BAC Information

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BAC

Clone NameB6Ng01-025L16
Chromosome1 (Build37)
Map Location 65,595,176 - 65,700,425
singlet/doubletdoublet
Overlap geneLOC383520, EG667775
Upstream geneCreb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025L16.bB6Ng01-025L16.g
ACCDH856977DH856978
length1,078944
definitionDH856977|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L16, 5' end.DH856978|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,699,331 - 65,700,425)(65,595,176 - 65,596,121)
sequence
gaattcttctaattgcccattattatttacttttctcttgatttacaatg
aataaatcccctgagtagagaactccaatttgatcattccttcttattct
tttttaccttccttatttaaaaaaaaaaaaacaaacaaacaaaaaacctt
tttactattgtctggcttctgtgctttcttacactaaatattttattatt
caattcaccactttatacatgagtaatgaaagcaaaatgacactttcaga
taattttgcatatatgtgaaaattatattcaatgatgaatttaaatatgt
cataattctattgatcagaatcaaatttctgggaaacttaactatgataa
attaaccagaaaataatggatcttgttgtactcactgccagtcagaatta
ttgaaaaaaactgaggtaacaaagcttatactttgtttatcagtatgatt
tttcaaaactcttccacagatctcagccacaaggaaactacttgtgttct
gtaaagatgtgttacaaagaaagacactgaaaaatagccagatacttcaa
atagtgtttagtgacagaagttagagatagtagtaaccatagcctccttt
ctttcttactttatcttctgaatctatacttaattatatgtatataaatc
ttgtaaataaccctagctagggagtgcaaagggaatatactttcaatttt
atagcttctatgctaaaaaaatggaataaaatatacatcatccaaccaaa
ccattcttgtacttttcatacccatgaaaaggctacaacacaatatcaat
tactacagctccctcagtctggcactatgtaatgaaagatacttgtcatt
actgtagaaatctaatttattattagtgtcttttagtctttactgattaa
agaaagcagcaaagacgatagatagagcctaacaactgtagcccgagttt
gcaagttcatgagccaccaatggcagggattttttttctttttttttttt
ttttgactctcctcagagagtttgatacaattcataatctgttcatcata
gcaaattagaaattatcaccaatcatta
gaattcattgtcttctctgctttcttaccttgtcctgtatggtgctagta
tcaggtcactgtcaccttgaaataacacgtacaggtggattcttaggatc
ttccttgccatatgttaagctagttgctttccttagcattattatataag
tggaatgggagtgtctttaaaacccataagcgtccttcaattgggaggcc
tattgtttagcaaggtctgaaatctatatgaatatacttctatgttaata
gctattattaaggtgaatagttttaattatactacaggctgtctttccat
ttatttcagcccatcaactatttatttgcacatcttttgtacttagggca
cttggatgatggctagaaatgcttagacgaacaaaacagtgtctgctcag
cttctgtcgtgtgacagatggataagcagatggctctcacttgcaggaag
agaccaggttggggagggcacacggaaataagaacacacaggtgccaggc
ttcctccaaaattcagtccagattcctaactcacagttgctcatagctct
ccctcgtggtggccattacccctggtaaaagtgagaaatatgacatgttg
aacttccttattattattatgtattatttctatgttctgtattccctaga
tatcttggtaagttaactcctaagaaaagagatgtttttttttcagtaat
ttatcatttaaaggaaaattttagagttctaataattccttagaatagat
atctctggtagtttgtatcacatggcatgggaggcagatttctgatgctg
cttttcagagtgttatttgggggggggaggctgtgttttttcaatgtaaa
ccatggggttccagcagtgtgctcactttttccctgggagccccccccca
caaagcttctgatgaatttcatttctcagataccagacaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65699331_65700425
seq2: B6Ng01-025L16.b_45_1122 (reverse)

seq1  TAATGATTGTGGTGATAATTTCTAATTTGCTAATTGATGAACAGATTTTA  50
      |||||||  |||||||||||||||||||||||  |||||||||||||   
seq2  TAATGAT--TGGTGATAATTTCTAATTTGCTA--TGATGAACAGATT---  43

seq1  ATGAAATTTGTTATCAACACTCTCTGA-GAGAGTCAAAAAAAAAAAAAAA  99
      |||||  ||| |||||| ||||||||| ||||||||||||||||||||||
seq2  ATGAA--TTG-TATCAA-ACTCTCTGAGGAGAGTCAAAAAAAAAAAAAAA  89

seq1  AAGAAAAAAAAATCCCTTGCCATTGGTGGCTCATTGAACTTGCAAACTTC  149
      |   |||||||||||| |||||||||||||||| ||||||||||||| ||
seq2  A--GAAAAAAAATCCC-TGCCATTGGTGGCTCA-TGAACTTGCAAAC-TC  134

seq1  GGGCTACAGTTGTTAGGCTCTATCTATCGTCTTTTGCTGCTTTTCTTTAA  199
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  GGGCTACAGTTGTTAGGCTCTATCTATCGTC-TTTGCTGC-TTTCTTTAA  182

seq1  TCAGTAAAGACTAAAAGACACTAATAATAAATTAGATTTCTACAGTAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAGACTAAAAGACACTAATAATAAATTAGATTTCTACAGTAATG  232

seq1  ACAAGTATCTTTCATTACATAGTGCCAGACTGAGGGAGCTGTAGTAATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATCTTTCATTACATAGTGCCAGACTGAGGGAGCTGTAGTAATTG  282

seq1  ATATTGTGTTGTAGCCTTTTCATGGGTATGAAAAGTACAAGAATGGTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGTTGTAGCCTTTTCATGGGTATGAAAAGTACAAGAATGGTTTG  332

seq1  GTTGGATGATGTATATTTTATTCCATTTTTTTAGCATAGAAGCTATAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGATGTATATTTTATTCCATTTTTTTAGCATAGAAGCTATAAAA  382

seq1  TTGAAAGTATATTCCCTTTGCACTCCCTAGCTAGGGTTATTTACAAGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTATATTCCCTTTGCACTCCCTAGCTAGGGTTATTTACAAGATT  432

seq1  TATATACATATAATTAAGTATAGATTCAGAAGATAAAGTAAGAAAGAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATAATTAAGTATAGATTCAGAAGATAAAGTAAGAAAGAAAG  482

seq1  GAGGCTATGGTTACTACTATCTCTAACTTCTGTCACTAAACACTATTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATGGTTACTACTATCTCTAACTTCTGTCACTAAACACTATTTGA  532

seq1  AGTATCTGGCTATTTTTCAGTGTCTTTCTTTGTAACACATCTTTACAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGGCTATTTTTCAGTGTCTTTCTTTGTAACACATCTTTACAGAA  582

seq1  CACAAGTAGTTTCCTTGTGGCTGAGATCTGTGGAAGAGTTTTGAAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTAGTTTCCTTGTGGCTGAGATCTGTGGAAGAGTTTTGAAAAATC  632

seq1  ATACTGATAAACAAAGTATAAGCTTTGTTACCTCAGTTTTTTTCAATAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATAAACAAAGTATAAGCTTTGTTACCTCAGTTTTTTTCAATAAT  682

seq1  TCTGACTGGCAGTGAGTACAACAAGATCCATTATTTTCTGGTTAATTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGGCAGTGAGTACAACAAGATCCATTATTTTCTGGTTAATTTAT  732

seq1  CATAGTTAAGTTTCCCAGAAATTTGATTCTGATCAATAGAATTATGACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAAGTTTCCCAGAAATTTGATTCTGATCAATAGAATTATGACAT  782

seq1  ATTTAAATTCATCATTGAATATAATTTTCACATATATGCAAAATTATCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTCATCATTGAATATAATTTTCACATATATGCAAAATTATCTG  832

seq1  AAAGTGTCATTTTGCTTTCATTACTCATGTATAAAGTGGTGAATTGAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCATTTTGCTTTCATTACTCATGTATAAAGTGGTGAATTGAATA  882

seq1  ATAAAATATTTAGTGTAAGAAAGCACAGAAGCCAGACAATAGTAAAAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTTAGTGTAAGAAAGCACAGAAGCCAGACAATAGTAAAAAGG  932

seq1  TTTTTTGTTTGTTTGTTTTTTTTTTTTTAAATAAGGAAGGTAAAAAAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTGTTTTTTTTTTTTTAAATAAGGAAGGTAAAAAAGAA  982

seq1  TAAGAAGGAATGATCAAATTGGAGTTCTCTACTCAGGGGATTTATTCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGAATGATCAAATTGGAGTTCTCTACTCAGGGGATTTATTCATT  1032

seq1  GTAAATCAAGAGAAAAGTAAATAATAATGGGCAATTAGAAGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCAAGAGAAAAGTAAATAATAATGGGCAATTAGAAGAATTC  1078

seq1: chr1_65595176_65596121
seq2: B6Ng01-025L16.g_65_1008

seq1  GAATTCATTGTCTTCTCTGCTTTCTTACCTTGTCCTGTATGGTGCTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCTTCTCTGCTTTCTTACCTTGTCCTGTATGGTGCTAGTA  50

seq1  TCAGGTCACTGTCACCTTGAAATAACACGTACAGGTGGATTCTTAGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCACTGTCACCTTGAAATAACACGTACAGGTGGATTCTTAGGATC  100

seq1  TTCCTTGCCATATGTTAAGCTAGTTGCTTTCCTTAGCATTATTATATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCCATATGTTAAGCTAGTTGCTTTCCTTAGCATTATTATATAAG  150

seq1  TGGAATGGGAGTGTCTTTAAAACCCATAAGCGTCCTTCAATTGGGAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGGAGTGTCTTTAAAACCCATAAGCGTCCTTCAATTGGGAGGCC  200

seq1  TATTGTTTAGCAAGGTCTGAAATCTATATGAATATACTTCTATGTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTAGCAAGGTCTGAAATCTATATGAATATACTTCTATGTTAATA  250

seq1  GCTATTATTAAGGTGAATAGTTTTAATTATACTACAGGCTGTCTTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATTAAGGTGAATAGTTTTAATTATACTACAGGCTGTCTTTCCAT  300

seq1  TTATTTCAGCCCATCAACTATTTATTTGCACATCTTTTGTACTTAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGCCCATCAACTATTTATTTGCACATCTTTTGTACTTAGGGCA  350

seq1  CTTGGATGATGGCTAGAAATGCTTAGACGAACAAAACAGTGTCTGCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGATGGCTAGAAATGCTTAGACGAACAAAACAGTGTCTGCTCAG  400

seq1  CTTCTGTCGTGTGACAGATGGATAAGCAGATGGCTCTCACTTGCAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCGTGTGACAGATGGATAAGCAGATGGCTCTCACTTGCAGGAAG  450

seq1  AGACCAGGTTGGGGAGGGCACACGGAAATAAGAACACACAGGTGCCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTTGGGGAGGGCACACGGAAATAAGAACACACAGGTGCCAGGC  500

seq1  TTCCTCCAAAATTCAGTCCAGATTCCTAACTCACAGTTGCTCATAGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAAAATTCAGTCCAGATTCCTAACTCACAGTTGCTCATAGCTCT  550

seq1  CCCTCGTGGTGGCCATTACCCCTGGTAAAAGTGAGAAATATGACATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGTGGTGGCCATTACCCCTGGTAAAAGTGAGAAATATGACATGTTG  600

seq1  AACTTCCTTATTATTATTATGTATTATTTCTATGTTCTGTATTCCCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTTATTATTATTATGTATTATTTCTATGTTCTGTATTCCCTAGA  650

seq1  TATCTTGGTAAGTTAACTCCTAAGAAAAGAGATGTTTTTTTTTCAGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGTAAGTTAACTCCTAAGAAAAGAGATGTTTTTTTTTCAGTAAT  700

seq1  TTATCATTTAAAGGAAAATTTTAGAGTTCTAATAATTCCTTAGAATAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTAAAGGAAAATTTTAGAGTTCTAATAATTCCTTAGAATAGAT  750

seq1  ATCTCTGGTAGTTTGTATCACATGGCATGGGAGGCAGATTTCTGATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGTAGTTTGTATCACATGGCATGGGAGGCAGATTTCTGATGCTG  800

seq1  CTTTTCAGAGTGTTATTT-GGGGGGGGAGGCTGTGTTTTATCAATGTTAA  849
      |||||||||||||||||| |||||||||||||||||||| ||||||| ||
seq2  CTTTTCAGAGTGTTATTTGGGGGGGGGAGGCTGTGTTTTTTCAATGTAAA  850

seq1  TCATGGTGTTCTCAGCAGTGTGCTCACCTTTTCCCTGGGAGCCCCCCCCC  899
       ||||| |||| ||||||||||||||| ||||||||||||||||||||||
seq2  CCATGGGGTTC-CAGCAGTGTGCTCACTTTTTCCCTGGGAGCCCCCCCCC  899

seq1  AACAGAAGCTCCTGATGAAATTCATTTCTCAGATACCAGACAATAAA  946
       ||| ||||| |||||||| |||||||||||||||||||||||||||
seq2  -ACA-AAGCTTCTGATGAATTTCATTTCTCAGATACCAGACAATAAA  944