BAC Information

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BAC

Clone NameB6Ng01-025H13
Chromosome1 (Build37)
Map Location 34,411,512 - 34,531,616
singlet/doubletdoublet
Overlap geneLOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18
Upstream geneEG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913
Downstream geneTesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H13.bB6Ng01-025H13.g
ACCDH856810DH856811
length555965
definitionDH856810|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H13, 5' end.DH856811|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,531,062 - 34,531,616)(34,411,512 - 34,412,462)
sequence
aggacctttaagagcagtcagtgcttttaaccactgagccatctctccag
ccgccccacccccaccccgagactttcaccttagaatttagattcactga
gctgctaaagattcccaaggtttcccagtcatccctggttcctgttggcc
gagctgttcgtggcacagatcttctagcacttgacaatgagagtagacac
tgtggccaaataagacaagtttcataacctcctcccccccccaacactaa
aaggcgaatgcttcccaggaccgccatgaacctgggagcctgcagctggc
tgtggtctgagatccatgaagccacataaggctcttgagttgagtttttg
gctcactcctcactgaattctacgaaaatcattttaatgtttgcctagat
acgcaagttcatggtaggagccttcatcagattcaagacaggaattgcaa
gagcctggagaaagcatagccaggactgactggatgaacaactgccatac
agaccctcctgtgttggtgacattgtggcagtggggcggggtggggttgg
gggtg
gaattctcttagctcgtgcatgtcactttgaaatttgaattcaagtgggg
ttagaagactatcagaatatatgtatgtttcaggatatttgacctgccat
taaaaaaaaaaacaaatagttttacactgctagaaaaaaaagtgatctaa
aatctttattgacatgagaaaacattcattttctaaccttatttggcaat
ttaacaatgatatcaattgtatgcattttaattcatatatatttcaataa
taataataataataatttgggagttgttggagatacagttcagtagtaga
actctttggtacttttcccacaaagtcagttctcattgcccattccccca
tcccgtatacataggctggctctgtgacttgtttctaaagcatagaattg
tgggagtgatgtttgctgtatacttccaagagtaggttttacacacacac
acacacacacacacacactacaacccagccttttttcctctcctttctct
ttctttctatgtcatgatacgatccttgggattgtgacatatagctggca
agtaagagtctggttctccagaagtttcttcgctggaggcagcaggaaga
aagaccctgcagaaagcataagagagtgcaggaccccagttgttccagtt
ccagctgtttggtgcccctgcctagacatcaggcacagagcaagtgagag
ctcagataacgacaacgtcaggacaagtgtctcagctgctcttctatgct
aagtgaaccaaatgtaagccgtgcctatcatcaagcactgttcaaatcgt
tgtctgtagacaagagcaaatgctgtttttattttaaaataaaaaaaagt
ttctcttagggtctgtataacatctgcccaggatctctagctttcatagt
ctctagtctgccctatatgtacttgaccttttcccttactgctttatatc
ttcttgtttgatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34531062_34531616
seq2: B6Ng01-025H13.b_39_593 (reverse)

seq1  CACCCCCAACCCCACCCCGCCCCACTGCCACAATGTCACCAACACAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAACCCCACCCCGCCCCACTGCCACAATGTCACCAACACAGGAG  50

seq1  GGTCTGTATGGCAGTTGTTCATCCAGTCAGTCCTGGCTATGCTTTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTATGGCAGTTGTTCATCCAGTCAGTCCTGGCTATGCTTTCTCCA  100

seq1  GGCTCTTGCAATTCCTGTCTTGAATCTGATGAAGGCTCCTACCATGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGCAATTCCTGTCTTGAATCTGATGAAGGCTCCTACCATGAACT  150

seq1  TGCGTATCTAGGCAAACATTAAAATGATTTTCGTAGAATTCAGTGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTATCTAGGCAAACATTAAAATGATTTTCGTAGAATTCAGTGAGGAG  200

seq1  TGAGCCAAAAACTCAACTCAAGAGCCTTATGTGGCTTCATGGATCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAAAACTCAACTCAAGAGCCTTATGTGGCTTCATGGATCTCAGA  250

seq1  CCACAGCCAGCTGCAGGCTCCCAGGTTCATGGCGGTCCTGGGAAGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCAGCTGCAGGCTCCCAGGTTCATGGCGGTCCTGGGAAGCATTC  300

seq1  GCCTTTTAGTGTTGGGGGGGGGAGGAGGTTATGAAACTTGTCTTATTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAGTGTTGGGGGGGGGAGGAGGTTATGAAACTTGTCTTATTTGG  350

seq1  CCACAGTGTCTACTCTCATTGTCAAGTGCTAGAAGATCTGTGCCACGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTCTACTCTCATTGTCAAGTGCTAGAAGATCTGTGCCACGAAC  400

seq1  AGCTCGGCCAACAGGAACCAGGGATGACTGGGAAACCTTGGGAATCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGCCAACAGGAACCAGGGATGACTGGGAAACCTTGGGAATCTTTA  450

seq1  GCAGCTCAGTGAATCTAAATTCTAAGGTGAAAGTCTCGGGGTGGGGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAGTGAATCTAAATTCTAAGGTGAAAGTCTCGGGGTGGGGGTGG  500

seq1  GGCGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTAAAG  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCGGCTGGAGAGATGGCTCAGTGGTTAAAAGCACTGACTGCTCTTAAAG  550

seq1  GTCCT  555
      |||||
seq2  GTCCT  555

seq1: chr1_34411512_34412462
seq2: B6Ng01-025H13.g_66_1010

seq1  GAATTCTCTTAGCTCGTGCATGTCACTTTGAAATTTGAATTCAAGTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGCTCGTGCATGTCACTTTGAAATTTGAATTCAAGTGGGG  50

seq1  TTAGAAGACTATCAGAATATATGTATGTTTCAGGATATTTGACCTGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGACTATCAGAATATATGTATGTTTCAGGATATTTGACCTGCCAT  100

seq1  TAAAAAAAAAAACAAATAGTTTTACACTGCTAGAAAAAAAAGTGATCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAACAAATAGTTTTACACTGCTAGAAAAAAAAGTGATCTAA  150

seq1  AATCTTTATTGACATGAGAAAACATTCATTTTCTAACCTTATTTGGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTATTGACATGAGAAAACATTCATTTTCTAACCTTATTTGGCAAT  200

seq1  TTAACAATGATATCAATTGTATGCATTTTAATTCATATATATTTCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATGATATCAATTGTATGCATTTTAATTCATATATATTTCAATAA  250

seq1  TAATAATAATAATAATTTGGGAGTTGTTGGAGATACAGTTCAGTAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATTTGGGAGTTGTTGGAGATACAGTTCAGTAGTAGA  300

seq1  ACTCTTTGGTACTTTTCCCACAAAGTCAGTTCTCATTGCCCATTCCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGGTACTTTTCCCACAAAGTCAGTTCTCATTGCCCATTCCCCCA  350

seq1  TCCCGTATACATAGGCTGGCTCTGTGACTTGTTTCTAAAGCATAGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTATACATAGGCTGGCTCTGTGACTTGTTTCTAAAGCATAGAATTG  400

seq1  TGGGAGTGATGTTTGCTGTATACTTCCAAGAGTAGGTTTTACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGATGTTTGCTGTATACTTCCAAGAGTAGGTTTTACACACACAC  450

seq1  ACACACACACACACACACTACAACCCAGCCTTTTTTCCTCTCCTTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACTACAACCCAGCCTTTTTTCCTCTCCTTTCTCT  500

seq1  TTCTTTCTATGTCATGATACGATCCTTGGGATTGTGACATATAGCTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTATGTCATGATACGATCCTTGGGATTGTGACATATAGCTGGCA  550

seq1  AGTAAGAGTCTGGTTCTCCAGAAGTTTCTTCGCTGGAGGCAGCAGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGTCTGGTTCTCCAGAAGTTTCTTCGCTGGAGGCAGCAGGAAGA  600

seq1  AAGACCCTGCAGAAAGCATAAGAGAGTGCAGGACCCCAGTTGTTCCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTGCAGAAAGCATAAGAGAGTGCAGGACCCCAGTTGTTCCAGTT  650

seq1  CCAGCTGTTTGGTGCCCCTGCCTAGACATCAGGCACAGAGCAAGTGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTTTGGTGCCCCTGCCTAGACATCAGGCACAGAGCAAGTGAGAG  700

seq1  CTCAGATAACGACAACGTCAGGACAAGTGTCTCAGCTGCTCTTCTATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATAACGACAACGTCAGGACAAGTGTCTCAGCTGCTCTTCTATGCT  750

seq1  AAGTGAACCAAATGTAAGCCGTGCCTATCATCAAGCACTGTTCAAATCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACCAAATGTAAGCCGTGCCTATCATCAAGCACTGTTCAAATCGT  800

seq1  TGTCTGTAGACAAGAGCAAATGCTGTTTTTAATTTTAAAATAAAAAAAGT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||  
seq2  TGTCTGTAGACAAGAGCAAATGCTGTTTTT-ATTTTAAAATAAAAAAAAG  849

seq1  TTTCTCTTAGGGTCTGTATAACATCTGCCCAGGATCTTCTAGCTTTCATA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCTCTTAGGGTCTGTATAACATCTGCCCAGGATC-TCTAGCTTTCATA  898

seq1  GTCTCTAGGTCTGCCCTTATATGTTACTTGACCTTTTTCCCTTACTGCTT  950
      ||||||| |||||||| |||||| ||||||||| ||||||||||||||||
seq2  GTCTCTA-GTCTGCCC-TATATG-TACTTGACC-TTTTCCCTTACTGCTT  944

seq1  T  951
      |
seq2  T  945