BAC Information

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BAC

Clone NameB6Ng01-025F20
Chromosome1 (Build37)13 (Build37)
Map Location 153,480,406 - 153,481,55028,577,325 - 28,577,460
singlet/doubletsingletsinglet
Overlap geneNiban
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2
Downstream geneEdem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F20.bB6Ng01-025F20.g
ACCDH856737DH856738
length1,145858
definitionDH856737|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F20, 5' end.DH856738|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,480,406 - 153,481,550)(28,577,325 - 28,577,460)
sequence
gaattcccacaatgagagtataaatgatgagcaaaatttgccctttagtt
ccaggtaagcactgtttggtctgtgtgaggagtaccatgctaattgtgga
tgctaatgtttgctctcttacaagcactacaatgaaaggaaagaaggtgg
ccatcctattatgatgaattctgtggggctattaaagccaattttctact
acctgcccaagtctcctactggtatgccctgcttctaccaaggtgccttt
acactagcctcccactgtatgtgaaaagtgtttctgggatctgaatatct
gcgtgtgacaccctcaacacagcaccaagtcactcttacaaagaaaattg
cagatttcttgtatttacttaatgactggttcaaatgtaaagtaaaacag
ctaatagcatcaaaagatgaaggaaaaaaaacaaagtcgatctaaaatgc
atctagacattagattgaacctgtctggacctacataagggaacacccac
tttgaagactttgaggataaaggcaaaacctggggttgggtcaacaatac
cactgtggtaggaaggtggactctggactcaggcaaagatggcagaagta
tttctgccatttgctggctatgtggagtagcttcacagaatttattataa
caatcacacgaaatacctcattaaaagttcttggtgccatggctggcaca
gagtaacaaagtggctagaaggttggggatactgggaagccccctagccc
aggtaccagaagacacccctcagtttgaactaatgaactaagaaaataaa
aaataagaaagcagcccgtttactgtactcttgagttggacacatcttgg
atttgcagaagagaaagcactaactgtcccatgcacggagggcctgaaac
aaatatcacctgcatttccatagatgtgtttagcttaggttgtcctctgt
ggttcccggagtaaaaatcaactacataattgccagaacagaatggcttc
gagcctgtattccagtgggctgggaattccatgccagatagggctaaata
gtgacccttgtctcaaaaagccaaacaaaactgaaaacctcactactaaa
accttattcattgaccagttgaaggcaaggcaagttagcttctgt
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcattcttaatcatcaggaaaaggcaaatcaaaacaaacctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagagaaacactcctccattgatggtg
ggattgtaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaaccatccagaagaaggacacatgctccag
tatgtttatagcagccttatttataatagctagaagctgaaaagaaccca
gatgcccctcaagagaggaatggatacagaaaatgtggtacatttacaca
atggagtactattcagctattaaaaagaatgaatttatgaaattcctagg
caaatggatggacctggagggcatcatcctgagtgaggtaacccaatcac
aaaagaactcacatgatatgtactcgctgataagtggatattagcccaga
aaacttctaatacccaagatacaagatacaatttgcaaaacacatgaaac
tcaagaagaatgaagaccaatgtgtggacactttgcctcttcttagattt
aggaacaaaacacccatggaaggagttacagagacaaagtttggagctga
gacggaaggatggaccatctagagactgccatacccggggatccatccca
taatcagcctccaaaatgctgacactattgctacactaacaagattttgc
tgaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153480406_153481550
seq2: B6Ng01-025F20.b_35_1179 (reverse)

seq1  ACAGAGGCTAACTGTGCCTTTGCCTTCACTTGGTCAATG-ATAAGGTTTT  49
      ||||| ||||||| |||| |||||||||  ||||||||| ||||||||||
seq2  ACAGAAGCTAACT-TGCC-TTGCCTTCAACTGGTCAATGAATAAGGTTTT  48

seq1  ATGTAGTTGAGGGTTTTCAGTTTAGTTTGGCTTTTTGAGACAGGGGTTCA  99
      | |||| ||| |||||||||||| |||||||||||||||||| ||| |||
seq2  A-GTAG-TGA-GGTTTTCAGTTTTGTTTGGCTTTTTGAGACAAGGG-TCA  94

seq1  CTATTTAGCCCATACTGGCATTGAATTGCCA-AGCACTGGAATTACAGGC  148
      |||||||||||   ||||||| ||||| |||   |||||||| |||||||
seq2  CTATTTAGCCCTATCTGGCATGGAATTCCCAGCCCACTGGAA-TACAGGC  143

seq1  TCG-AGCCACTCTG-TCTGGC-ATTATGTAGTTGATTTTTAACTCAGGGA  195
      ||| ||||| |||| |||||| |||||||||||||||||| |||| ||||
seq2  TCGAAGCCATTCTGTTCTGGCAATTATGTAGTTGATTTTT-ACTCCGGGA  192

seq1  TACACAGAGGACAACCTAAGCTAAACACATCTATGGAAATGCAGGTGATA  245
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGGACAACCTAAGCTAAACACATCTATGGAAATGCAGGTGATA  242

seq1  TTTGTTTCAGGCCCTCCGTGCATGGGACAGTTAGTTGCTTTCTCTTCTGC  295
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTGTTTCAGGCCCTCCGTGCATGGGACAGTTAG-TGCTTTCTCTTCTGC  291

seq1  AAAT-CAAGATGTGTCCAACTCAAGAGTACAGTAAACGGGCTGCTTTCTT  344
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAGATGTGTCCAACTCAAGAGTACAGTAAACGGGCTGCTTTCTT  341

seq1  ATTTTTTATTTTCTTAGTTCATTAGTTCAAACTGAGGGGTGTCTTCTGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTTTCTTAGTTCATTAGTTCAAACTGAGGGGTGTCTTCTGGT  391

seq1  A-CTTGGCTAGGGGGCTT-CCAGTATCCCCAACCTTCTAGCCACTTTGTT  442
      | || ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCTGGGCTAGGGGGCTTCCCAGTATCCCCAACCTTCTAGCCACTTTGTT  441

seq1  ACTCTGTGCCAGCCATGGCACCAAGAACTTTTAATGAGGTATTTCGTGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGCCAGCCATGGCACCAAGAACTTTTAATGAGGTATTTCGTGTG  491

seq1  ATTGTTATAAT-AATTCTGTGAAGCTACTCCACATAGCCAGCAAATGGCA  541
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATAATAAATTCTGTGAAGCTACTCCACATAGCCAGCAAATGGCA  541

seq1  GAAATACTTCTGCCATCTTTGCCTGAGTCCAGAGTCCACCTTCCTACCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTCTGCCATCTTTGCCTGAGTCCAGAGTCCACCTTCCTACCAC  591

seq1  AGTGGTATTGTTGACCCAACCCCAGGTTTTGCCTTTATCCTCAAAGTCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATTGTTGACCCAACCCCAGGTTTTGCCTTTATCCTCAAAGTCTT  641

seq1  CAAAGTGGGTGTTCCCTTATGTAGGTCCAGACAGGTTCAATCTAATGTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGGTGTTCCCTTATGTAGGTCCAGACAGGTTCAATCTAATGTCT  691

seq1  AGATGCATTTTAGATCGACTTTGTTTTTTTTCCTTCATCTTTTGATGCTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATTTTAGATCGACTTTGTTTTTTTTCCTTCATCTTTTGATGCTA  741

seq1  TTAGCTGTTTTACTTTACATTTGAACCAGTCATTAAGTAAATACAAGAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTTTTACTTTACATTTGAACCAGTCATTAAGTAAATACAAGAAA  791

seq1  TCTGCAATTTTCTTTGTAAGAGTGACTTGGTGCTGTGTTGAGGGTGTCAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATTTTCTTTGTAAGAGTGACTTGGTGCTGTGTTGAGGGTGTCAC  841

seq1  ACGCAGATATTCAGATCCCAGAAACACTTTTCACATACAGTGGGAGGCTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGATATTCAGATCCCAGAAACACTTTTCACATACAGTGGGAGGCTA  891

seq1  GTGTAAAGGCACCTTGGTAGAAGCAGGGCATACCAGTAGGAGACTTGGGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGGCACCTTGGTAGAAGCAGGGCATACCAGTAGGAGACTTGGGC  941

seq1  AGGTAGTAGAAAATTGGCTTTAATAGCCCCACAGAATTCATCATAATAGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTAGAAAATTGGCTTTAATAGCCCCACAGAATTCATCATAATAGG  991

seq1  ATGGCCACCTTCTTTCCTTTCATTGTAGTGCTTGTAAGAGAGCAAACATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACCTTCTTTCCTTTCATTGTAGTGCTTGTAAGAGAGCAAACATT  1041

seq1  AGCATCCACAATTAGCATGGTACTCCTCACACAGACCAAACAGTGCTTAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCACAATTAGCATGGTACTCCTCACACAGACCAAACAGTGCTTAC  1091

seq1  CTGGAACTAAAGGGCAAATTTTGCTCATCATTTATACTCTCATTGTGGGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTAAAGGGCAAATTTTGCTCATCATTTATACTCTCATTGTGGGA  1141

seq1  ATTC  1145
      ||||
seq2  ATTC  1145

seq1: chr13_28577325_28577460
seq2: B6Ng01-025F20.g_794_929 (reverse)

seq1  TCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAG-TGTTTGGA  49
      ||||||||||||||||||| ||||||| ||||| |||||||   ||||||
seq2  TCCTTTCAGCAAAATCTTGTTAGTGTA-GCAATAGTGTCAGCATTTTGGA  49

seq1  AGCCGATTATGGGATGGATCCCCGGATATGGCAGTCTCTAGATGGTCCAT  99
       || ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCTGATTATGGGATGGATCCCCGGGTATGGCAGTCTCTAGATGGTCCAT  99

seq1  CCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACTC  136
      |||| | ||||||||||||||||||||||||||||||
seq2  CCTTCCGTCTCAGCTCCAAACTTTGTCTCTGTAACTC  136