BAC Information

Click to search

BAC

Clone NameB6Ng01-024J04
Chromosome1 (Build37)
Map Location 78,376,523 - 78,475,998
singlet/doubletdoublet
Overlap geneSgpp2, Farsb
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210, LOC100039382
Downstream geneMogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024J04.bB6Ng01-024J04.g
ACCDH856164DH856165
length916369
definitionDH856164|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J04, 5' end.DH856165|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,376,523 - 78,377,442)(78,475,624 - 78,475,998)
sequence
gaattcatttggcttctaaacttcaaatagcaagtaatatgaaattttgg
attatgaaaccctttcttactatgtgtacgactggccagacagctgcctg
tttaattacaagagttttaatagaaaaaaaaaaagatcttttaaatctat
tgagaatcagatttcagaaaacaaaaagttggcttactttcactaattca
ttcatattctgggcttgttgtagggattgagagataaaatatccatatac
tagccacagtcacataatgatgagttacctataggtaattgtgtgattgt
aataatactgttgtgatttctaactgcttagtctgcaagatggttttatt
ttgttttattaatttaaatatatacattgtagattaatcatatttctcaa
atataattaacagggggttggggaaatagcataggtaaagtgcttgctca
atgagtatgaagatctgagcttgtattctcagcgtccatataaaagccaa
gcatgggggtacgtataggtaaccccaacatggagggtagagataggtag
atcccggggacatgctggcctccagcttcagatttagtgagatactgtct
cagaaaagactgagatacaaaaagacacaggacattgatctctggcctct
acagcttatgtataggctgcgcaaacatgtacatgtgtgagcaaacacgt
atacatcacacatacacgtatacattagacacatacacacatcacacaca
tctataagacaaatgttttcaggaatgttttattaaatgttccaccaact
taaagcataatgttaggcttatagcatgacttacatgaggggaagagtct
gggaggaaggtttcactttgagaaatcttgaggacattgaacttggagtc
atgagtaaaacctctt
attatttttgtttttatttacttacacgttatctggtcagttgcaaaaga
gtatattcgtttgcttgctaggctcggttctgaaactatgacatctttga
gtgaatgtagatatttgaaatgatggttgggtttgagtttggggtttgtt
cagttgctttcatacttgaaaattaaatcaactggattttaaggccacca
gtcaggatttttacttttgcttattttttttttttcaattaatggatata
ggtgtttgtgtttggaaaaatgggggccattttatgtatccctggctggc
ttagaatttagtatgtattccaagttggccttggacttcaggtagtcctt
ttttccctgccttccaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78376523_78377442
seq2: B6Ng01-024J04.b_46_961

seq1  GAATTCATTTGGCTTCTAAACTTCAAATAGCAAGTAATATGAAATTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGCTTCTAAACTTCAAATAGCAAGTAATATGAAATTTTGG  50

seq1  ATTATGAAACCCTTTCTTACTATGTGTACGACTGGCCAGACAGCTGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAACCCTTTCTTACTATGTGTACGACTGGCCAGACAGCTGCCTG  100

seq1  TTTAATTACAAGAGTTTTAATAGAAAAAAAAAAAGATCTTTTAAATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACAAGAGTTTTAATAGAAAAAAAAAAAGATCTTTTAAATCTAT  150

seq1  TGAGAATCAGATTTCAGAAAACAAAAAGTTGGCTTACTTTCACTAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCAGATTTCAGAAAACAAAAAGTTGGCTTACTTTCACTAATTCA  200

seq1  TTCATATTCTGGGCTTGTTGTAGGGATTGAGAGATAAAATATCCATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCTGGGCTTGTTGTAGGGATTGAGAGATAAAATATCCATATAC  250

seq1  TAGCCACAGTCACATAATGATGAGTTACCTATAGGTAATTGTGTGATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACAGTCACATAATGATGAGTTACCTATAGGTAATTGTGTGATTGT  300

seq1  AATAATACTGTTGTGATTTCTAACTGCTTAGTCTGCAAGATGGTTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACTGTTGTGATTTCTAACTGCTTAGTCTGCAAGATGGTTTTATT  350

seq1  TTGTTTTATTAATTTAAATATATACATTGTAGATTAATCATATTTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTAATTTAAATATATACATTGTAGATTAATCATATTTCTCAA  400

seq1  ATATAATTAACAGGGGGTTGGGGAAATAGCATAGGTAAAGTGCTTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTAACAGGGGGTTGGGGAAATAGCATAGGTAAAGTGCTTGCTCA  450

seq1  ATGAGTATGAAGATCTGAGCTTGTATTCTCAGCGTCCATATAAAAGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATGAAGATCTGAGCTTGTATTCTCAGCGTCCATATAAAAGCCAA  500

seq1  GCATGGGGGTACGTATAGGTAACCCCAACATGGAGGGTAGAGATAGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGGTACGTATAGGTAACCCCAACATGGAGGGTAGAGATAGGTAG  550

seq1  ATCCCGGGGACATGCTGGCCTCCAGCTTCAGATTTAGTGAGATACTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGGGGACATGCTGGCCTCCAGCTTCAGATTTAGTGAGATACTGTCT  600

seq1  CAGAAAAGACTGAGATACAAAAAGACACAGGACATTGATCTCTGGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGACTGAGATACAAAAAGACACAGGACATTGATCTCTGGCCTCT  650

seq1  ACAGCTTATGTATAGGCTGCGCAAACATGTACATGTGTGAGCAAACACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTATGTATAGGCTGCGCAAACATGTACATGTGTGAGCAAACACGT  700

seq1  ATACATCACACATACACGTATACATTAGACACATACACACATCACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCACACATACACGTATACATTAGACACATACACACATCACACACA  750

seq1  TCTATAAGAC-AATGTTTTCAGGAATGTTTTATTAAATGTTCCACCAACT  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGACAAATGTTTTCAGGAATGTTTTATTAAATGTTCCACCAACT  800

seq1  TAAAGCATAATGTTAAGGCTTATTAGCATGACTTACATGAGGGGAAGAGT  849
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TAAAGCATAATGTT-AGGCTTA-TAGCATGACTTACATGAGGGGAAGAGT  848

seq1  CTGGGAGGAAGGTTTGCACTTTGAGAAACACTTGAGGACAGTGAACTTGG  899
      ||||||||||||||| ||||||||||||  |||||||||| |||||||||
seq2  CTGGGAGGAAGGTTT-CACTTTGAGAAA-TCTTGAGGACATTGAACTTGG  896

seq1  AGCTCATGAGTAAAACCTCTT  920
      || ||||||||||||||||||
seq2  AG-TCATGAGTAAAACCTCTT  916

seq1: chr1_78475624_78475998
seq2: B6Ng01-024J04.g_68_442 (reverse)

seq1  ACCTGGAAGGCAGGGAAAAAAGGACTACCTGAAGTCCAAGGCCAACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAGGCAGGGAAAAAAGGACTACCTGAAGTCCAAGGCCAACTTGG  50

seq1  TATACATACTAAATTCTAAGCCAGCCAGGGATACATAAAATGGCCCCCAT  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATACTAAATTCTAAGCCAGCCAGGGATACATAAAATGGCCCCCAT  100

seq1  TTTTCCAAACACAAACACCTATATCCATTAATTGAAAAAAAAAAAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAACACAAACACCTATATCCATTAATTGAAAAAAAAAAAATAAG  150

seq1  CAAAAGTAAAAATCCTGACTGGTGGCCTTAAAATCCAGTTGATTTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAAAAATCCTGACTGGTGGCCTTAAAATCCAGTTGATTTAATTT  200

seq1  TCAAGTATGAAAGCAACTGAACAAACCCCAAACTCAAACCCAACCATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATGAAAGCAACTGAACAAACCCCAAACTCAAACCCAACCATCAT  250

seq1  TTCAAATATCTACATTCACTCAAAGATGTCATAGTTTCAGAACCGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATCTACATTCACTCAAAGATGTCATAGTTTCAGAACCGAGCCT  300

seq1  AGCAAGCAAACGAATATACTCTTTTGCAACTGACCAGATAACGTGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAAACGAATATACTCTTTTGCAACTGACCAGATAACGTGTAAGT  350

seq1  AAATAAAAACAAAAATAATGAATTC  375
      |||||||||||||||||||||||||
seq2  AAATAAAAACAAAAATAATGAATTC  375