BAC Information

Click to search

BAC

Clone NameB6Ng01-024G10
Chromosome1 (Build37)
Map Location 169,557,296 - 169,666,506
singlet/doubletdoublet
Overlap geneRxrg, Lmx1a
Upstream geneEG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52
Downstream geneLOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024G10.bB6Ng01-024G10.g
ACCDH856047DH856048
length479802
definitionDH856047|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G10, 5' end.DH856048|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,666,022 - 169,666,506)(169,557,296 - 169,558,099)
sequence
tataaaactattagtccgagtctgatattgataaatagatactgtcatat
tcacaacttattaagggaagtttgtctttggctcacatatgaatgctact
ctttctatacaggtgtttagtcttgatttgtcaactgtttcacctataac
ctgcagatttcagtatctttgtaacagatctgagttttctggtaggcagc
ctcactcatctaggtcagatgatccaggcacctcatacacagctccagga
aaatcccactcatagaagcctagctcccagatagaaggacagacatgtac
tgtgaattaacacaaacctcactcaaaattctgtgtttgaactggctctt
agagtttgggtgtcaatgaagacagtctctgaagagcaacgtgtgtgaag
accactgaccctgcttacaaatataccttctcctctctccgtggttccac
aaaggttggctggcagatgcacttgctca
gaattccttatttgttcttaggggctatgaccagttccttagggggtgtg
tggtcatgggcttctttgcggtgtaaaaattctgaataaatacaggagca
gtctatgggttgttctctcgtaaccagggaagcactacggtgtgtacagc
tgtgaaggttgcaaaggcttcttcaaaaggaccatcaggaaagatctcat
ctacacctgtcgggataacaaagattgtctcatcgacaagcgccagcgca
accgctgccagtactgtcgctaccagaagtgcctggtcatgggcatgaag
cgggaaggtgaggtatcccgcggctctcctctactcaaggggagtaggct
gcgcgggaagagctacgaagcgaagcgcaatgaagagccaggctgcacgc
gactctatgggagggagaaggttgatgtggaaggtcagatgagtcttagg
caccacaacttctcaaggcttccctccagagctcagagggcaagaggcat
ctcttctttccttatctctcttttctgggagcccaaggacaggcactcac
gtaggacacccttcattttttttctttcagtaagtgggcagcgggtctcg
gtggtctagtggttttgttctgtgccatacctagggcgcatcagactgac
cttcaaagtggagctggcttcttgctctatcttaggtttctttggaggga
aaacttcatatttgttttgccctctgggattagaaccctgtcccgctata
aaatcctcccatgttggtacattcctcagcctctgtggattattggcatc
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169666022_169666506
seq2: B6Ng01-024G10.b_34_518 (reverse)

seq1  TGCGCAAGTGCCTCTGCCAGCCAGCCTTTGTGGAACCACGGAGAGAGGAG  50
      || |||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TGAGCAAGTGCATCTGCCAGCCAACCTTTGTGGAACCACGGAGAGAGGAG  50

seq1  AAGGTATATTTGTAAGCAGGGTCAGTGGTCTTCACACACGTTGCTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATATTTGTAAGCAGGGTCAGTGGTCTTCACACACGTTGCTCTTCA  100

seq1  GAGACTGTCTTCATTGACACCCAAACTCTAAGAGCCAGTTCAAACACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTCTTCATTGACACCCAAACTCTAAGAGCCAGTTCAAACACAGA  150

seq1  ATTTTGAGTGAGGTTTGTGTTAATTCACAGTACATGTCTGTCCTTCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGTGAGGTTTGTGTTAATTCACAGTACATGTCTGTCCTTCTATC  200

seq1  TGGGAGCTAGGCTTCTATGAGTGGGATTTTCCTGGAGCTGTGTATGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTAGGCTTCTATGAGTGGGATTTTCCTGGAGCTGTGTATGAGGT  250

seq1  GCCTGGATCATCTGACCTAGATGAGTGAGGCTGCCTACCTGAAAACTCAG  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCTGGATCATCTGACCTAGATGAGTGAGGCTGCCTACCAGAAAACTCAG  300

seq1  ATCTGTTACAAAGATACTGAAATCTGCAGGTTATAGGTGAATCAGTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCTGTTACAAAGATACTGAAATCTGCAGGTTATAGGTGAAACAGTTGAC  350

seq1  ATATCAAGACTAAACACCTGTATAGAAAGAGTAGCATTCATATGTGAGCC  400
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGACTAAACACCTGTATAGAAAGAGTAGCATTCATATGTGAGCC  400

seq1  AAAGACCAACTTCCCTTACTAAGTTGTGAATATGACAGTATCTATTTATC  450
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGACAAACTTCCCTTAATAAGTTGTGAATATGACAGTATCTATTTATC  450

seq1  AATATCAGACTCGGACTAATAGTTTTCTAGAATTC  485
      |||||||||||||||||||||||||| ||||||||
seq2  AATATCAGACTCGGACTAATAGTTTTATAGAATTC  485

seq1: chr1_169557296_169558099
seq2: B6Ng01-024G10.g_69_870

seq1  GAATTCCTTATTTGTTCTTAGGGGCTATGACCAGTTCCTTAGGGGGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTGTTCTTAGGGGCTATGACCAGTTCCTTAGGGGGTGTG  50

seq1  TGGTCATGGGCTTCTTTGCGGTGTAAAAATTCTGAATAAATACAGGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGGGCTTCTTTGCGGTGTAAAAATTCTGAATAAATACAGGAGCA  100

seq1  GTCTATGGGTTGTTCTCTCGTAACCAGGGAAGCACTACGGTGTGTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGGGTTGTTCTCTCGTAACCAGGGAAGCACTACGGTGTGTACAGC  150

seq1  TGTGAAGGTTGCAAAGGCTTCTTCAAAAGGACCATCAGGAAAGATCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGTTGCAAAGGCTTCTTCAAAAGGACCATCAGGAAAGATCTCAT  200

seq1  CTACACCTGTCGGGATAACAAAGATTGTCTCATCGACAAGCGCCAGCGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTGTCGGGATAACAAAGATTGTCTCATCGACAAGCGCCAGCGCA  250

seq1  ACCGCTGCCAGTACTGTCGCTACCAGAAGTGCCTGGTCATGGGCATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGCCAGTACTGTCGCTACCAGAAGTGCCTGGTCATGGGCATGAAG  300

seq1  CGGGAAGGTGAGGTATCCCGCGGCTCTCCTCTACTCAAGGGGAGTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGGTGAGGTATCCCGCGGCTCTCCTCTACTCAAGGGGAGTAGGCT  350

seq1  GCGCGGGAAGAGCTACGAAGCGAAGCGCAATGAAGAGCCAGGCTGCACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGGAAGAGCTACGAAGCGAAGCGCAATGAAGAGCCAGGCTGCACGC  400

seq1  GACTCTATGGGAGGGAGAAGGTTGATGTGGAAGGTCAGATGAGTCTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTATGGGAGGGAGAAGGTTGATGTGGAAGGTCAGATGAGTCTTAGG  450

seq1  CACCACAACTTCTCAAGGCTTCCCTCCAGAGCTCAGAGGGCAAGAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAACTTCTCAAGGCTTCCCTCCAGAGCTCAGAGGGCAAGAGGCAT  500

seq1  CTCTTCTTTCCTTATCTCTCTTTTCTGGGAGCCCAAGGACAGGCACTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTCCTTATCTCTCTTTTCTGGGAGCCCAAGGACAGGCACTCAC  550

seq1  GTAGGACACCCTTCATTTTTTTTCTTTCAGTAAGTGGGCAGCGGGTCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACACCCTTCATTTTTTTTCTTTCAGTAAGTGGGCAGCGGGTCTCG  600

seq1  GTGGTCTAGTGGTTTTGTTCTGTGCCATACCTAGGGCGCATCAGACTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTAGTGGTTTTGTTCTGTGCCATACCTAGGGCGCATCAGACTGAC  650

seq1  CTTCAAAGTGGAGCTGGCTTCTTGCTCTAATCTTAGGTTTCTTTGGAGGG  700
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCAAAGTGGAGCTGGCTTCTTGCTCT-ATCTTAGGTTTCTTTGGAGGG  699

seq1  AAAACTTCAGATTTGTTATTGCCCTCTGGGATTTAGAACCCTGGCCCGCT  750
      ||||||||| ||||||| ||||||||||||| ||||||||||| ||||||
seq2  AAAACTTCATATTTGTT-TTGCCCTCTGGGA-TTAGAACCCTGTCCCGCT  747

seq1  AT-AAATCCTCCCATGTTGGTACATTCCTCAGTCTCTGTGGATTATTGGC  799
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAAAATCCTCCCATGTTGGTACATTCCTCAGCCTCTGTGGATTATTGGC  797

seq1  ATCTA  804
      |||||
seq2  ATCTA  802