BAC Information

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BAC

Clone NameB6Ng01-023K15
Chromosome1 (Build37)
Map Location 20,402,085 - 20,542,565
singlet/doubletdoublet
Overlap genePkhd1
Upstream genenone
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023K15.bB6Ng01-023K15.g
ACCDH855521DH855522
length9731,085
definitionDH855521|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K15, 5' end.DH855522|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,402,085 - 20,403,066)(20,541,461 - 20,542,565)
sequence
gaattcttgatctcccatccagcgttcctggtatttaacactgcaaattt
tgatgctcagtttccagaatgctagctgacctagggtcaaccatactaaa
gagaagccttggattcctcttagagtaagataaaaaggaatctagggaat
attttttatagacaatgattattacatagtttataacataacccagacag
agaaaataccatagtcttcagtacagccaccaactcatatctaaaacaac
ttttctattacaagtaagttccactttttcatgtcaatatgaaaatactg
atgttgatgaccttggcctcttaagatcagcccactaccctgggtctaca
aatgagggtggttcattctgtttggtttttgtttgggggtgctggaattg
gaggtcttacccatgttatacaagtaccaaaccactgatcctccccagtc
ctggagctcacacttttattctgtatttgactaaagccagacaaccaatg
tatataatcatctgctgaaacactcgattaattcttgcattttccagttt
ataacaacattttacacacttaataattgctttatattttaaaaaggtaa
aaaaaaaaaacaaaaaaaaaacaaaaaaaaaaaacctagttcaattggca
aagtagaattaggtgatcagaaaagcaagaaagcttcaagcagaaacact
ttgttgcctaaatcctgtttttctcttagaagccataaacacccaggccc
atctgtaaggggatcttaatacaactgttattgaactctgcccaggttta
attaagggaaaggaagagttaaataataaataataaattaataaataaca
aatggagtgtctttcttggttataatactaaactattaatggtgggaaat
tatgggatctcaaatatatcagtcagtttcgttgaatggagtattgatta
ctaatgccatcctcatggcttgc
gaattctgtcagccacactgaagctaccctgaagagtcaccttctctcta
gaatttcctaggccaaaacccatagcattcaggtccttcagagttaaacg
cagtggcactgcctttctactaatgagaattttagtggccactcaagttt
ggaagagattgaaacacatgatggtgtcttaagagctttgataatgtaca
ctcttcacaaggcatattgatagaaatgtgggtctttggaagggaagcta
agggacattcaggaaggctttatgtgtagctggtacatgtccccaaatcc
tatttcctgagaaaacatctccctgagtaggaggtacatggggtatcttt
actatgatgggacaacatatgaaaagcttgctttttagagtctgataaat
atatcagtgtccacagtattttttgtctctatggtatgaaccactagggt
atctatacttcttacaaataagcaactatctggagaagtatttttctggt
gttttgttactacctgccgaaccatggaggaaagccagccttagcccaat
gttttggaatgaggacagacccaaaattatgtgcaaatgtagagaaaccg
tttttaatggagggactgctgttggccttgtagaaacagagtggaatgtt
attaaccctttagggtagtgtggcattcaggaggaggctcttgagcaggt
gaaaagcagcctgaattttaatttaaacctgcctcactgacttggtgagc
ttttgaatatcactagggtttattttcttcatccctcagtatgcacgaag
gtgcccacatggcccacctcacagggctgttgggactggctaatgaaatg
gaaacttttggtaagtaccggagcacagagattgttattctctgtgggga
tgcagaacaggaaagcaggtggtgggctagaggcgcttctaatagagaag
caaagtgaagtgcaagcatgcctcagctgggtggctaagttatgtgtagc
tgctgcatgcctccctactttcgtgaaaatgccaggttttcctctgttca
cgaactagctaatttttcaaccaaggcagcgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20402085_20403066
seq2: B6Ng01-023K15.b_46_1018

seq1  GAATTC-TGATCTCCCATCCAGCGTTCCTGGTATTTAACACTGCAAATTT  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCTCCCATCCAGCGTTCCTGGTATTTAACACTGCAAATTT  50

seq1  TGATGCTCAGTTTCCAGAATGCTAGCTGACCTAGGGTCAACCATACTAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCAGTTTCCAGAATGCTAGCTGACCTAGGGTCAACCATACTAAA  100

seq1  GAGAAGCCTTGGATTCCTCTTAGAGTAAGATAAAAAGGAATCTAGGGAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCTTGGATTCCTCTTAGAGTAAGATAAAAAGGAATCTAGGGAAT  150

seq1  ATTTTTTATAGACAATGATTATTACATAGTTTATAACATAACCCAGACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATAGACAATGATTATTACATAGTTTATAACATAACCCAGACAG  200

seq1  AGAAAATACCATAGTCTTCAGTACAGCCACCAACTCATATCTAAAACAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACCATAGTCTTCAGTACAGCCACCAACTCATATCTAAAACAAC  250

seq1  TTTTCTATTACAAGTAAGTTCCACTTTTTCATGTCAATATGAAAATACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTACAAGTAAGTTCCACTTTTTCATGTCAATATGAAAATACTG  300

seq1  ATGTTGATGACCTTGGCCTCTTAAGATCAGCCCACTACCCTGGGTCTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATGACCTTGGCCTCTTAAGATCAGCCCACTACCCTGGGTCTACA  350

seq1  AATGAGGGTGGTTCATTCTGTTTGGTTTTTGTTTGGGGGTGCTGGAATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGTGGTTCATTCTGTTTGGTTTTTGTTTGGGGGTGCTGGAATTG  400

seq1  GAGGTCTTACCCATGTTATACAAGTACCAAACCACTGATCCTCCCCAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTACCCATGTTATACAAGTACCAAACCACTGATCCTCCCCAGTC  450

seq1  CTGGAGCTCACACTTTTATTCTGTATTTGACTAAAGCCAGACAACCAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTCACACTTTTATTCTGTATTTGACTAAAGCCAGACAACCAATG  500

seq1  TATATAATCATCTGCTGAAACACTCGATTAATTCTTGCATTTTCCAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATCATCTGCTGAAACACTCGATTAATTCTTGCATTTTCCAGTTT  550

seq1  ATAACAACATTTTACACACTTAATAATTGC-TTATATTTT-AAAAGGTAA  597
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  ATAACAACATTTTACACACTTAATAATTGCTTTATATTTTAAAAAGGTAA  600

seq1  AAAAAAAAAACAAAAAAAAAACAAAAAAAAAAAACC-AG-TCAATTGGCA  645
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  AAAAAAAAAACAAAAAAAAAACAAAAAAAAAAAACCTAGTTCAATTGGCA  650

seq1  AAGTAGAATTAGGTGATCAG-AAAGCAAGAAAGCTTCAAGCAGAAACACT  694
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGTAGAATTAGGTGATCAGAAAAGCAAGAAAGCTTCAAGCAGAAACACT  700

seq1  TTGTTGCCTAAATCCTGTTTTTCTCTTAGGAAGCCATAAACA-CCAGGCC  743
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  TTGTTGCCTAAATCCTGTTTTTCTCTTA-GAAGCCATAAACACCCAGGCC  749

seq1  CATCTGTAAGGGGATCTTAAGTACAACTGTAATTGAACTCTGCACAGGTT  793
      |||||||||||||||||||| ||||||||| |||||||||||| ||||||
seq2  CATCTGTAAGGGGATCTTAA-TACAACTGTTATTGAACTCTGCCCAGGTT  798

seq1  CTAATAAGGGAAAGGAAGAAGTTAAATAAATAAATAAATAAATAAATAAA  843
        | |||||||||||||| |||||||| ||||||| ||||||| ||||||
seq2  TAATTAAGGGAAAGGAAG-AGTTAAAT-AATAAAT-AATAAATTAATAAA  845

seq1  TAACAAAATGGAGTTGTCTTTACTTGGTTTATAATACTAAACTATTAATT  893
      |||| |||||||| ||||||| ||||| |||||||||||||||||||| |
seq2  TAAC-AAATGGAG-TGTCTTT-CTTGG-TTATAATACTAAACTATTAA-T  890

seq1  GTTGGGAAATATAGGTATCTTCTAAATAATTATCAGTCAGTTTTCGCTGA  943
      | ||||||||   || ||||   |||||  |||||||||| ||||| |||
seq2  GGTGGGAAATTATGGGATCT--CAAATA--TATCAGTCAG-TTTCGTTGA  935

seq1  GTGGAGTAATGATTACAAATGCCAATCTCTATGGCTTGC  982
       ||||||| ||||||| |||||||  ||| |||||||||
seq2  ATGGAGTATTGATTACTAATGCCATCCTC-ATGGCTTGC  973

seq1: chr1_20541461_20542565
seq2: B6Ng01-023K15.g_69_1153 (reverse)

seq1  TAAACGCTGGCTTTTGCTTGGAAAAATTTAGCTAGTTCTGTGAACAGA-G  49
      ||||||||| |  ||| |||  |||| ||||||||||| ||||||||| |
seq2  TAAACGCTGCC--TTGGTTG--AAAAATTAGCTAGTTC-GTGAACAGAGG  45

seq1  AAAACTTGGCCACTTTTCACAGAAAGTAGGGGAGGCATGCAGCAGCTGAC  99
      ||||| ||||   ||||||| ||||||| ||||||||||||||||||   
seq2  AAAACCTGGC--ATTTTCAC-GAAAGTA-GGGAGGCATGCAGCAGCT---  88

seq1  ACCCATAAACTTTAGCCACCCCAGCTGAGGAATGCTTGCACTTCACTTTG  149
      || |||||   ||||||| ||||||||||| |||||||||||||||||||
seq2  ACACATAA--CTTAGCCA-CCCAGCTGAGGCATGCTTGCACTTCACTTTG  135

seq1  CTTTCTCTATTAGAAGCGCCTCTAAGCCCAACCACCTGCTTTCCTGTTCT  199
      | ||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  C-TTCTCTATTAGAAGCGCCTCT-AGCCC-ACCACCTGCTTTCCTGTTCT  182

seq1  GCATCCCCACAGAGAAATAACAATCTCTGTGCTCCGGTACTTTACCAAAA  249
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GCATCCCCACAGAG-AATAACAATCTCTGTGCTCCGGTAC-TTACCAAAA  230

seq1  GTTTCCATTTCATTAGCCAGTCCCAACAGCCCTGTGAGGTGGGCCATGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATTTCATTAGCCAGTCCCAACAGCCCTGTGAGGTGGGCCATGTG  280

seq1  GGCACCTTCGTGCATACCTGAGGGATGAAGAAAATAAACCCTAGTGATAT  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCACCTTCGTGCATA-CTGAGGGATGAAGAAAATAAACCCTAGTGATAT  329

seq1  TCAAAAGCTCACCAAGTCAGTGAGGCAGGTTTAAATTAAAATTCAGGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTCACCAAGTCAGTGAGGCAGGTTTAAATTAAAATTCAGGCTG  379

seq1  CTTTTCACCTGCTCAAGAGCCTCCTCCTGAATGCCACACTACCCTAAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACCTGCTCAAGAGCCTCCTCCTGAATGCCACACTACCCTAAAGG  429

seq1  GTTAATAACATTCCACTCTGTTTCTACAAGGCCAACAGCAGTCCCTCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAACATTCCACTCTGTTTCTACAAGGCCAACAGCAGTCCCTCCAT  479

seq1  TAAAAACGGTTTCTCTACATTTGCACATAATTTTGGGTCTGTCCTCATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACGGTTTCTCTACATTTGCACATAATTTTGGGTCTGTCCTCATTC  529

seq1  CAAAACATTGGGCTAAGGCTGGCTTTCCTCCATGGTTCGGCAGGTAGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTGGGCTAAGGCTGGCTTTCCTCCATGGTTCGGCAGGTAGTAA  579

seq1  CAAAACACCAGAAAAATACTTCTCCAGATAGTTGCTTATTTGTAAGAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACCAGAAAAATACTTCTCCAGATAGTTGCTTATTTGTAAGAAGT  629

seq1  ATAGATACCCTAGTGGTTCATACCATAGAGACAAAAAATACTGTGGACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACCCTAGTGGTTCATACCATAGAGACAAAAAATACTGTGGACAC  679

seq1  TGATATATTTATCAGACTCTAAAAAGCAAGCTTTTCATATGTTGTCCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATTTATCAGACTCTAAAAAGCAAGCTTTTCATATGTTGTCCCAT  729

seq1  CATAGTAAAGATACCCCATGTACCTCCTACTCAGGGAGATGTTTTCTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAAGATACCCCATGTACCTCCTACTCAGGGAGATGTTTTCTCAG  779

seq1  GAAATAGGATTTGGGGACATGTACCAGCTACACATAAAGCCTTCCTGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGGATTTGGGGACATGTACCAGCTACACATAAAGCCTTCCTGAAT  829

seq1  GTCCCTTAGCTTCCCTTCCAAAGACCCACATTTCTATCAATATGCCTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTAGCTTCCCTTCCAAAGACCCACATTTCTATCAATATGCCTTGT  879

seq1  GAAGAGTGTACATTATCAAAGCTCTTAAGACACCATCATGTGTTTCAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGTACATTATCAAAGCTCTTAAGACACCATCATGTGTTTCAATC  929

seq1  TCTTCCAAACTTGAGTGGCCACTAAAATTCTCATTAGTAGAAAGGCAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAACTTGAGTGGCCACTAAAATTCTCATTAGTAGAAAGGCAGTG  979

seq1  CCACTGCGTTTAACTCTGAAGGACCTGAATGCTATGGGTTTTGGCCTAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCGTTTAACTCTGAAGGACCTGAATGCTATGGGTTTTGGCCTAGG  1029

seq1  AAATTCTAGAGAGAAGGTGACTCTTCAGGGTAGCTTCAGTGTGGCTGACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGAGAGAAGGTGACTCTTCAGGGTAGCTTCAGTGTGGCTGACA  1079

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1085