BAC Information

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BAC

Clone NameB6Ng01-025H23
Chromosome1 (Build37)
Map Location 92,909,008 - 93,082,752
singlet/doubletdoublet
Overlap geneLrrfip1, Gm817, LOC665766, Ramp1
Upstream geneAsb18, Iqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
Downstream geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H23.bB6Ng01-025H23.g
ACCDH856830DH856831
length1,142994
definitionDH856830|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H23, 5' end.DH856831|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,081,600 - 93,082,752)(92,909,008 - 92,909,992)
sequence
gaattccctgaaaaatatgatgggagggaatttgacacagtcctaggaaa
tcaacagatgtcactacaaagacgattcaagattccaagcagcaagacag
gcaaggaaaacccctccaaggtagtcagccacagtcctgactcgagggag
aagtgaggactctcaggtcctgcaggaactgtcatcctgccttggtactc
agggacagaggtgatgttgctgtggtggttagtgtggaaaggaacctctg
tcctagagaaagccacaggggaaagtggaggagtgacctaactaggaaaa
atgaatgagaaagaccccttcgggcagtttgggcagaacaaacaggtgcc
tcttgggcgcttcatccaggaagggagaaggcacctggtggctgtctcta
ttattactctcggcaggccagcagggcaagctgctctgtgtgtgttacta
tttcttccttagtgtgacaaaacatttcatccgtggagagaccgagcatc
ctccatccttccgtcatgtgctcatctctataagacaatgagatgaaagt
cccgtactacaagagtaaggcagatatttagcagacttactaccacagtt
tacagaagaggaaggctgctgaggccagcccccccaccccactccagggt
gagaacaaaagaaaaaccataaagccaagaggaccttcctggccgaaaac
tgtcctagtgacttgttgggaaaagagctcttaagaaaagagctcaaaat
accaaaacaagaacacaaagagaagagaagatacccaccccccaccccac
cccaggacacacagagttgtctgttgggccttaggacatagcttggtatg
caaggcacttatcagcaagcctgtggacaggagctcattgccaggaccta
tgtggcagcaagagaagctcaacgcctttctgcaggttgccctctacctc
cactgtgagcatgatataacttgcctaccccatacacatgcagcaaatga
tacatttccaaaaaagtgtggttttagtttagtcaacattaggaacagtt
tagggaatgcatttcttgtgtagcacaaacaaaaccacaggactccaagg
ggtaaccttcagaagagagtcattcatgaaacgtccaaaggg
gaattcactgtctgctccctccttcacctgctggctttcctcctgaaatg
tgtcccttccccagcttcctctccttgattagtgggctgttgtcccctct
tgccccttcccccaccagcaccctgagccctccaagctgcccagccgtgt
gattggtgggcctcctgctgccaaggtaccgctggtgggagaaaggcggt
caaaggcttagagtgacttcctgtttagtttgtggacactaacgtatgtt
gggaacgtctataagtatactgttcttttcccaggcaattaaccagtctc
tgtcgaagtccatacatgggtggatggagtggcttttatggctagcccat
tcttaatcgtcacagctcctcagttcacagcacactcaggaactgtaaac
cctgtgccctttagcttcctcagaggtcaccagcaaagggccagcaaccc
cagagaccacagtcatccctgtggccaaggcctttgggctcttcttgctg
tgagaacatttcctcccggcttcccagcccagcagcgtcccctaagaggc
tccctgagtcacactgagtcttttcatggagaaagcagcattggccattc
accttgagctccacagtttcccatgcgccagctttgccatctccaatgaa
gccacagggtcactgagccccagtgctccctcctgagggatggagggctg
tcataaaatcatggcgcatgtgagctggggtgaatgtcatacgtgtggtg
agctctccgtgcacatcctcaaaactgcagcagacatcgtgctggccaca
gacgtgtgtgtgtgtgtggtgtgtggtgtgttgcaatgatcacctgccct
gttatttgtgcttaagaagtagagggctgatacctggttccccagtcaaa
actcttctcagaactggaaattcccgtgtgcctcttttccccctggagct
tccgggtttcttgtcacctggtcccctctagactcctggctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93081600_93082752
seq2: B6Ng01-025H23.b_42_1184 (reverse)

seq1  CCCTTTGGA-GTCTCATTGAATGACTCCTCTCTGAGGGTTACCCCTTTGG  49
      ||||||||| || ||| ||||||||||   ||||| ||||||||| ||||
seq2  CCCTTTGGACGTTTCA-TGAATGACTCTCTTCTGAAGGTTACCCC-TTGG  48

seq1  AGTCCTGTGGTTTTTGTCTGCTGCTACAAATGAAATGCATTCCCTCAACT  99
      |||||||||| |||||| || ||||||| | |||||||||||||| ||||
seq2  AGTCCTGTGG-TTTTGTTTG-TGCTACACAAGAAATGCATTCCCTAAACT  96

seq1  GGTTCCTAACTGTCTGAACTAAAGCTAAAAAGCACACTTTTTTAGAAAAT  149
       |||||||| ||| || |||||| || |||| ||||||||||| | ||||
seq2  -GTTCCTAA-TGT-TG-ACTAAA-CT-AAAACCACACTTTTTT-GGAAAT  139

seq1  GTATTCATTTGCTTGCATGTGTATGGGTGTAGGCAAG-TATATCATGGCT  198
      ||| |||||||| |||||||||||||| ||||||||| |||||||| |||
seq2  GTA-TCATTTGC-TGCATGTGTATGGG-GTAGGCAAGTTATATCAT-GCT  185

seq1  CACAGGTGGAGGTAGAGGGCAACTTGCAGGAAGGCGCTGGTGCTCTCTTG  248
      |||| |||||||||||||||||| ||||| |||||| ||    |||||||
seq2  CACA-GTGGAGGTAGAGGGCAACCTGCAGAAAGGCGTTGAGCTTCTCTTG  234

seq1  CTGCCACATAGGTCCTGGCAATGAGCTCCTGTCCACAGGCTTGCTGATAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACATAGGTCCTGGCAATGAGCTCCTGTCCACAGGCTTGCTGATAA  284

seq1  GTGCCTTTGCATACCAAGCTATGTCCTAAGGCCCAACAGAC-ACTCTGTG  347
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGCC-TTGCATACCAAGCTATGTCCTAAGGCCCAACAGACAACTCTGTG  333

seq1  TGTCCTGGGGTGGGGTGGGGGGTGGGTATC-TCTCTTCTCTTTGTGTTTC  396
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TGTCCTGGGGTGGGGTGGGGGGTGGGTATCTTCTCTTCTCTTTGTG-TTC  382

seq1  TTG-TTTGGTA-TTTGAGCTCTTTTCCTAAGAGCTCTTTTCCCAACAAGT  444
      ||| ||||||| |||||||||||||| |||||||||||||||||||||||
seq2  TTGTTTTGGTATTTTGAGCTCTTTTCTTAAGAGCTCTTTTCCCAACAAGT  432

seq1  CACTAGGACAG-TTTCGGCCAGGAAGGTCCTCTTGGCTTTATGGTTTTTC  493
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGACAGTTTTCGGCCAGGAAGGTCCTCTTGGCTTTATGGTTTTTC  482

seq1  TTTTGTTCTCACCCTGGAGTGGGGTGGGGGGGCTGGCCTCAGCAGCCTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTCACCCTGGAGTGGGGTGGGGGGGCTGGCCTCAGCAGCCTTC  532

seq1  CTCTTCTGTAAACTGTGGTAGTAAGTCTGCTAAATATCTGCCTTACTCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTAAACTGTGGTAGTAAGTCTGCTAAATATCTGCCTTACTCTT  582

seq1  GTAGTACGGGACTTTCATCTCATTGTCTTATAGAGATGAGCACATGACGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACGGGACTTTCATCTCATTGTCTTATAGAGATGAGCACATGACGG  632

seq1  AAGGATGGAGGATGCTCGGTCTCTCCACGGATGAAATGTTTTGTCACACT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGAGGATGCTCGGTCTCTCCACGGATGAAATGTTTTGTCACACT  682

seq1  AAGGAAGAAATAGTAACACACACAGAGCAGCTTGCCCTGCTGGCCTGCCG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAATAGTAACACACACAGAGCAGCTTGCCCTGCTGGCCTGCCG  732

seq1  AGAGTAATAATAGAGACAGCCACCAGGTGCCTTCTCCCTTCCTGGATGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATAATAGAGACAGCCACCAGGTGCCTTCTCCCTTCCTGGATGAA  782

seq1  GCGCCCAAGAGGCACCTGTTTGTTCTGCCCAAACTGCCCGAAGGGGTCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCAAGAGGCACCTGTTTGTTCTGCCCAAACTGCCCGAAGGGGTCTT  832

seq1  TCTCATTCATTTTTCCTAGTTAGGTCACTCCTCCACTTTCCCCTGTGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCATTTTTCCTAGTTAGGTCACTCCTCCACTTTCCCCTGTGGCT  882

seq1  TTCTCTAGGACAGAGGTTCCTTTCCACACTAACCACCACAGCAACATCAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGGACAGAGGTTCCTTTCCACACTAACCACCACAGCAACATCAC  932

seq1  CTCTGTCCCTGAGTACCAAGGCAGGATGACAGTTCCTGCAGGACCTGAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCTGAGTACCAAGGCAGGATGACAGTTCCTGCAGGACCTGAGA  982

seq1  GTCCTCACTTCTCCCTCGAGTCAGGACTGTGGCTGACTACCTTGGAGGGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACTTCTCCCTCGAGTCAGGACTGTGGCTGACTACCTTGGAGGGG  1032

seq1  TTTTCCTTGCCTGTCTTGCTGCTTGGAATCTTGAATCGTCTTTGTAGTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGCCTGTCTTGCTGCTTGGAATCTTGAATCGTCTTTGTAGTGA  1082

seq1  CATCTGTTGATTTCCTAGGACTGTGTC-CATTCCCTCCCATCATATTTTT  1142
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  CATCTGTTGATTTCCTAGGACTGTGTCAAATTCCCTCCCATCATATTTTT  1132

seq1  CAGGGAATTCC  1153
      |||||||||||
seq2  CAGGGAATTCC  1143

seq1: chr1_92909008_92909992
seq2: B6Ng01-025H23.g_69_1062

seq1  GAATTCACTGTCTGCTCCCTCCTTCACCTGCTGGCTTTCCTCCTGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTGCTCCCTCCTTCACCTGCTGGCTTTCCTCCTGAAATG  50

seq1  TGTCCCTTCCCCAGCTTCCTCTCCTTGATTAGTGGGCTGTTGTCCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTCCCCAGCTTCCTCTCCTTGATTAGTGGGCTGTTGTCCCCTCT  100

seq1  TGCCCCTTCCCCCACCAGCACCCTGAGCCCTCCAAGCTGCCCAGCCGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTCCCCCACCAGCACCCTGAGCCCTCCAAGCTGCCCAGCCGTGT  150

seq1  GATTGGTGGGCCTCCTGCTGCCAAGGTACCGCTGGTGGGAGAAAGGCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTGGGCCTCCTGCTGCCAAGGTACCGCTGGTGGGAGAAAGGCGGT  200

seq1  CAAAGGCTTAGAGTGACTTCCTGTTTAGTTTGTGGACACTAACGTATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTTAGAGTGACTTCCTGTTTAGTTTGTGGACACTAACGTATGTT  250

seq1  GGGAACGTCTATAAGTATACTGTTCTTTTCCCAGGCAATTAACCAGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGTCTATAAGTATACTGTTCTTTTCCCAGGCAATTAACCAGTCTC  300

seq1  TGTCGAAGTCCATACATGGGTGGATGGAGTGGCTTTTATGGCTAGCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGAAGTCCATACATGGGTGGATGGAGTGGCTTTTATGGCTAGCCCAT  350

seq1  TCTTAATCGTCACAGCTCCTCAGTTCACAGCACACTCAGGAACTGTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCGTCACAGCTCCTCAGTTCACAGCACACTCAGGAACTGTAAAC  400

seq1  CCTGTGCCCTTTAGCTTCCTCAGAGGTCACCAGCAAAGGGCCAGCAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCTTTAGCTTCCTCAGAGGTCACCAGCAAAGGGCCAGCAACCC  450

seq1  CAGAGACCACAGTCATCCCTGTGGCCAAGGCCTTTGGGCTCTTCTTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCACAGTCATCCCTGTGGCCAAGGCCTTTGGGCTCTTCTTGCTG  500

seq1  TGAGAACATTTCCTCCCGGCTTCCCAGCCCAGCAGCGTCCCCTAAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATTTCCTCCCGGCTTCCCAGCCCAGCAGCGTCCCCTAAGAGGC  550

seq1  TCCCTGAGTCACACTGAGTC-TTTCATGGAGAAAGCAGCATTGGCCATTC  599
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCCTGAGTCACACTGAGTCTTTTCATGGAGAAAGCAGCATTGGCCATTC  600

seq1  ACCTTGAGCTCCACAG-TTCCCATGCGCCAGCTTTGCCATCTCCAATGAA  648
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCTTGAGCTCCACAGTTTCCCATGCGCCAGCTTTGCCATCTCCAATGAA  650

seq1  GCCACAGGGTCACTGAGCCCCAGTGCTCCCTCCTGAGGGATGGA-GGCTG  697
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCACAGGGTCACTGAGCCCCAGTGCTCCCTCCTGAGGGATGGAGGGCTG  700

seq1  TCATAAAATCATGGCGCATGTGAGCTGGGGTGAATGTCATACGTGTGGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATCATGGCGCATGTGAGCTGGGGTGAATGTCATACGTGTGGTG  750

seq1  AGCTCTCCGTGCACATCCTCAGAAACTGCAGCAGACATCGTGCTGGCCAC  797
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCTCTCCGTGCACATCCTCA-AAACTGCAGCAGACATCGTGCTGGCCAC  799

seq1  AGACGTGTGTGTGTGTGT-GTGTGT-GTGTG-TGCAATGATCACCTG-CC  843
      |||||||||||||||||| |||||| ||||| ||||||||||||||| ||
seq2  AGACGTGTGTGTGTGTGTGGTGTGTGGTGTGTTGCAATGATCACCTGCCC  849

seq1  TGTTATTTGTGCTTAAAGAGGTAGAGGGCTGATACCTG--TCCCCAGGTC  891
      |||||||||||||| |||| ||||||||||||||||||  |||||| |||
seq2  TGTTATTTGTGCTT-AAGAAGTAGAGGGCTGATACCTGGTTCCCCA-GTC  897

seq1  AAAACTCTTCTCAAGACTGGAAATTCCTG-GTGCCTCTTT--CCCCTTGA  938
      |||||||||||||  |||||||||||| | ||||||||||  ||||| ||
seq2  AAAACTCTTCTCAGAACTGGAAATTCCCGTGTGCCTCTTTTCCCCCTGGA  947

seq1  GCCTCCGGGTTTCTGCACCCAGGTTCTCCCTC-AGACTCCTGGCTATA  985
      || |||||||||||   | |  | || ||||| |||||||||||||||
seq2  GCTTCCGGGTTTCTTGTCACCTGGTC-CCCTCTAGACTCCTGGCTATA  994