BAC Information

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BAC

Clone NameB6Ng01-023M02
Chromosome1 (Build37)6 (Build37)
Map Location 162,497,831 - 162,498,34312,019,016 - 12,019,480
singlet/doubletsingletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023M02.bB6Ng01-023M02.g
ACCDH855587DH855588
length732853
definitionDH855587|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M02, 5' end.DH855588|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(162,497,831 - 162,498,343)(12,019,016 - 12,019,480)
sequence
gaattctctgacttcatttgtttaaacacaaactaatgaggggtggcaga
ggagccggcttgggtaagaacacttatggctcatgcaggagaccaagagt
gtattcctggaacccacatggtggcatcagacccagtttgagggtattaa
gacaacctcttctgagttgtgcacatacatacatgccggcaaatactgat
gcacataaaataaaagaataaatcttttttataaacagaaatgaccatat
tcgatcttttacttacattttaatactgttatagacaaaacttccaaatc
atggactgtaaggaggctcttttcttaacgttcctccaccagtctacctg
agttgccaggactacagtcatgcatcccgacacccagctttctaatcttt
tctctttttaagaaaatgcatctgccttgtctggcctcaatgggaaggga
agtgcctaatcctgtagacttgatgccccagggaatggggatgtgattgg
tgggaggggtgggaattctgttttaaggaaccattgggtggcatttcatt
cctcggccagggcaatgggatggtgatggctgttggcaaaggtctcagtt
ctttgccaggtgactctctccttacaactcaatgagtgttctcatgggca
aggcactagatttcttccaagtgtgcattctgagacagaacaaattaaac
tctcaatattgtcttatgtctagcttcaaaca
gaattcaaggctggactggtctacagaaataattccaggacaacaaggga
tacacagagacactctgttttgaaaaacaacaaaaacaaagaaacaaagc
aacaaagcaacaaaaaagattaatgatacatactcaggttaatgtttgtt
gtgaaggtagaaaggcatttcagctcttaaagagaagtgccttctggtgc
tgctgttaatgaacattcacttggtgatttagaatgttgcagaaatgtta
gaggaagcataaaattccttactttgtgactttaattttttatattttat
atatttcccttcaacagtgtttcataaatataatttaaatatcactgtgg
gaagtttttcttttaattatttcatggtaactatgtcagcactaattttc
tagcaatattagaacacattattcaaacatttgagaacctagttgtatgc
caaacactatgtgatatattggggttttagatttgtgtgaaatatagttg
ttttttctttttttggacattttctttatttacatttcaaatgttatccc
ttttcctggtcctccctcccgaaacctcctattcccccaacccccctgct
tctatgagggttctcccccactcactcacccattcccacatccctaccct
ggcattcccctacactgggacatcgagccttcacaggaccaagggcctct
cctcacattgatgcccaacaaggccatcctctgctacatatgtggctgga
gtcatgggtctctccatgtgtactctttgggtggtggttaagttcttggg
aactctggaggatctgtttggctgatattgttgttcttctatggaattgc
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162497831_162498343
seq2: B6Ng01-023M02.b_46_558

seq1  GAATTCTCTGACTTCATTTGTTTAAACACAAACTAATGAGGGGTGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACTTCATTTGTTTAAACACAAACTAATGAGGGGTGGCAGA  50

seq1  GGAGCCGGCTTGGGTAAGAACACTTATGGCTCATGCAGGAGACCAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGGCTTGGGTAAGAACACTTATGGCTCATGCAGGAGACCAAGAGT  100

seq1  GTATTCCTGGAACCCACATGGTGGCATCAGACCCAGTTTGAGGGTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTGGAACCCACATGGTGGCATCAGACCCAGTTTGAGGGTATTAA  150

seq1  GACAACCTCTTCTGAGTTGTGCACATACATACATGCCGGCAAATACTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTCTTCTGAGTTGTGCACATACATACATGCCGGCAAATACTGAT  200

seq1  GCACATAAAATAAAAGAATAAATCTTTTTTATAAACAGAAATGACCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAAAATAAAAGAATAAATCTTTTTTATAAACAGAAATGACCATAT  250

seq1  TCGATCTTTTACTTACATTTTAATACTGTTATAGACAAAACTTCCAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCTTTTACTTACATTTTAATACTGTTATAGACAAAACTTCCAAATC  300

seq1  ATGGACTGTAAGGAGGCTCTTTTCTTAACGTTCCTCCACCAGTCTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGTAAGGAGGCTCTTTTCTTAACGTTCCTCCACCAGTCTACCTG  350

seq1  AGTTGCCAGGACTACAGTCATGCATCCCGACACCCAGCTTTCTAATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAGGACTACAGTCATGCATCCCGACACCCAGCTTTCTAATCTTT  400

seq1  TCTCTTTTTAAGAAAATGCATCTGCCTTGTCTGGCCTCAATGGGAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTAAGAAAATGCATCTGCCTTGTCTGGCCTCAATGGGAAGGGA  450

seq1  AGTGCCTAATCCTGTAGACTTGATGCCCCAGGGAATGGGGATGTGATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTAATCCTGTAGACTTGATGCCCCAGGGAATGGGGATGTGATTGG  500

seq1  TGGGAGGGGTGGG  513
      |||||||||||||
seq2  TGGGAGGGGTGGG  513

seq1: chr6_12019016_12019480
seq2: B6Ng01-023M02.g_160_610

seq1  AAACAAAGCAAACAAAGC--CAAACAATACAAATG--------------T  34
      ||||||||| ||||||||  |||| || |  ||||              |
seq2  AAACAAAGC-AACAAAGCAACAAAAAAGATTAATGATACATACTCAGGTT  49

seq1  GTTGTCTGTCTCTG-ATATATAAATACA--TAAATATTTAAATA------  75
        ||| ||| | || |  || |||  ||  | |    ||||| |      
seq2  AATGTTTGT-TGTGAAGGTAGAAAGGCATTTCAGCTCTTAAAGAGAAGTG  98

seq1  -TTTCACAAGTTCCTAT--ATGA--ATACA------TATTTA-TATGT--  111
        |||    | | || |  ||||  || ||       |||||  ||||  
seq2  CCTTCTGGTGCTGCTGTTAATGAACATTCACTTGGTGATTTAGAATGTTG  148

seq1  ---AAA---TAGA-TATGCATATGTGTATAT---ATACTTTAT-ATATAA  150
         |||   ||||  | |||||     | ||    |||||| | |  | |
seq2  CAGAAATGTTAGAGGAAGCATA-----AAATTCCTTACTTTGTGACTTTA  193

seq1  ATACATAAATATATTTTACAACCTTATATGTTTCTTAATTATAGCATTGC  200
      ||   |   |||||||||      ||||| |  |||      | || || 
seq2  AT---TTTTTATATTTTA------TATATTTCCCTT-----CAACAGTGT  229

seq1  ATCAAAAATGGACATTAATTCGGTTATATATGA-TGTCTTTTTTTTTTTT  249
       ||| ||||      ||||    ||| |||| | |||      ||||| |
seq2  TTCATAAAT-----ATAAT----TTAAATATCACTGTGGGAAGTTTTTCT  270

seq1  TTTAAGACTCTTAAGGGTGAACTTT--------TACTTTTC--CCAAAAT  289
      |||||   | || | ||| |||| |        || |||||   ||| ||
seq2  TTTAATTAT-TTCATGGT-AACTATGTCAGCACTAATTTTCTAGCAATAT  318

seq1  CCTGTATGGACCTACCTCTGTAGACTCATGAGTCTTCTTAAAATAGTAAC  339
            | || |    | |  | ||   ||||       ||  ||||   
seq2  ------TAGAACACATTATTCAAACATTTGAG-------AACCTAGT---  352

seq1  TGTGCTTCCGTCTTTAGAAAAGAAGCATTTG-TTTGTT--GCTTTCAAAC  386
      |||  | ||          ||  |  || || | | ||  | ||| | | 
seq2  TGT-ATGCC----------AAACACTATGTGATATATTGGGGTTTTAGAT  391

seq1  ATTTGAGAACTCCATAGCCCTGATCATCCTTTTTTTTTCTTTTTTTTTAT  436
       | || ||| |  ||||            || ||||||||||||     |
seq2  TTGTGTGAAAT--ATAG------------TTGTTTTTTCTTTTT-----T  422

seq1  TCGATATTTTCTTTATTTACATTTCAAAT  465
      | || ||||||||||||||||||||||||
seq2  TGGACATTTTCTTTATTTACATTTCAAAT  451