BAC Information

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BAC

Clone NameB6Ng01-025L13
Chromosome1 (Build37)
Map Location 186,487,408 - 186,628,901
singlet/doubletdoublet
Overlap geneLOC666714, Hlx1, Mosc1
Upstream geneEG666649, 1700056E22Rik, Dusp10, EG433387, EG629032
Downstream geneMosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025L13.bB6Ng01-025L13.g
ACCDH856973DH856974
length7291,139
definitionDH856973|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L13, 5' end.DH856974|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(186,628,376 - 186,628,901)(186,487,408 - 186,488,572)
sequence
gaattctctggattcttgaatgagagacagactggcaggcaggcaggcag
gcgtgtgtgcgtgtacacacacacacacacacacacacacacacacacac
aaacacacagcattaattttaacatgccttactagctcaaccactaggct
tctccctaactccacgtagctaacctactttcccctccaatactcctgag
ttatcatcaccttttaaaatctatgtttcacattctactaccccagaccc
aatgggggagtgacccctggggccactttcccggattcttacctgtcggt
gagctcttaagtctgacctttctgctccttcttggtgcatggtctgttct
atgtccctctcatagcagaattctttcttcttccccccgccccgccctag
cagttcttgcccaggaatcctaaaagtccggcctctttcaccctgcccag
ccgttggccactggctctttattgatcaatcaaaaactaattggggacag
ggaccctcagggtctgaacgaatagattcccatgtgattttgggagccaa
attaagacaaaacattagaaccaatctccagcagtctctgggaacttggg
ttctcatgctgattccaacggagccagctcctcagctgccgccttcccag
cctgctcagttcttctgaaggcattcaaacctacctcccttcaccctcta
cacgtgccttttggggtagggagacacag
gaattcaagaaagctgcccaaatagaatccccagagaagaagcctgcctc
agaagaaagatgacccttagataaacaaccataaacagatttcagtatca
tcattagggcaacaaatcacccttcaaaaccgccagctgacagctccacg
atccagcactgatgggaaagcaaacgctgccggggtggaataattgtggg
aaatatggccggattagatgtcacccgtgagcttacattctatcgtaatt
taaacagtcattggctctcctgatccctctttatccagctatgcaatact
taacattttatggctacccccagttgctcttcctcagccctccctcctgg
actaggctatttgtttagataaactggatttcctgggtgtgatttgcaga
aatgagccatgtgtatgactgccttcccaccaggctcctgctgggtttta
aagcattctgctttgttagatgagtttcagtgacgatttgactagcaact
caactgcaccaggagaaaaccagccagttgtcgctcgtgtgctggctcaa
tcagacagaagtaactgagtccattgccacactgcataatgagccctttt
ctgcagcaagcacaataaaacaccacacaacaaccctagtatctgaatga
gagtcagagatgagctccggagagggacccaaacacaggccacacccagt
agtcccgggaaagcacgccacttccccacagctattcacagcccactctt
ctaactggctggctttatctatgaaattccactttcatattttcacacgg
atgattcttcctgacgctctaccactttcttttgtgttttcctcatctgt
tgtgtgagacagccgcacaggagaaaaacatgagtcctataaattaattc
cacactgtctcatctgtatcgtgagcaaagagagggggccattctgtatt
tgccttggaagtgtatccattgttggaccctttcatggcatccgatggca
gcgcagaaaaattggcttgtgttcttctagaaccacaaagctatctgtga
gcaggttttccaagataaatgtactagctacatgtggattttggcttctg
actgttcattcctgtgcaggggggtagctcatcctatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_186628376_186628901
seq2: B6Ng01-025L13.b_234_760 (reverse)

seq1  CTGTGTCTCCCTA-CCCAAAAGGCACGTGTAGAGGGTGAAGGGAGGTAGG  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCCCTACCCCAAAAGGCACGTGTAGAGGGTGAAGGGAGGTAGG  50

seq1  TTTGAATGCCTTCAGAAGAACTGAGCAGGCTGGGAAGGCGGCAGCTGAGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGCCTTCAGAAGAACTGAGCAGGCTGGGAAGGCGGCAGCTGAGG  100

seq1  AGCTGGCTCCGTTGGAATCAGCATGAGAACCCAAGTTCCCAGAGACTGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTCCGTTGGAATCAGCATGAGAACCCAAGTTCCCAGAGACTGCT  150

seq1  GGAGATTGGTTCTAATGTTTTGTCTTAATTTGGCTCCCAAAATCACATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTGGTTCTAATGTTTTGTCTTAATTTGGCTCCCAAAATCACATGG  200

seq1  GAATCTATTCGTTCAGACCCTGAGGGTCCCTGTCCCCAATTAGTTTTTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATTCGTTCAGACCCTGAGGGTCCCTGTCCCCAATTAGTTTTTGA  250

seq1  TTGATCAATAAAGAGCCAGTGGCCAACGGCTGGGCAGGGTGAAAGAGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAATAAAGAGCCAGTGGCCAACGGCTGGGCAGGGTGAAAGAGGCC  300

seq1  GGACTTTTAGGATTCCTGGGCAAGAACTGCTAGGGCGGGGCGGGGGGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTAGGATTCCTGGGCAAGAACTGCTAGGGCGGGGCGGGGGGAAG  350

seq1  AAGAAAGAATTCTGCTATGAGAGGGACATAGAACAGACCATGCACCAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAATTCTGCTATGAGAGGGACATAGAACAGACCATGCACCAAGA  400

seq1  AGGAGCAGAAAGGTCAGACTTAAGAGCTCACCGACAGGTAAGAATCCGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGAAAGGTCAGACTTAAGAGCTCACCGACAGGTAAGAATCCGGG  450

seq1  AAAGTGGCCCCAGGGGTCACTCCCCCATTGGGTCTGGGGTAGTAGAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCCCCAGGGGTCACTCCCCCATTGGGTCTGGGGTAGTAGAATGT  500

seq1  GAAACATAGATTTTAAAAGGTGATGAT  526
      |||||||||||||||||||||||||||
seq2  GAAACATAGATTTTAAAAGGTGATGAT  527

seq1: chr1_186487408_186488572
seq2: B6Ng01-025L13.g_70_1208

seq1  GAATTCAAGAAAGCTGCCCAAATAGAATCCCCAGAGAAGAAGCCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAGCTGCCCAAATAGAATCCCCAGAGAAGAAGCCTGCCTC  50

seq1  AGAAGAAAGATGACCCTTAGATAAACAACCATAAACAGATTTCAGTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGATGACCCTTAGATAAACAACCATAAACAGATTTCAGTATCA  100

seq1  TCATTAGGGCAACAAATCACCCTTCAAAACCGCCAGCTGACAGCTCCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGGCAACAAATCACCCTTCAAAACCGCCAGCTGACAGCTCCACG  150

seq1  ATCCAGCACTGATGGGAAAGCAAACGCTGCCGGGGTGGAATAATTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCACTGATGGGAAAGCAAACGCTGCCGGGGTGGAATAATTGTGGG  200

seq1  AAATATGGCCGGATTAGATGTCACCCGTGAGCTTACATTCTATCGTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGCCGGATTAGATGTCACCCGTGAGCTTACATTCTATCGTAATT  250

seq1  TAAACAGTCATTGGCTCTCCTGATCCCTCTTTATCCAGCTATGCAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTCATTGGCTCTCCTGATCCCTCTTTATCCAGCTATGCAATACT  300

seq1  TAACATTTTATGGCTACCCCCAGTTGCTCTTCCTCAGCCCTCCCTCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTATGGCTACCCCCAGTTGCTCTTCCTCAGCCCTCCCTCCTGG  350

seq1  ACTAGGCTATTTGTTTAGATAAACTGGATTTCCTGGGTGTGATTTGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTATTTGTTTAGATAAACTGGATTTCCTGGGTGTGATTTGCAGA  400

seq1  AATGAGCCATGTGTATGACTGCCTTCCCACCAGGCTCCTGCTGGGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCATGTGTATGACTGCCTTCCCACCAGGCTCCTGCTGGGTTTTA  450

seq1  AAGCATTCTGCTTTGTTAGATGAGTTTCAGTGACGATTTGACTAGCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCTGCTTTGTTAGATGAGTTTCAGTGACGATTTGACTAGCAACT  500

seq1  CAACTGCACCAGGAGAAAACCAGCCAGTTGTCGCTCGTGTGCTGGCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCACCAGGAGAAAACCAGCCAGTTGTCGCTCGTGTGCTGGCTCAA  550

seq1  TCAGACAGAAGTAACTGAGTCCATTGCCACACTGCATAATGAGCCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGAAGTAACTGAGTCCATTGCCACACTGCATAATGAGCCCTTTT  600

seq1  CTGCAGCAAGCACAATAAAACACCACACAACAACCCTAGTATCTGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCAAGCACAATAAAACACCACACAACAACCCTAGTATCTGAATGA  650

seq1  GAGTCAGAGATGAGCTCCGGAGAGGGACCCAAACACAGGCCACACCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGATGAGCTCCGGAGAGGGACCCAAACACAGGCCACACCCAGT  700

seq1  AGTCCCGGGAAAGCACGCCACTTCCCCACAGCTATTCACAGCCCACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCGGGAAAGCACGCCACTTCCCCACAGCTATTCACAGCCCACTCTT  750

seq1  CTAACTGGCTGGCTTTATCTATGAAATTCCACTTTCATATTTTCACACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGCTGGCTTTATCTATGAAATTCCACTTTCATATTTTCACACGG  800

seq1  ATGATTCTTCCTGAACGCTCTACCACTTTCTTTTGTGTTTTCCTCATCTG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTCCTG-ACGCTCTACCACTTTCTTTTGTGTTTTCCTCATCTG  849

seq1  TTTGTGTGAGACAGCCGCACAAGAGAAAAACATGAGTCCTTATAAATTAA  900
       |||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  -TTGTGTGAGACAGCCGCACAGGAGAAAAACATGAGTCC-TATAAATTAA  897

seq1  TTCCACACTGTCTCATCTGTATCGTGAGCAAAAGAGAAGGTGGCCATTCT  950
      ||||||||||||||||||||||||||||| |||||| ||| |||||||||
seq2  TTCCACACTGTCTCATCTGTATCGTGAGC-AAAGAG-AGGGGGCCATTCT  945

seq1  GTAATTTGCCTTGGGAAGTGTATCCATTGGTGGGACCCTTTCATGGCATC  1000
      || ||||||||| ||||||||||||||| || ||||||||||||||||||
seq2  GT-ATTTGCCTT-GGAAGTGTATCCATT-GTTGGACCCTTTCATGGCATC  992

seq1  CGAGGGCAGCGGCAGAAAACATGGCTTGTGTTC-TCTAG-ACCACAAAAG  1048
      ||| |||||| ||||||||  |||||||||||| ||||| ||||||||  
seq2  CGATGGCAGC-GCAGAAAAATTGGCTTGTGTTCTTCTAGAACCACAAA--  1039

seq1  CCTATCTGTGGGGCAAGGGTTTTCCAAAAGATAAAATGTACCAAGCTAAC  1098
       |||||||| | |||  ||||||||  ||||| ||||||| | |||| ||
seq2  GCTATCTGT-GAGCA--GGTTTTCC--AAGAT-AAATGTA-CTAGCT-AC  1081

seq1  ACTGTGGATATTTGGCTTCTGTACTGGTTTCATTTCTCTTGCCAGGTGTG  1148
      | ||||||| ||||||||||| ||||  |||||| || |   |||| | |
seq2  A-TGTGGAT-TTTGGCTTCTG-ACTG--TTCATTCCTGT--GCAGG-GGG  1123

seq1  GTAGCTCAGTCCTATAG  1165
      |||||||| ||||||||
seq2  GTAGCTCA-TCCTATAG  1139