BAC Information

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BAC

Clone NameB6Ng01-024O01
Chromosome1 (Build37)
Map Location 104,629,289 - 104,630,443
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056
Downstream geneLOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024O01.bB6Ng01-024O01.g
ACCDH856384DH856385
length1,1421,163
definitionDH856384|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O01, 5' end.DH856385|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacccagacatttatttttacagaattttaacataagcatactt
cagaggtgtttcagattgtgtctaaatcacacagataggattgtatttcc
tatcactttgtcattgttagtaaatcaacatttgcttgtatatgctatgg
gctgcttaaatgaattattaatatccagcttcacaaacagattaaaaatg
cagatagatagtaaaagaatataaagttcagaataaacatatgtagatta
tgcaaataaacttccactggtgaaatagcattgtcaaagtcataaaaagt
aagatgctgcttttataatttaactttcagaatggatattccattgtttt
ctgaaaagtttctacctattatggaaatttaggaggtttagagtctatgc
tcaagagatggggtcaattgtctttagtcttcaaatattttaagtagtat
tttccttggctcatttatttccacagcacagttatgcaaggaagaagtct
ttaaaaaggcagatgatatggcaacaaaattttttctaaatgttatttaa
ggtactgagtaaggctactattataactatagtaaaaaaaaaagcagtaa
aacttcactattagacaatgatgatgaggagaaatgtaaaagacagatgg
aaatagacttgaagggttttccatagatcaaggtttatagttaacttcaa
atataatgggaagtaatgaatatcatacaacttagatttttcagtaggaa
atataaatgcacataaaaaattttcaaataaaaaataatttaccagatca
ttatataggctaaaacagtgactctgggagcaaagagagtaattgaggat
tcaggaattagtaattatttcaagttctatcacttcttggcatgaaagtc
tcaaggtatggttaacgttagcagggaaatttgagaggtaactctgacac
tttagctgtatatccaggaccatacccatattagaaaaaggaacaaagaa
aaaaaaagagaagagtaaacccagcttcctatgtctatttgatggggggt
gatattatacccgggaaacataattaagggaaatgcttcgagtctaggga
aatccggctctatgacactctaagtggggttggtgtgtgtgt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccgcaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaataaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgcccgggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaagtacccacagagctaaaggatctgcacctatag
tgaacaacatatgagctaccagtaccccgagctctttgactctagctgca
attatatctaaagatggctagtcgcatcactgtaagagaagcccattgga
tccgcacctttaatgccagatcacggaattccagggctaaaggggatggt
gtggcagagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104629289_104630443
seq2: B6Ng01-024O01.b_44_1185 (reverse)

seq1  --ACACACA-------CACTAAGA-TGTCATAGGAGGCACAGACTCTCCC  40
        |||||||       |||| ||| ||||||| |||   | |  | ||||
seq2  ACACACACACCAACCCCACTTAGAGTGTCATA-GAG---CCGGATTTCCC  46

seq1  TTAGACTCCTGAAGCATGTTCCCTTAAATTTTATGTTTCTCAGGCTATAA  90
       |||||||  ||||||| |||||||||   ||||||||| | || |||||
seq2  -TAGACTC--GAAGCAT-TTCCCTTAA---TTATGTTTC-CCGGGTATAA  88

seq1  TATCAACCACCATCAAATAGGACATAGGAAGGCTGTGGTGTACTTTTCTT  140
      ||||| || |||||||||| |||||||||| |||| ||| |||   ||||
seq2  TATCACCCCCCATCAAATA-GACATAGGAA-GCTG-GGTTTAC---TCTT  132

seq1  CTTTTTTTTTTTCTTTTGTTTCTTTTTTCTAATGTTGGGTATGTGTCCTT  190
      || |||||||||||||   ||| ||||||||||  |||||||| |||| |
seq2  CTCTTTTTTTTTCTTT--GTTCCTTTTTCTAAT-ATGGGTATG-GTCC-T  177

seq1  GGATATACAGCTATAGTTGTCAGAGTTACCTCTCAAATTTCCCTGCTAAC  240
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  GGATATACAGCTAAAG-TGTCAGAGTTACCTCTCAAATTTCCCTGCTAAC  226

seq1  GTTAACCATACCTTGAGACTTTCATGCCAAGAAGTGATAGAACTTGAAAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCATACCTTGAGACTTTCATGCCAAGAAGTGATAGAACTTGAAAT  276

seq1  AATTACTAATTCCTGAATCCTCAATTACTCTCTTTGCTCCCAGAGTCACT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAATTCCTGAATCCTCAATTACTCTCTTTGCTCCCAGAGTCACT  326

seq1  GTTTTAGCCTATATAATGATCTGGTAAATTATTTTTTATTTG-AAATTTT  389
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTTTAGCCTATATAATGATCTGGTAAATTATTTTTTATTTGAAAATTTT  376

seq1  TTATGTGCATTTATATTTCCTACTGAAAAATCTAAGTTGTATGATATTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCATTTATATTTCCTACTGAAAAATCTAAGTTGTATGATATTCA  426

seq1  TTACTTCCCATTATATTTGAAGTTAACTATAAACCTTGATCTATGGAAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCCATTATATTTGAAGTTAACTATAAACCTTGATCTATGGAAAA  476

seq1  CCCTTCAAGTCTATTTCCATCTGTCTTTTACATTTCTCCTCATCATCATT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAGTCTATTTCCATCTGTCTTTTACATTTCTCCTCATCATCATT  526

seq1  GTCTAATAGTGAAGTTTTACTGCTTTTTTTTTTACTATAGTTATAATAGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATAGTGAAGTTTTACTGCTTTTTTTTTTACTATAGTTATAATAGT  576

seq1  AGCCTTACTCAGTACCTTAAATAACATTTAGAAAAAATTTTGTTGCCATA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACTCAGTACCTTAAATAACATTTAGAAAAAATTTTGTTGCCATA  626

seq1  TCATCTGCCTTTTTAAAGACTTCTTCCTTGCATAACTGTGCTGTGGAAAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCCTTTTTAAAGACTTCTTCCTTGCATAACTGTGCTGTGGAAAT  676

seq1  AAATGAGCCAAGGAAAATACTACTTAAAATATTTGAAGACTAAAGACAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCCAAGGAAAATACTACTTAAAATATTTGAAGACTAAAGACAAT  726

seq1  TGACCCCATCTCTTGAGCATAGACTCTAAACCTCCTAAATTTCCATAATA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCATCTCTTGAGCATAGACTCTAAACCTCCTAAATTTCCATAATA  776

seq1  GGTAGAAACTTTTCAGAAAACAATGGAATATCCATTCTGAAAGTTAAATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAACTTTTCAGAAAACAATGGAATATCCATTCTGAAAGTTAAATT  826

seq1  ATAAAAGCAGCATCTTACTTTTTATGACTTTGACAATGCTATTTCACCAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCAGCATCTTACTTTTTATGACTTTGACAATGCTATTTCACCAG  876

seq1  TGGAAGTTTATTTGCATAATCTACATATGTTTATTCTGAACTTTATATTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTATTTGCATAATCTACATATGTTTATTCTGAACTTTATATTC  926

seq1  TTTTACTATCTATCTGCATTTTTAATCTGTTTGTGAAGCTGGATATTAAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATCTATCTGCATTTTTAATCTGTTTGTGAAGCTGGATATTAAT  976

seq1  AATTCATTTAAGCAGCCCATAGCATATACAAGCAAATGTTGATTTACTAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTTAAGCAGCCCATAGCATATACAAGCAAATGTTGATTTACTAA  1026

seq1  CAATGACAAAGTGATAGGAAATACAATCCTATCTGTGTGATTTAGACACA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAAAGTGATAGGAAATACAATCCTATCTGTGTGATTTAGACACA  1076

seq1  ATCTGAAACACCTCTGAAGTATGCTTATGTTAAAATTCTGTAAAAATAAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAACACCTCTGAAGTATGCTTATGTTAAAATTCTGTAAAAATAAA  1126

seq1  TGTCTGGGTGGAATTC  1155
      ||||||||||||||||
seq2  TGTCTGGGTGGAATTC  1142