BAC Information

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BAC

Clone NameB6Ng01-023I20
Chromosome1 (Build37)
Map Location 78,600,650 - 78,791,443
singlet/doubletdoublet
Overlap geneAcsl3, Utp14b, LOC620521
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
Downstream geneKcne4, LOC100039260, EG545332, Scg2, Ap1s3, Wdfy1, Mrpl44, Serpine2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023I20.bB6Ng01-023I20.g
ACCDH855440DH855441
length966495
definitionDH855440|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I20, 5' end.DH855441|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,790,467 - 78,791,443)(78,600,650 - 78,601,150)
sequence
gaattcacctcacatcacccagacagctctgaaggcatcctgtacccctg
agttgctgcttgctgggttcccaaactgttctcatacagtgggttcaccc
ctcccccctcctctactcctcccaccttcaccttcaccttcttctgcctc
caaggactactacaagaaacaaggctatatgccatccttttaaaaaaaat
catgcttttcccttggatctaaggatatgttgtccctctctgctttccga
aatatttaactataagccagcttacatcaagggactttttgtgaagcata
acatggtgtgtatcaggcaataggctcccagctataagaacatcgtcttt
ataatagttttcctcacagaacccatccagagcctgtgatttgaacagtg
atttatttgatttctcagtattctaacacttttctgaacaaacatcttcc
ttacaagatggctacacctgtgagcaagagcttatagcaacctaaagccc
catccatattccttctcactaagatcactatgtctgccctggtgactaac
agtattttcctctctcctcaacaggacaagtcaacaagtatctgcagttg
gctccatccctggctcactcccaccaaaactcctcttcttaaacatactc
acagccaaaaaagagaccatcatcttgacttggtaactagacactaggga
aaagggaggcaaaaaggaaaaactgagttcaaagactagggctgagtggg
atgggtttgaggtttggatcggatccagtttctgattttgggactcttct
cacggactaagacatgagtcctgggaattccagagagaacagtataattg
gtctcactcttcagagggcaccctaatatggacatcatgcactgggcatt
gtcagtgagtataccctccaaacctgtggtcagggaagtattttgtattt
ggctgctctctaccgg
atggacatagacatacacataattcaaaagaaaaaactcaaaacatacag
aaaaaaaatagtgtattataatattgttttgctgtattctttgttccttt
aatattttttctttcatggcaatcttgtctggaaaataatgtttaagcct
aaattattttgtaaagctcagattacatgtagctggggtaaaaatagtca
ggaaactgcctgggacacaaagtttaacacagaagatgtaaaaggagagt
tgagcgcttggttttcctaatctaagaatggtacatttttctgagaccct
gtggcacggtttggataaaatagaagagataaagaaaaaaaaaggcagca
gtggctcctttcttcttctttacatgctcccagccaccaaagagttaagt
gggacatggcaatctttatataatggttaatcttataaatgtagggttcg
ggcactcaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78790467_78791443
seq2: B6Ng01-023I20.b_41_1007 (reverse)

seq1  CCAGTAGAGTAGCAGCCAACTACAGAAAATCTTCCCTGGACCACTGGTTT  50
      || |||||| ||||||||| |||| |||  ||||||| |||||| |||||
seq2  CCGGTAGAG-AGCAGCCAAATACA-AAATACTTCCCT-GACCACAGGTTT  47

seq1  CTGAGGGTCTGCCTCACCTGACACTGCCCAGCTGCATGATGTCCTTCTTA  100
        |||||| |  |||| |||||| ||||||| |||||||||||| | |||
seq2  -GGAGGGTAT-ACTCA-CTGACAATGCCCAG-TGCATGATGTCCATATTA  93

seq1  GGGTGCCCTCTGAAAGAGTGAGA-CAATTCTACTGTTCTCTCTGGGAATT  149
      |||||||||||| |||||||||| ||||| ||||||||||||| ||||||
seq2  GGGTGCCCTCTG-AAGAGTGAGACCAATTATACTGTTCTCTCT-GGAATT  141

seq1  CCCAGGACTCATGTCTTAGTCCCTGAGAATGAGTCCCAAAATCAGAGAAC  199
      |||||||||||||||||||||| |||||| |||||||||||||||| |||
seq2  CCCAGGACTCATGTCTTAGTCCGTGAGAA-GAGTCCCAAAATCAGA-AAC  189

seq1  TGGATCCGATCCAAACCTCAAACCCATCCCACTCAGCCCTAGTCTTTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCGATCCAAACCTCAAACCCATCCCACTCAGCCCTAGTCTTTGAA  239

seq1  CTCAGTTTTTCCTTTTTGCCTCCCTTTTCCCTAGTGTCTAGTTACCAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTTTCCTTTTTGCCTCCCTTTTCCCTAGTGTCTAGTTACCAAGT  289

seq1  CAAGATGATGGTCTCTTTTTTGGCTGTGAGTATGTTTAAGAAGAGGAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGATGGTCTCTTTTTTGGCTGTGAGTATGTTTAAGAAGAGGAGTT  339

seq1  TTGGTGGGAGTGAGCCAGGGATGGAGCCAACTGCAGATACTTGTTGACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGAGTGAGCCAGGGATGGAGCCAACTGCAGATACTTGTTGACTT  389

seq1  GTCCTGTTGAGGAGAGAGGAAAATACTGTTAGTCACCAGGGCAGACATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTGAGGAGAGAGGAAAATACTGTTAGTCACCAGGGCAGACATAG  439

seq1  TGATCTTAGTGAGAAGGAATATGGATGGGGCTTTAGGTTGCTATAAGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAGTGAGAAGGAATATGGATGGGGCTTTAGGTTGCTATAAGCTC  489

seq1  TTGCTCACAGGTGTAGCCATCTTGTAAGGAAGATGTTTGTTCAGAAAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACAGGTGTAGCCATCTTGTAAGGAAGATGTTTGTTCAGAAAAGT  539

seq1  GTTAGAATACTGAGAAATCAAATAAATCACTGTTCAAATCACAGGCTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATACTGAGAAATCAAATAAATCACTGTTCAAATCACAGGCTCTG  589

seq1  GATGGGTTCTGTGAGGAAAACTATTATAAAGACGATGTTCTTATAGCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTCTGTGAGGAAAACTATTATAAAGACGATGTTCTTATAGCTGG  639

seq1  GAGCCTATTGCCTGATACACACCATGTTATGCTTCACAAAAAGTCCCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATTGCCTGATACACACCATGTTATGCTTCACAAAAAGTCCCTTG  689

seq1  ATGTAAGCTGGCTTATAGTTAAATATTTCGGAAAGCAGAGAGGGACAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGCTGGCTTATAGTTAAATATTTCGGAAAGCAGAGAGGGACAACA  739

seq1  TATCCTTAGATCCAAGGGAAAAGCATGATTTTTTTTAAAAGGATGGCATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAGATCCAAGGGAAAAGCATGATTTTTTTTAAAAGGATGGCATA  789

seq1  TAGCCTTGTTTCTTGTAGTAGTCCTTGGAGGCAGAAGAAGGTGAAGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGTTTCTTGTAGTAGTCCTTGGAGGCAGAAGAAGGTGAAGGTGA  839

seq1  AGGTGGGAGGAGTAGAGGAGGGGGGAGGGGTGAACCCACTGTATGAGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGGAGTAGAGGAGGGGGGAGGGGTGAACCCACTGTATGAGAAC  889

seq1  AGTTTGGGAACCCAGCAAGCAGCAACTCAGGGGTACAGGATGCCTTCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGAACCCAGCAAGCAGCAACTCAGGGGTACAGGATGCCTTCAGA  939

seq1  GCTGTCTGGGTGATGTGAGGTGAATTCC  977
      ||||||||||||||||||||||||||||
seq2  GCTGTCTGGGTGATGTGAGGTGAATTCC  967

seq1: chr1_78600650_78601150
seq2: B6Ng01-023I20.g_68_568

seq1  GAATTCATGGACATAGACATACACATAATTCAAAAGAAAAAACTCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGACATAGACATACACATAATTCAAAAGAAAAAACTCAAAAC  50

seq1  ATACAGAAAAAAAATAGTGTATTATAATATTGTTTTGCTGTATTCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAAAAAATAGTGTATTATAATATTGTTTTGCTGTATTCTTTGT  100

seq1  TCCTTTAATATTTTTTCTTTCATGGCAATCTTGTCTGGAAAATAATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAATATTTTTTCTTTCATGGCAATCTTGTCTGGAAAATAATGTTT  150

seq1  AAGCCTAAATTATTTTGTAAAGCTCAGATTACATGTAGCTGGGGTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAATTATTTTGTAAAGCTCAGATTACATGTAGCTGGGGTAAAAA  200

seq1  TAGTCAGGAAACTGCCTGGGACACAAAGTTTAACACAGAAGATGTAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGAAACTGCCTGGGACACAAAGTTTAACACAGAAGATGTAAAAG  250

seq1  GAGAGTTGAGCGCTTGGTTTTCCTAATCTAAGAATGGTACATTTTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGAGCGCTTGGTTTTCCTAATCTAAGAATGGTACATTTTTCTGA  300

seq1  GACCCTGTGGCACGGTTTGGATAAAATAGAAGAGATAAAGAAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTGGCACGGTTTGGATAAAATAGAAGAGATAAAGAAAAAAAAAG  350

seq1  GCAGCAGTGGCTCCTTTCTTCTTCTTTACATGCTCCCAGCCACCAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGGCTCCTTTCTTCTTCTTTACATGCTCCCAGCCACCAAAGAG  400

seq1  TTAAGTGGGACATGGCAATCTTTATATAATGGTTAATCTTATAAATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGGACATGGCAATCTTTATATAATGGTTAATCTTATAAATGTAG  450

seq1  GGTTCGGGCACTCAGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGGCACTCAGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500

seq1  G  501
      |
seq2  G  501