCCTTAATTTCTTTCT  100
      |||||||||||||| |||||| |||| ||||||||| |||||||| ||||
seq2  TGAGCATGGGAGAT-TTTCCACCTTCGGAGATCTTCTTTAATTTCATTCT  99

seq1  TCAGAGATTTGAAGTTTTTATCATACAGATCTTTCACTTCCTTAGTTAGA  150
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTCCTTAGTTAGA  149

seq1  GTCACGCCAAGATATTTTATATTATTTGTGACTATTGAGAAGGGTGTTGT  200
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCCAAGGTATTTTATATTATTTGTGACTATTGAGAAGGGTGTTGT  199

seq1  TTCCCTAATTTCTTTCTCAGCCTGTTTATTCTCTGTATAGAGAAAGGCCA  250
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TTCCCTAATTTCTTTCTCAGCCTGTTTATTCTTTGTGTAGAGAAAGGCCA  249

seq1  TTGACTTGTTTGAGTTTATTTTATATCCAGCTACTTCACCGAAGCTGTTT  300
      || ||||||||||  | |||||||||||||| |||||| |  ||||||||
seq2  TTAACTTGTTTGATATAATTTTATATCCAGCCACTTCAACAGAGCTGTTT  299

seq1  ATCAGGTTTAGGAGTTCTCTGGTAGAATTTTTAGGGTCACTTATATATAC  350
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  ATCAGGTTTCGGAGTTCTCTGGTGGAATTTTTAGGGTCACTTATATATAC  349

seq1  TATCATATCATCTGCAAAAAGTGATATTTTGACTTCCTCTTTTCCAATTT  400
      ||||||||| |||| ||||||||||||||||||||| |  ||||||||||
seq2  TATCATATCTTCTGTAAAAAGTGATATTTTGACTTCTTTCTTTCCAATTT  399

seq1  GTATCCCCTTGATCTCCTTTTGTTGTCGAATTGCTCTGGCTAATACTTCA  450
      | ||||||||||||||||||||||| | ||||||||||||||  | ||||
seq2  GAATCCCCTTGATCTCCTTTTGTTGGCAAATTGCTCTGGCTAGGAATTCA  449

seq1  AGTACTATGTTGAAAAGGTAGGGAGAAAGTGGGCAGCCTT  490
      ||||| | |||||| |||||||||||||||||||||||||
seq2  AGTACAAGGTTGAATAGGTAGGGAGAAAGTGGGCAGCCTT  489

seq1: chr5_83343281_83344181
seq2: B6Ng01-023G18.g_188_1086

seq1  AGATGTAGGGTTGGTGAAGATCTGCTTCTAATCTGTAGGCTGCTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGGGTTGGTGAAGATCTGCTTCTAATCTGTAGGCTGCTATTTTG  50

seq1  TTCTATTGACAGTGTCCTTTGCCTTACAGACACTTGCAGTTTCATGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGACAGTGTCCTTTGCCTTACAGACACTTGCAGTTTCATGAGGT  100

seq1  CCCATTTATCAGTTGTTGATCTTAGAGCCTGAGCAATTGGTGCTCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTATCAGTTGTTGATCTTAGAGCCTGAGCAATTGGTGCTCTGTTC  150

seq1  CAGAAAGAACTTCCTGTACCAATTAGCCTTCATTGCTATTTTCCACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAACTTCCTGTACCAATTAGCCTTCATTGCTATTTTCCACTTTT  200

seq1  TCTCCTGTGATACTTAGGCTTTCTCATTTTATGTTGAAGTCTTTAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGATACTTAGGCTTTCTCATTTTATGTTGAAGTCTTTAACCCA  250

seq1  CTTGGGCTTGAGTTTTTGCACAGGATGATAAATATGAATCTAATGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTGAGTTTTTGCACAGGATGATAAATATGAATCTAATGGCTTC  300

seq1  CTTCTTCATGTAGAAGTCCATTTAGACCAGTACCATTTTGTTGAAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATGTAGAAGTCCATTTAGACCAGTACCATTTTGTTGAAAATGC  350

seq1  TTTCATTTTTTCCATTATATGGTTTTGACTTCTTTATCAAAAATCCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTCCATTATATGGTTTTGACTTCTTTATCAAAAATCCAAGT  400

seq1  GTTCATATATGTGTGAGTTTATTTCTGGAAATTGATTGATTCCATTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATATGTGTGAGTTTATTTCTGGAAATTGATTGATTCCATTGATA  450

seq1  GATCTGTCTGTATCCATTCCAATCCCATGCAATTATTATTACTATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCTGTATCCATTCCAATCCCATGCAATTATTATTACTATTCTTT  500

seq1  TTGTCTGTTTGTCTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTTTGTCTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGC  550

seq1  CCTGGCTGTCCTGGAACCCACTCTGTAGACCAGGCTGGCCTCGAACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACCCACTCTGTAGACCAGGCTGGCCTCGAACTCAG  600

seq1  AAATCTGCCTGCTTTTGCTTTCCAGGTGCTGGGATTAAGGCGTGCATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCCTGCTTTTGCTTTCCAGGTGCTGGGATTAAGGCGTGCATGTG  650

seq1  CCACCCTTGAACTATTTTTTAGCACTGTTTTCATTGTGTCTCATAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTGAACTATTTTTTAGCACTGTTTTCATTGTGTCTCATAAATTT  700

seq1  GGGACAGAATGTTCACCTTCATTTTCACTGAATTCTAGAAAATTACTAAT  750
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGACAGAATGTTCACCTTCATTTT-ACTGAATTCTAGAAAATTACTAAT  749

seq1  TTCTTTCTCATTTCATCCCTGGTCCAGAGATCATTGAGTAGAGAGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCATTTCATCCCTGGTCCAGAGATCATTGAGTAGAGAGTTCTT  799

seq1  CAGTTTCTATGAGTGTGTAGACATTCTTGGTGATTTTGTTGTTCTT-AAC  849
      |||||||||||||||||||||||||| ||||||||||| ||||||| |||
seq2  CAGTTTCTATGAGTGTGTAGACATTC-TGGTGATTTTG-TGTTCTTAAAC  847

seq1  ATCCAGCTTTAATACAT-GGTTGTCCGATAAATAAAATAAGTTTTCCAAT  898
      |||||||||| |||| | ||| |||||||| |  |||||||| |||||||
seq2  ATCCAGCTTT-ATACCTGGGTGGTCCGATATAATAAATAAGTATTCCAAT  896

seq1  TTT  901
      |||
seq2  TTT  899