BAC Information

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BAC

Clone NameB6Ng01-025E24
Chromosome1 (Build37)
Map Location 26,727,369 - 26,756,074
singlet/doubletdoublet
Overlap gene4931408C20Rik
Upstream geneBai3
Downstream geneLOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E24.bB6Ng01-025E24.g
ACCDH856701DH856702
length6461,056
definitionDH856701|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E24, 5' end.DH856702|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,727,369 - 26,728,014)(26,755,004 - 26,756,074)
sequence
gaattcatttagtgaatattaaatagttgtttatggttaatatgtggatt
tgctcattctcagttaacacttacctacttcacagtagaaacttaacgct
gtcttaaagtttattcataaaaatgctctcactttactgctcaaaaatcc
ctaacggttacctattcttctgaagaataaccattttacataaaacttta
cccactgaagtgtcattagtaaatataaaagagtgtacaaaggtgccagt
gacaagagggatgacagagaaagtagattcatatagacatcaaggtaaag
aaaagaatatgtgcacccatattacataaaatatttcagcacagagttag
gtctttggtttctactaatttcagttccgcttctcaaacacaatgttatt
cagtacaatcaactttttatcctaatatctttcttttgttttcttatttt
tgtgccttttattttttatagtacatgacaatacgtttacataatctcta
tttttattttgtaacactattgatcccattttccagagtaaaaatataga
aaaatatcttccttcttctttggttaaattctttccctctccctccctct
ccctctctctctctctctctctctctctctctctctctctctctct
gaattcaaagctttagtaggatgtagatatgtgacatagggcacaaagtc
gggacccagaggagatatgtatttaagtgcacatgaaataactcaaggag
acacaatgagacctataaaaacatctttagataacagccaaatcttgttc
ttcatatatttaatatgtgtagatgtcttcttactaagaataatgtcccc
cttcagaactaacaccccagaacttctgtgactatgactctcatacacag
aagagaaaaaaaaattcagtcttctgttgtacatgtacccagctgaggtc
catcatgttgacagttctgtgacaattttgaaatactttcattgccctct
gtttcttgttatattgcatttgtgggcacctgcatgtatgacttcactat
tcagctatccaatgtactatactgaaaaggctgtccattgatccaaaaca
gaagaaggctgtgagttttgttcttaggtgctgctagccttttcagacat
gtgagaaagaatgtggtataccagacatgtatgttttctgagacaggtgt
attgaagatgcataaaaacaaagttatgtatccattttataaagatttta
tatgtgcctgtatcagtttgactgtatgtcacttggttgtaggaactcgc
agagtgcagaagtgtgggtaagtttcttggggttcaatttccagtctgtt
gagagatgctcatcaaaggtagttaggttcagagttgttttaatgtatct
tttcttatactttttaaaaaatagatattttctttatttacatttcaaat
gtttcccctttcctggtttcccctctgaaaaccccctattcatccctttt
cctgttcaccaagccaccactcccacttccctgtcctggcatcacctaca
ctggggcatgaagtcttctcaggaccagggcctctcctcccatgatgtcc
aaaagtgcatcttctgttacatatgcagccagaagcattagtcctccttt
ggatatcttggtgttgtttgtccctggaagcctggtaactggttgttcaa
ttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26727369_26728014
seq2: B6Ng01-025E24.b_45_690

seq1  GAATTCATTTAGTGAATATTAAATAGTTGTTTATGGTTAATATGTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAGTGAATATTAAATAGTTGTTTATGGTTAATATGTGGATT  50

seq1  TGCTCATTCTCAGTTAACACTTACCTACTTCACAGTAGAAACTTAACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCTCAGTTAACACTTACCTACTTCACAGTAGAAACTTAACGCT  100

seq1  GTCTTAAAGTTTATTCATAAAAATGCTCTCACTTTACTGCTCAAAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAGTTTATTCATAAAAATGCTCTCACTTTACTGCTCAAAAATCC  150

seq1  CTAACGGTTACCTATTCTTCTGAAGAATAACCATTTTACATAAAACTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGGTTACCTATTCTTCTGAAGAATAACCATTTTACATAAAACTTTA  200

seq1  CCCACTGAAGTGTCATTAGTAAATATAAAAGAGTGTACAAAGGTGCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAAGTGTCATTAGTAAATATAAAAGAGTGTACAAAGGTGCCAGT  250

seq1  GACAAGAGGGATGACAGAGAAAGTAGATTCATATAGACATCAAGGTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGGGATGACAGAGAAAGTAGATTCATATAGACATCAAGGTAAAG  300

seq1  AAAAGAATATGTGCACCCATATTACATAAAATATTTCAGCACAGAGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATATGTGCACCCATATTACATAAAATATTTCAGCACAGAGTTAG  350

seq1  GTCTTTGGTTTCTACTAATTTCAGTTCCGCTTCTCAAACACAATGTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGTTTCTACTAATTTCAGTTCCGCTTCTCAAACACAATGTTATT  400

seq1  CAGTACAATCAACTTTTTATCCTAATATCTTTCTTTTGTTTTCTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAATCAACTTTTTATCCTAATATCTTTCTTTTGTTTTCTTATTTT  450

seq1  TGTGCCTTTTATTTTTTATAGTACATGACAATACGTTTACATAATCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTTTATTTTTTATAGTACATGACAATACGTTTACATAATCTCTA  500

seq1  TTTTTATTTTGTAACACTATTGATCCCATTTTCCAGAGTAAAAATATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTGTAACACTATTGATCCCATTTTCCAGAGTAAAAATATAGA  550

seq1  AAAATATCTTCCTTCTTCTTTGGTTAAATTCTTTCCCTCTCCCTCCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTTCCTTCTTCTTTGGTTAAATTCTTTCCCTCTCCCTCCCTCT  600

seq1  CCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  646

seq1: chr1_26755004_26756074
seq2: B6Ng01-025E24.g_65_1120 (reverse)

seq1  AAATA--TGAACCAACCAGTACCCAGAGCTCCCAGGGACAAAACAACCAA  48
      |||||  |||| ||||||||  |||| ||| |||||||| |||||||  |
seq2  AAATAATTGAA-CAACCAGTTACCAG-GCTTCCAGGGAC-AAACAAC--A  45

seq1  CCAAAGAGTACCCACAGAGAGACCTATGGCTCTGGCTGCATATGTAACAG  98
      || |||| || ||| ||   |||  |||  ||||||||||||||||||||
seq2  CC-AAGA-TATCCAAAGGAGGACTAATGCTTCTGGCTGCATATGTAACAG  93

seq1  AAGATGCACTTTTTGGACATCAATGGGAGGAGAGGCCCTTGGTCCTGAGA  148
      ||||||||| ||||||||||| |||||||||||||||| |||||||||||
seq2  AAGATGCAC-TTTTGGACATC-ATGGGAGGAGAGGCCC-TGGTCCTGAGA  140

seq1  AGACTCAATGCCCCAGTGTAGGTGAATGCCAGGACAGGGAAGTGGGAGTG  198
      |||||  ||||||||||||||||| |||||||||||||||||||||||| 
seq2  AGACTTCATGCCCCAGTGTAGGTG-ATGCCAGGACAGGGAAGTGGGAGT-  188

seq1  GGTGGCTTGGTGAACAGGGAAAAGGGGATGAATAGGGGGTTTTCAGAGGG  248
      ||||||||||||||||||  ||| ||||||||||||||||||||||||||
seq2  GGTGGCTTGGTGAACAGG--AAAAGGGATGAATAGGGGGTTTTCAGAGGG  236

seq1  GAAACCAGGAAAGGGGAAAACATTTGAAATGTAAATAAAGAAAATATCTA  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAACCAGGAAAGGGG-AAACATTTGAAATGTAAATAAAGAAAATATCTA  285

seq1  TTTTTTTAAAAAGTATAAGAAAAGATACATTAAAAACAACTCTGAACCTA  348
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  -TTTTTTAAAAAGTATAAGAAAAGATACATT-AAAACAACTCTGAACCTA  333

seq1  ACTACCTTTGATGAGCATCTCTCAACAGACTGGAAATTGAACCCCAAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTTGATGAGCATCTCTCAACAGACTGGAAATTGAACCCCAAGAA  383

seq1  ACTTACCCACACTTCTGCACTCTGCGAGTTCCTACAACCAAGTGACATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCCACACTTCTGCACTCTGCGAGTTCCTACAACCAAGTGACATAC  433

seq1  AGTCAAACTGATACAGGCACATATAAAATCTTTATAAAATGGATACATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACTGATACAGGCACATATAAAATCTTTATAAAATGGATACATAA  483

seq1  CTTTGTTTTTATGCATCTTCAATACACCTGTCTCAGAAAACATACATGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTATGCATCTTCAATACACCTGTCTCAGAAAACATACATGTC  533

seq1  TGGTATACCACATTCTTTCTCACATGTCTGAAAAGGCTAGCAGCACCTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATACCACATTCTTTCTCACATGTCTGAAAAGGCTAGCAGCACCTAA  583

seq1  GAACAAAACTCACAGCCTTCTTCTGTTTTGGATCAATGGACAGCCTTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAACTCACAGCCTTCTTCTGTTTTGGATCAATGGACAGCCTTTTC  633

seq1  AGTATAGTACATTGGATAGCTGAATAGTGAAGTCATACATGCAGGTGCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGTACATTGGATAGCTGAATAGTGAAGTCATACATGCAGGTGCCC  683

seq1  ACAAATGCAATATAACAAGAAACAGAGGGCAATGAAAGTATTTCAAAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCAATATAACAAGAAACAGAGGGCAATGAAAGTATTTCAAAATT  733

seq1  GTCACAGAACTGTCAACATGATGGACCTCAGCTGGGTACATGTACAACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAACTGTCAACATGATGGACCTCAGCTGGGTACATGTACAACAG  783

seq1  AAGACTGAATTTTTTTTTCTCTTCTGTGTATGAGAGTCATAGTCACAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAATTTTTTTTTCTCTTCTGTGTATGAGAGTCATAGTCACAGAA  833

seq1  GTTCTGGGGTGTTAGTTCTGAAGGGGGACATTATTCTTAGTAAGAAGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGGTGTTAGTTCTGAAGGGGGACATTATTCTTAGTAAGAAGACA  883

seq1  TCTACACATATTAAATATATGAAGAACAAGATTTGGCTGTTATCTAAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACATATTAAATATATGAAGAACAAGATTTGGCTGTTATCTAAAGA  933

seq1  TGTTTTTATAGGTCTCATTGTGTCTCCTTGAGTTATTTCATGTGCACTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATAGGTCTCATTGTGTCTCCTTGAGTTATTTCATGTGCACTTA  983

seq1  AATACATATCTCCTCTGGGTCCCGACTTTGTGCCCTATGTCACATATCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATCTCCTCTGGGTCCCGACTTTGTGCCCTATGTCACATATCTA  1033

seq1  CATCCTACTAAAGCTTTGAATTC  1071
      |||||||||||||||||||||||
seq2  CATCCTACTAAAGCTTTGAATTC  1056