BAC Information

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BAC

Clone NameB6Ng01-024D21
Chromosome1 (Build37)
Map Location 52,379,891 - 52,520,148
singlet/doubletdoublet
Overlap geneNab1
Upstream geneLOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
Downstream geneLOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024D21.bB6Ng01-024D21.g
ACCDH855939DH855940
length6591,100
definitionDH855939|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D21, 5' end.DH855940|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,379,891 - 52,380,549)(52,519,036 - 52,520,148)
sequence
gaattcttgttactctgaatgagctacaaatgaacatttttggaataagg
ctattgtgattttgagactggatcttttattagttattcttaactcagtg
gtgtgaactgtataatcttttaattgtaacccaccaatagagcgctatac
ttttcgaatgaaacatattataaacaattgaaatatataattaattagca
attaagaagaaaggcttctagacaacacaactctgtcgtatagaggaagg
cagatacattctgagttactaattaagtcttctgataaagttctatctta
gggatacaaaagaaccagaacccaggcaagaatacagacatcttcttgac
actgggaaaaatttggcttgaaatactcctaattctgtggatacagtctt
taaagatggttttctgttttgtttgtgtgtgtgtgtgttttattttaaaa
tttaatttatgcatatgggcgttttgtctgtgtgtatttctgtgcagtgc
ccacagagaccagaaaggggaattaggtcccatggagctaggtcaccatg
agggtcctaagaattgaacctgggtcctctggaagagcaaccagtactgt
taactgttgaaccacatctctgttctttcttttccttccttccttccttc
cttccttcc
gaattcttgccctgtgtcctctctggcacttgcaggctcaatgatagcca
ctccgactagagcgatgtggaaatttaattttaatttgcatttgcatgat
agctgagatgttgagccatttcccagatattcaggaagtgtgtatgtgtg
tatatttcttctttgccatttgtgtatatttctaccttggcatttcatta
gttcagttattaatggaaggtgagaggagaggtttttgtgactgatttct
gcactcctttatatgtcatggatgctaatcctgtctgacatgtattggca
aagatttttttttccaattcaaataagaatacctcgttagtaagcattct
ctagccatgaaatgaaatgtcaccttcgatcacaacaccagagtaaaaca
aagatttcctttctaacacttgacagaaacgttgtagctgaggtcttctt
tagcttctctgacccttcttagtggctaagaattaacatataagaaaaga
caattatgaacaacttgatggtgattaatttatgacactaggataacttg
ctgtgcgatagtaattttctgtgacagataatataatatgatgtgtaaca
cattttacagtatttgtactaattattttttcatggattatgtttttttt
aaaaaaataactataattggcctaaagcattctctgcctatctactatta
aatgtgtggtgagttgatagcatgccctagtatatgattattaagaaaat
gtcttacagaggagctgtataactcgggcattagaaggcttctagaaatg
tccatctcttgttctgttcatcttagttcttaagtatccctcaacagttt
gtaatatgccaggtactaacattaatggcatgccattttcctcctaagtt
attattttaaatgcatttcctggctgtataatgccgcagagcttcttatt
tcttctcattctcagtaagggtgtacttgccacttgtggatggtttatct
ataaatcaaactaaacccaacaacaaaaatccagggaccgttaaagtgtc
tctggttctttcttttcctccttcctcctttcctctagagaaagaccttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52379891_52380549
seq2: B6Ng01-024D21.b_39_697

seq1  GAATTCTTGTTACTCTGAATGAGCTACAAATGAACATTTTTGGAATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTACTCTGAATGAGCTACAAATGAACATTTTTGGAATAAGG  50

seq1  CTATTGTGATTTTGAGACTGGATCTTTTATTAGTTATTCTTAACTCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGATTTTGAGACTGGATCTTTTATTAGTTATTCTTAACTCAGTG  100

seq1  GTGTGAACTGTATAATCTTTTAATTGTAACCCACCAATAGAGCGCTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAACTGTATAATCTTTTAATTGTAACCCACCAATAGAGCGCTATAC  150

seq1  TTTTCGAATGAAACATATTATAAACAATTGAAATATATAATTAATTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAATGAAACATATTATAAACAATTGAAATATATAATTAATTAGCA  200

seq1  ATTAAGAAGAAAGGCTTCTAGACAACACAACTCTGTCGTATAGAGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAGAAAGGCTTCTAGACAACACAACTCTGTCGTATAGAGGAAGG  250

seq1  CAGATACATTCTGAGTTACTAATTAAGTCTTCTGATAAAGTTCTATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACATTCTGAGTTACTAATTAAGTCTTCTGATAAAGTTCTATCTTA  300

seq1  GGGATACAAAAGAACCAGAACCCAGGCAAGAATACAGACATCTTCTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACAAAAGAACCAGAACCCAGGCAAGAATACAGACATCTTCTTGAC  350

seq1  ACTGGGAAAAATTTGGCTTGAAATACTCCTAATTCTGTGGATACAGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAAAATTTGGCTTGAAATACTCCTAATTCTGTGGATACAGTCTT  400

seq1  TAAAGATGGTTTTCTGTTTTGTTTGTGTGTGTGTGTGTTTTATTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGTTTTCTGTTTTGTTTGTGTGTGTGTGTGTTTTATTTTAAAA  450

seq1  TTTAATTTATGCATATGGGCGTTTTGTCTGTGTGTATTTCTGTGCAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATGCATATGGGCGTTTTGTCTGTGTGTATTTCTGTGCAGTGC  500

seq1  CCACAGAGACCAGAAAGGGGAATTAGGTCCCATGGAGCTAGGTCACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGACCAGAAAGGGGAATTAGGTCCCATGGAGCTAGGTCACCATG  550

seq1  AGGGTCCTAAGAATTGAACCTGGGTCCTCTGGAAGAGCAACCAGTACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTAAGAATTGAACCTGGGTCCTCTGGAAGAGCAACCAGTACTGT  600

seq1  TAACTGTTGAACCACATCTCTGTTCTTTCTTTTCCTTCCTTCCTTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTGAACCACATCTCTGTTCTTTCTTTTCCTTCCTTCCTTCCTTC  650

seq1  CTTCCTTCC  659
      |||||||||
seq2  CTTCCTTCC  659

seq1: chr1_52519036_52520148
seq2: B6Ng01-024D21.g_67_1166 (reverse)

seq1  AAAGGTCTTTCTCCTAAGGAAATGGAAGAAAGAAAGAAAAAGAAAAAGAA  50
      |||||||||||||   |||||| ||| ||| |  || ||||||||    |
seq2  AAAGGTCTTTCTCTAGAGGAAA-GGAGGAAGG--AGGAAAAGAAA---GA  44

seq1  AACAAAGTAACATTTTAAACAGTCCCTGTGATTTTTGTTGTTTGGTTTCT  100
      | || ||  ||| ||| ||| ||||||| ||||||||||||| |||||  
seq2  ACCAGAG--ACACTTT-AACGGTCCCTG-GATTTTTGTTGTTGGGTTT-A  89

seq1  GTTTGATTTTATAGATAAA-CATTCACAAGTTGCCAGTACACACCTTACT  149
      |||||| |||||||||||| ||| ||||||| || ||||||| |||||||
seq2  GTTTGA-TTTATAGATAAACCATCCACAAGTGGCAAGTACAC-CCTTACT  137

seq1  GAGAATGAGAAGAATTAAGAAGCTCTGCGGCATTTATAATAGCCAGGAAA  199
      |||||||||||||| ||||||||||||||||| |||| | ||||||||||
seq2  GAGAATGAGAAGAAATAAGAAGCTCTGCGGCA-TTAT-ACAGCCAGGAAA  185

seq1  TGACATTTAAAATAATAACTTAGGAGGAAAATGGCATGCCATTAATGTTA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-CATTTAAAATAATAACTTAGGAGGAAAATGGCATGCCATTAATGTTA  234

seq1  GTACCTGGCATA-TACAAACTGTTGAGGGATACTTAAGAACTAAGATGAA  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGCATATTACAAACTGTTGAGGGATACTTAAGAACTAAGATGAA  284

seq1  CAGAACAAGAGATGGACATTTCTAGAAGCCTTCTAATG-CCGAGTTATAC  347
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGAACAAGAGATGGACATTTCTAGAAGCCTTCTAATGCCCGAGTTATAC  334

seq1  AGCTCCTCTGTAAGACATTTTCTTAATAATCATATACTAGGGCATGCTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCTGTAAGACATTTTCTTAATAATCATATACTAGGGCATGCTAT  384

seq1  CAACTCACCACACATTTAATAGTAGATAGGCAGAGAATGCTTTAGGCCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCACCACACATTTAATAGTAGATAGGCAGAGAATGCTTTAGGCCAA  434

seq1  TTATAGTTATTTTTTTAAAAAAAACATAATCCATGAAAAAATAATTAGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTATTTTTTTAAAAAAAACATAATCCATGAAAAAATAATTAGTA  484

seq1  CAAATACTGTAAAATGTGTTACACATCATATTATATTATCTGTCACAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTGTAAAATGTGTTACACATCATATTATATTATCTGTCACAGAA  534

seq1  AATTACTATCGCACAGCAAGTTATCCTAGTGTCATAAATTAATCACCATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATCGCACAGCAAGTTATCCTAGTGTCATAAATTAATCACCATC  584

seq1  AAGTTGTTCATAATTGTCTTTTCTTATATGTTAATTCTTAGCCACTAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTCATAATTGTCTTTTCTTATATGTTAATTCTTAGCCACTAAGA  634

seq1  AGGGTCAGAGAAGCTAAAGAAGACCTCAGCTACAACGTTTCTGTCAAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAGAGAAGCTAAAGAAGACCTCAGCTACAACGTTTCTGTCAAGTG  684

seq1  TTAGAAAGGAAATCTTTGTTTTACTCTGGTGTTGTGATCGAAGGTGACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGGAAATCTTTGTTTTACTCTGGTGTTGTGATCGAAGGTGACAT  734

seq1  TTCATTTCATGGCTAGAGAATGCTTACTAACGAGGTATTCTTATTTGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCATGGCTAGAGAATGCTTACTAACGAGGTATTCTTATTTGAAT  784

seq1  TGGAAAAAAAAATCTTTGCCAATACATGTCAGACAGGATTAGCATCCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAAAATCTTTGCCAATACATGTCAGACAGGATTAGCATCCATG  834

seq1  ACATATAAAGGAGTGCAGAAATCAGTCACAAAAACCTCTCCTCTCACCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAAGGAGTGCAGAAATCAGTCACAAAAACCTCTCCTCTCACCTT  884

seq1  CCATTAATAACTGAACTAATGAAATGCCAAGGTAGAAATATACACAAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATAACTGAACTAATGAAATGCCAAGGTAGAAATATACACAAATG  934

seq1  GCAAAGAAGAAATATACACACATACACACTTCCTGAATATCTGGGAAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAGAAATATACACACATACACACTTCCTGAATATCTGGGAAATG  984

seq1  GCTCAACATCTCAGCTATCATGCAAATGCAAATTAAAATTAAATTTCCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACATCTCAGCTATCATGCAAATGCAAATTAAAATTAAATTTCCAC  1034

seq1  ATCGCTCTAGTCGGAGTGGCTATCATTGAGCCTGCAAGTGCCAGAGAGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTCTAGTCGGAGTGGCTATCATTGAGCCTGCAAGTGCCAGAGAGGA  1084

seq1  CACAGGGCAAGAATTC  1113
      ||||||||||||||||
seq2  CACAGGGCAAGAATTC  1100