BAC Information

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BAC

Clone NameB6Ng01-025J14
Chromosome1 (Build37)9 (Build37)
Map Location 164,482,897 - 164,483,69360,903,220 - 60,903,459
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik
Downstream geneVamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025J14.bB6Ng01-025J14.g
ACCDH856900DH856901
length800672
definitionDH856900|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J14, 5' end.DH856901|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(164,482,897 - 164,483,693)(60,903,220 - 60,903,459)
sequence
gaattcttttcttcagagcagtcaagaatctgtgttccctgagtggaggt
ccctaagggccagaagtcctcaggccattggtggcagttccaggatgtgt
ctcctcactgctgctgatagctttagctccataattttaaaaggttaacc
caaaatatcccctacaaggaacatgaaggactatttgtctcctgttttac
ttcctcggttcgctccctctctacccaaactaagaactgaagagccttag
atatgactttagctactttatcacacaaggctcctaatcagggagctgtg
gggcccttttagaaagtccttatgaggagtcaagcacaacactcatactt
gaaatactacgaaattgcagagaagcaaagcacacagcacccaccaacac
acggtcttatcagttcaccgagtatgttgaatgactcgtgagaactatca
cttatagtaggcacagttatgataatagatgagcaataagcaagaccgcc
gtgtgaaagacattaaacagctgcaaacgtcttcaatcagggtagtgatg
ctttaaaggaaaaatataacattttcatagcaaattcctgtgatacttct
ttctggcctaaggtaggccaaagaaggcttttcgtgggaaaggggtggaa
agaatctatactacgctttggtctatactacatactggactttatttcaa
agaaaaagccaaaggtggaggaggaagaagaggggaaggaggaagagaaa
gaagaaggataagaaggataactatgagaaggatggaattcacctctcta

gaattcctaaattgatacaagtattctcaagccctctatagaagaaaggc
cacaagtaaagctctctaaaccttcatgcgtcatgggctaattgcactag
ggaaaagaaagcaggcttggaacaaatttatgatcaaggaaaacattcgt
tctaggttaggaatcctgataactaaaaaccataactgggaatgggcaat
ttattgtaggcacaaggacagaaaataaataatagactagttaatctata
caagacttcaaaacaacaagacatagggcagatgatttgtctcttgacaa
aaccgtgctaatttatgacataaaaattattgctttaaacttataatgaa
cttatggtaggctaaaaacagataatgaatggttaggcactagtcttaat
ggaaagacatgtaaacaatttttctgtaactccttaactattgccttaag
cttactatgaacttatggaatgtaaaaatgcttttaaaactatacgatca
attattctgagaaggtataaaaactaagaacaacaataaactgtggtgaa
gccctttttctgcttcatccaatgtatgtgtgtgtgtgtgttgtctctgt
gcctgactctctctttctctctccctctctctctctccctcccccttcct
ctctctctctccctctctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164482897_164483693
seq2: B6Ng01-025J14.b_47_846

seq1  GAATTCTTTTCTTCAGAGCAGTCAAGAATCTGTGTTCCCTGAGTGGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTCAGAGCAGTCAAGAATCTGTGTTCCCTGAGTGGAGGT  50

seq1  CCCTAAGGGCCAGAAGTCCTCAGGCCATTGGTGGCAGTTCCAGGATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGGCCAGAAGTCCTCAGGCCATTGGTGGCAGTTCCAGGATGTGT  100

seq1  CTCCTCACTGCTGCTGATAGCTTTAGCTCCATAATTTTAAAAGGTTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACTGCTGCTGATAGCTTTAGCTCCATAATTTTAAAAGGTTAACC  150

seq1  CAAAATATCCCCTACAAGGAACATGAAGGACTATTTGTCTCCTGTTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCCCCTACAAGGAACATGAAGGACTATTTGTCTCCTGTTTTAC  200

seq1  TTCCTCGGTTCGCTCCCTCTCTACCCAAACTAAGAACTGAAGAGCCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGGTTCGCTCCCTCTCTACCCAAACTAAGAACTGAAGAGCCTTAG  250

seq1  ATATGACTTTAGCTACTTTATCACACAAGGCTCCTAATCAGGGAGCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTTTAGCTACTTTATCACACAAGGCTCCTAATCAGGGAGCTGTG  300

seq1  GGGCCCTTTTAGAAAGTCCTTATGAGGAGTCAAGCACAACACTCATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTTTTAGAAAGTCCTTATGAGGAGTCAAGCACAACACTCATACTT  350

seq1  GAAATACTACGAAATTGCAGAGAAGCAAAGCACACAGCACCCACCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTACGAAATTGCAGAGAAGCAAAGCACACAGCACCCACCAACAC  400

seq1  ACGGTCTTATCAGTTCACCGAGTATGTTGAATGACTCGTGAGAACTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCTTATCAGTTCACCGAGTATGTTGAATGACTCGTGAGAACTATCA  450

seq1  CTTATAGTAGGCACAGTTATGATAATAGATGAGCAATAAGCAAGACCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTAGGCACAGTTATGATAATAGATGAGCAATAAGCAAGACCGCC  500

seq1  GTGTGAAAGACATTAAACAGCTGCAAACGTCTTCAATCAGGGTAGTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAGACATTAAACAGCTGCAAACGTCTTCAATCAGGGTAGTGATG  550

seq1  CTTTAAAGGAAAAATATAACATTTTCATAGCAAATTCCTGTGATACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGAAAAATATAACATTTTCATAGCAAATTCCTGTGATACTTCT  600

seq1  TTCTGGCCTAAGGTAGGCCAAAGAAGGC-TTTCGTGGGAAAGGGGTGGAA  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTGGCCTAAGGTAGGCCAAAGAAGGCTTTTCGTGGGAAAGGGGTGGAA  650

seq1  AGAATCTATACTACGCTTTGGTCTATACTACATACTGGACTTTATTTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTATACTACGCTTTGGTCTATACTACATACTGGACTTTATTTCAA  700

seq1  AGAAAAAGCCAAAGGTGGAGGAGGAAGAAGAGGGGAAGGAGGAAGAG-AA  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAAAAGCCAAAGGTGGAGGAGGAAGAAGAGGGGAAGGAGGAAGAGAAA  750

seq1  GAAGAAGGAGAAGAAGGAGAACTATGAGAAGGAGGGAATTCACC-CTCTA  797
      ||||||||| |||||||| |||||||||||||| |||||||||| |||||
seq2  GAAGAAGGATAAGAAGGATAACTATGAGAAGGATGGAATTCACCTCTCTA  800

seq1: chr9_60903220_60903459
seq2: B6Ng01-025J14.g_650_737 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||| |||||||||||||  |||| ||| ||||||||||||| ||
seq2  GAGAGAGAGGGAGAGAGAGAGAGGAAGGGGGAGGGAGAGAGAGAGAGGGA  50

seq1  GAGAGAGAGAGAGAGGATATAGCTTACAGGAGGCCAGATGTGTTCCCGTG  100
      |||||| |||||||                  | |||            |
seq2  GAGAGAAAGAGAGA------------------GTCAG------------G  70

seq1  CAGTGCTTCAGAGATTTCAGCCCACAGTTGCTTGGTCCCATCACTGTGGA  150
      ||      ||||||   || | ||||                        
seq2  CA------CAGAGA---CAACACACAC-----------------------  88

seq1  TTTGTGGTGAGGTGAAGTATCATGGTGGAAACAGTGAAGCAGCTCAGCTT  200
                                                        
seq2  --------------------------------------------------  88

seq1  ACCTCGTGGCAGGCAGGATGCACAGAGAGACAACACACAC  240
                                              
seq2  ----------------------------------------  88