BAC Information

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BAC

Clone NameB6Ng01-023H03
Chromosome1 (Build37)
Map Location 65,704,442 - 65,871,981
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023H03.bB6Ng01-023H03.g
ACCDH855364DH855365
length1,1111,190
definitionDH855364|Mus musculus domesticus DNA, BAC clone: B6Ng01-023H03, 5' end.DH855365|Mus musculus domesticus DNA, BAC clone: B6Ng01-023H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,704,442 - 65,705,565)(65,870,788 - 65,871,981)
sequence
gaattctcagggatctctgctcactattgcagtcagtgatagaaattttc
ccattcttaacagttcagcaaagaactccagtgatagtaactcagtaaca
gtttaataatgtgctgagtgtgtcaacctacactttcctaataatatcag
cctaaagatgagagtaaagatgtcactttgaagtgacaaggagacaaata
gatttcctttccacttgtagtcagaatgaagtaggtaataaatatcaaaa
tccctgggtaaaattaagccaaacctaaatataatgtggtaaagtacatt
taaaaggctatgtgtatgtatgtggaaaaatgtgtagagcatattccata
caacaaacaaggtctatagcctaggcaggaaataggaggtgtggcatttg
ggaggcagaaaggatcctgggagagtgcaggtaggaaattgacctagaaa
gatgtgacaagatggtacctgagcaattgaggagctcaaatcagccacag
ggcaaaatgtcgattaagataaatgggttattataagttatatctagtca
gagaagagcctagtaatacggccaaggtaaatgtaaatatattttgggtt
tgagacctatttctgggaaaatggctctgggagaaagaaccagacttaac
ctctatgctcctttcctctagttcctcttccttttttgtctcctctctct
cctttttttttttactccacacttctctcatttaagttgttattttttct
tagtctctccaaacttatctgtctctgcttcatctgttaagtgattgagc
agattatttataagcagaaagggaacaataaactccatcgttggctagca
ccttgatagaggattgaaagactgctggaagagttttaaaagtgtagaaa
gtttggcaggagagaacaattcaataggtgtggagaaatgataaaccaga
caaggaaaattcctagaagggagatgtggatggagagcagaactgtcagc
tcaatgttccccctctattcatactgtctaataaaggactgaggagctca
atggttatgtcagccttgacttggccttgttgctttactttctgacatta
aacacaagcca
gaattctagaaaaagtggatagaatgaattagggcaaattaactttaaat
agaattaaaaaaatataaccattggctgaattaaggggcttatgtattaa
tagatggttaaagaaggcatagttgggctttttgtttgttggtacatttt
attttcgtgttttaataaagactcaaataaaaaaaattctcgaatagaga
ttcattatatacaggaaattcaactttattcctaagttaacctgaatgta
atttttctcttttcatactggtaaagctggaaacagtattgtctactgaa
ttctttaaacaaatgtgaatacagaaacaagacaacttgttaggatagct
gattccagtatatctgggccagaaatttacagttatgtcagaaatggctt
aattctcaaaaactaaggctgttctggaagatacccaaaatggtctgaaa
aagagctaattggaaatagagaagccagtaattctatagaggaaatatat
cacgtgtgcttaaagcccacaaatcacaaagagctgaatcaaatattcat
tgtcacctttaaacagctgaagagtagacttgttactttgaaaattaaga
taggcagcagtgagcacaggcattctccttgcttttcctgttcacacagt
gctcagggatagttggtacaagcttttatttttaactatgtatgggaaag
aatggatacaatttggatatgtcaccttacagggacaaaggaaacataga
tctaggctcattgattactaagaaaaaatgacaaaggaattcatcataga
ttggccaagcttataacatccaacacaatgtcaatcatagcacttataaa
gatagctgtgttgggtatgaaataatacttgttggaagtatacaacactg
cctacaaaatagtaatgcaaagagtaacactggaatctagacaaacctct
acattgatcattgttcactagaattttctgtgataatgcacatgccatat
ccctatgataactcaaagcagcaactctgaccacattcacttattcttca
ctggtaaagtagtaggtggctatgaacaagactttctagattatttatta
ataaatatatatatgaatggttcactacatatttatatgtaggaggaggg
gaacctcattcattggaggccattggaggtctaagaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65704442_65705565
seq2: B6Ng01-023H03.b_47_1157

seq1  GAATTCTCAGGGATCTCTGCTCACTATTGCAGTCAGTGATAGAAATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGGATCTCTGCTCACTATTGCAGTCAGTGATAGAAATTTTC  50

seq1  CCATTCTTAACAGTTCAGCAAAGAACTCCAGTGATAGTAACTCAGTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTAACAGTTCAGCAAAGAACTCCAGTGATAGTAACTCAGTAACA  100

seq1  GTTTAATAATGTGCTGAGTGTGTCAACCTACACTTTCCTAATAATATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAATGTGCTGAGTGTGTCAACCTACACTTTCCTAATAATATCAG  150

seq1  CCTAAAGATGAGAGTAAAGATGTCACTTTGAAGTGACAAGGAGACAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGATGAGAGTAAAGATGTCACTTTGAAGTGACAAGGAGACAAATA  200

seq1  GATTTCCTTTCCACTTGTAGTCAGAATGAAGTAGGTAATAAATATCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTTCCACTTGTAGTCAGAATGAAGTAGGTAATAAATATCAAAA  250

seq1  TCCCTGGGTAAAATTAAGCCAAACCTAAATATAATGTGGTAAAGTACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGTAAAATTAAGCCAAACCTAAATATAATGTGGTAAAGTACATT  300

seq1  TAAAAGGCTATGTGTATGTATGTGGAAAAATGTGTAGAGCATATTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCTATGTGTATGTATGTGGAAAAATGTGTAGAGCATATTCCATA  350

seq1  CAACAAACAAGGTCTATAGCCTAGGCAGGAAATAGGAGGTGTGGCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAGGTCTATAGCCTAGGCAGGAAATAGGAGGTGTGGCATTTG  400

seq1  GGAGGCAGAAAGGATCCTGGGAGAGTGCAGGTAGGAAATTGACCTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAAAGGATCCTGGGAGAGTGCAGGTAGGAAATTGACCTAGAAA  450

seq1  GATGTGACAAGATGGTACCTGAGCAATTGAGGAGCTCAAATCAGCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGACAAGATGGTACCTGAGCAATTGAGGAGCTCAAATCAGCCACAG  500

seq1  GGCAAAATGTCGATTAAGATAAATGGGTTATTATAAGTTATATCTAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATGTCGATTAAGATAAATGGGTTATTATAAGTTATATCTAGTCA  550

seq1  GAGAAGAGCCTAGTAATACGGCCAAGGTAAATGTAAATATATTTTGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGCCTAGTAATACGGCCAAGGTAAATGTAAATATATTTTGGGTT  600

seq1  TGAGACCTATTTCTGGGAAAATGGCTCTGGGAGAAAGAACCAGACTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTATTTCTGGGAAAATGGCTCTGGGAGAAAGAACCAGACTTAAC  650

seq1  CTCTATGCTCCTTTCCTCTAGTTCCTCTTCCTTTTTTGTCTCCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCTCCTTTCCTCTAGTTCCTCTTCCTTTTTTGTCTCCTCTCTCT  700

seq1  CCTTTTTTTTTTTACTCCACACTTCTCTCATTTAAGTTGTTATTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTTTTACTCCACACTTCTCTCATTTAAGTTGTTATTTTTTCT  750

seq1  TAGTCTCTCCAAACTTATCTGTCTCTGCTTCATCTGTTAAGTGATTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTCCAAACTTATCTGTCTCTGCTTCATCTGTTAAGTGATTGAGC  800

seq1  AGATTATTTATAAGCAGAAAGGGAACAATAAACTCCATCGTTGGCTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTATAAGCAGAAAGGGAACAATAAACTCCATCGTTGGCTAGCA  850

seq1  CCTTGATAGAGGATTGAAAGACTGCTGGAAGAGTTTTAAAAGTGTAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATAGAGGATTGAAAGACTGCTGGAAGAGTTTTAAAAGTGTAGAAA  900

seq1  GTTTGGCAGGAGAGAACAATTCAATAGGTTGTGGAGAAATGATAAACCAG  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTTGGCAGGAGAGAACAATTCAATAGG-TGTGGAGAAATGATAAACCAG  949

seq1  ACAAGGAAAATTCCTAGAAGGGAAGATGT-GATGGAGAGCAGAACTGTCA  999
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  ACAAGGAAAATTCCTAGAAGGG-AGATGTGGATGGAGAGCAGAACTGTCA  998

seq1  GCCTCAAATGTTCCCACTCTATTCAGTACCTGTCTAAATGAACAGGACTG  1049
      | ||| ||||||||| ||||||||| || ||||||||    | |||||||
seq2  G-CTC-AATGTTCCCCCTCTATTCA-TA-CTGTCTAA---TAAAGGACTG  1041

seq1  AGGAGCTCAAATGGTTTATGTCAGCCATGACTTGGCCCTTGTTGCTATAG  1099
      |||||||| ||||| ||||||||||| |||||||| |||||||||| || 
seq2  AGGAGCTC-AATGG-TTATGTCAGCCTTGACTTGG-CCTTGTTGCTTTAC  1088

seq1  CTTCTGACATTAAAACACAAAGCCA  1124
       |||||||||| |||||| ||||||
seq2  TTTCTGACATT-AAACAC-AAGCCA  1111

seq1: chr1_65870788_65871981
seq2: B6Ng01-023H03.g_67_1256 (reverse)

seq1  GGATTCTTGTGACCTCCAATGACCTCCAATGATATGAGGTT-CACACATA  49
      ||||||||  ||||||||||| |||||||||| |||||||| | | | | 
seq2  GGATTCTT-AGACCTCCAATGGCCTCCAATGA-ATGAGGTTCCCCTCCTC  48

seq1  CTACATATAAATATATGTAGGTGAAACAATCATATATATTAATTA--AAT  97
      ||||||||||  ||||||| ||||| || ||||||||| || |||  |||
seq2  CTACATATAA--ATATGTA-GTGAACCATTCATATATA-TATTTATTAAT  94

seq1  AAATAAATCTAAGAAAAGTCCTTGTTCATAGGCACCTACTACTTTACAAG  147
      |||| ||||||   ||||| ||||||||||| ||||||||||||||| ||
seq2  AAAT-AATCTA--GAAAGT-CTTGTTCATAGCCACCTACTACTTTACCAG  140

seq1  TG-AGAAT-AGTGAATGTGGTCAGGGTTGCTGCTTTGAG-TATCATAGGG  194
      || ||||| ||||||||||||||| |||||||||||||| ||||||||||
seq2  TGAAGAATAAGTGAATGTGGTCAGAGTTGCTGCTTTGAGTTATCATAGGG  190

seq1  ATATGGCATGTGCATTATCACAGAAGATTCTAGTGAACAATGATCAATGT  244
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATATGGCATGTGCATTATCACAGAAAATTCTAGTGAACAATGATCAATGT  240

seq1  AGAGGTTTGTCTAGATTCCAGTGTTACTCTTTGCATTACTATTTTGTAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTGTCTAGATTCCAGTGTTACTCTTTGCATTACTATTTTGTAGG  290

seq1  CAGTGTTGTATACTTCCAACAAGTATTATTTCATACCCAACACAGCTATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGTATACTTCCAACAAGTATTATTTCATACCCAACACAGCTATC  340

seq1  TTTATAAGTGCTATGATTGACATTGTGTTGGATGTTATAAGCTTGGCCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGTGCTATGATTGACATTGTGTTGGATGTTATAAGCTTGGCCAA  390

seq1  TCTATGATGAATTCCTTTGTCATTTTTTCTTAGTAATCAATGAGCCTAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATGAATTCCTTTGTCATTTTTTCTTAGTAATCAATGAGCCTAGA  440

seq1  TCTATGTTTCCTTTGTCCCTGTAAGGTGACATATCCAAATTGTATCCATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTTCCTTTGTCCCTGTAAGGTGACATATCCAAATTGTATCCATT  490

seq1  CTTTCCCATACATAGTTAAAAATAAAAGCTTGTACCAACTATCCCTGAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCATACATAGTTAAAAATAAAAGCTTGTACCAACTATCCCTGAGC  540

seq1  ACTGTGTGAACAGGAAAAGCAAGGAGAATGCCTGTGCTCACTGCTGCCTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGAACAGGAAAAGCAAGGAGAATGCCTGTGCTCACTGCTGCCTA  590

seq1  TCTTAATTTTCAAAGTAACAAGTCTACTCTTCAGCTGTTTAAAGGTGACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTTCAAAGTAACAAGTCTACTCTTCAGCTGTTTAAAGGTGACA  640

seq1  ATGAATATTTGATTCAGCTCTTTGTGATTTGTGGGCTTTAAGCACACGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTTGATTCAGCTCTTTGTGATTTGTGGGCTTTAAGCACACGTG  690

seq1  ATATATTTCCTCTATAGAATTACTGGCTTCTCTATTTCCAATTAGCTCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCCTCTATAGAATTACTGGCTTCTCTATTTCCAATTAGCTCTT  740

seq1  TTTCAGACCATTTTGGGTATCTTCCAGAACAGCCTTAGTTTTTGAGAATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACCATTTTGGGTATCTTCCAGAACAGCCTTAGTTTTTGAGAATT  790

seq1  AAGCCATTTCTGACATAACTGTAAATTTCTGGCCCAGATATACTGGAATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTTCTGACATAACTGTAAATTTCTGGCCCAGATATACTGGAATC  840

seq1  AGCTATCCTAACAAGTTGTCTTGTTTCTGTATTCACATTTGTTTAAAGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCTAACAAGTTGTCTTGTTTCTGTATTCACATTTGTTTAAAGAA  890

seq1  TTCAGTAGACAATACTGTTTCCAGCTTTACCAGTATGAAAAGAGAAAAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGACAATACTGTTTCCAGCTTTACCAGTATGAAAAGAGAAAAAT  940

seq1  TACATTCAGGTTAACTTAGGAATAAAGTTGAATTTCCTGTATATAATGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAGGTTAACTTAGGAATAAAGTTGAATTTCCTGTATATAATGAA  990

seq1  TCTCTATTCGAGAATTTTTTTTATTTGAGTCTTTATTAAAACACGAAAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTCGAGAATTTTTTTTATTTGAGTCTTTATTAAAACACGAAAAT  1040

seq1  AAAATGTACCAACAAACAAAAAGCCCAACTATGCCTTCTTTAACCATCTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTACCAACAAACAAAAAGCCCAACTATGCCTTCTTTAACCATCTA  1090

seq1  TTAATACATAAGCCCCTTAATTCAGCCAATGGTTATATTTTTTTAATTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACATAAGCCCCTTAATTCAGCCAATGGTTATATTTTTTTAATTCT  1140

seq1  ATTTAAAGTTAATTTGCCCTAATTCATTCTATCCACTTTTTCTAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTTAATTTGCCCTAATTCATTCTATCCACTTTTTCTAGAATTC  1190