BAC Information

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BAC

Clone NameB6Ng01-025M16
ChromosomeY (Build37)1 (Build37)
Map Location 573,561 - 573,635111,094,086 - 111,095,211
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025M16.bB6Ng01-025M16.g
ACCDH857023DH857024
length2821,103
definitionDH857023|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M16, 5' end.DH857024|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,561 - 573,635)(111,094,086 - 111,095,211)
sequence
tttgtttagctctgaaccccatttttaatagggttatttgattttctgga
gtccatgttcttgagttcttcatacatattggatattagtctcctatctg
atcaatgggaggagaagcccttggtattgcagagatcatatcacccagta
cagtggaatgccagggccaggaagagggagtgggtgggtttgggagcagc
attgggggatggtatagggggctttggggatagcatttgaaatgtaaatg
aagaaaatatctaataaaaaatgcctttaaaa
gaattccccaccttttgttaataaaatagtatattttcttcatttatttt
tctttcacattacacatgttcatttcaatatatttaataaccagctatat
aagggtaatttatataacttcagtgattcctgaaaaggtccattgttact
ctcacacttaattataaggaggttcttactgacaggtccacacttaacct
gtgaaagtagacatgttcaacatctgtactgaaggataaggcatcagttg
atgaatacagaaaaaactataatgggattatttgtcataatcaggaaact
taatttttaaatgatcagtccttaatgggctattgttttgctgtagaaga
caataacacaagtaaaattggccaaaactttataaaataatggtaaaaac
tgatagcaaaaatttctagcaattactgtttaagttaagttacaatccag
tgcattaatgaattttaagatgtttaacaaagataacaaatattggaatc
agagtttactaagcaactctaaatctcaacactgtcattattaatgtggc
atataccaaaatgattcaggagagctcaaattgtggtgatgatgcaggag
acatggaatctaagaatgtgtgtcactgtcttagtgttactattgctatg
atggaatactaggaccaaaaacaccttcaggagaaaaatataattttgct
tttacttgcaagcactatggataattcaaggaagtcgggataggcattca
gatggggctggaactttgaggcagaagctgaggatgaagctatagaaagc
tgttgtttaatgagctactcctcgtggcttgttttgcctgctttcttata
gaagccaggactacagctcaggaatgacaccaacttcaagtgatggggtc
ctcctccaccattctctaattggaaaaaaacagtgcccacacattcccta
tagcacaaatttatgaagggattttcccaaatagatttcttcgctttgat
gatgctactggctcagtgataaaataagagcacagccactgtatgcagat
tgacggtgtactaagcgagaatgaacggatggtccctccttggaggcagc
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573561_573635
seq2: B6Ng01-025M16.b_254_332

seq1  GGGGGAGGATATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAG  50
      |||||| | |||||||| |||| |||||||||||||||||||||||||||
seq2  GGGGGATGGTATAGGGGGCTTTGGGGATAGCATTTGAAATGTAAATGAAG  50

seq1  AAAATAACTAATAAAAAA----TTTAAAA  75
      |||||| |||||||||||    |||||||
seq2  AAAATATCTAATAAAAAATGCCTTTAAAA  79

seq1: chr1_111094086_111095211
seq2: B6Ng01-025M16.g_68_1170

seq1  GAATTCCCCACCTTTTGTTAATAAAATAGTATATTTTCTTCATTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACCTTTTGTTAATAAAATAGTATATTTTCTTCATTTATTTT  50

seq1  TCTTTCACATTACACATGTTCATTTCAATATATTTAATAACCAGCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACATTACACATGTTCATTTCAATATATTTAATAACCAGCTATAT  100

seq1  AAGGGTAATTTATATAACTTCAGTGATTCCTGAAAAGGTCCATTGTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAATTTATATAACTTCAGTGATTCCTGAAAAGGTCCATTGTTACT  150

seq1  CTCACACTTAATTATAAGGAGGTTCTTACTGACAGGTCCACACTTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTTAATTATAAGGAGGTTCTTACTGACAGGTCCACACTTAACCT  200

seq1  GTGAAAGTAGACATGTTCAACATCTGTACTGAAGGATAAGGCATCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTAGACATGTTCAACATCTGTACTGAAGGATAAGGCATCAGTTG  250

seq1  ATGAATACAGAAAAAACTATAATGGGATTATTTGTCATAATCAGGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACAGAAAAAACTATAATGGGATTATTTGTCATAATCAGGAAACT  300

seq1  TAATTTTTAAATGATCAGTCCTTAATGGGCTATTGTTTTGCTGTAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAATGATCAGTCCTTAATGGGCTATTGTTTTGCTGTAGAAGA  350

seq1  CAATAACACAAGTAAAATTGGCCAAAACTTTATAAAATAATGGTAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACACAAGTAAAATTGGCCAAAACTTTATAAAATAATGGTAAAAAC  400

seq1  TGATAGCAAAAATTTCTAGCAATTACTGTTTAAGTTAAGTTACAATCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCAAAAATTTCTAGCAATTACTGTTTAAGTTAAGTTACAATCCAG  450

seq1  TGCATTAATGAATTTTAAGATGTTTAACAAAGATAACAAATATTGGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAATGAATTTTAAGATGTTTAACAAAGATAACAAATATTGGAATC  500

seq1  AGAGTTTACTAAGCAACTCTAAATCTCAACACTGTCATTATTAATGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTACTAAGCAACTCTAAATCTCAACACTGTCATTATTAATGTGGC  550

seq1  ATATACCAAAATGATTCAGGAGAGCTCAAATTGTGGTGATGATGCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCAAAATGATTCAGGAGAGCTCAAATTGTGGTGATGATGCAGGAG  600

seq1  ACATGGAATCTAAGAATGTGTGTCACTGTCTTAGTGTTACTATTGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAATCTAAGAATGTGTGTCACTGTCTTAGTGTTACTATTGCTATG  650

seq1  ATGGAATACTAGGACCAAAAACACCTTCAGGAGAAAAATATAATTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATACTAGGACCAAAAACACCTTCAGGAGAAAAATATAATTTTGCT  700

seq1  TTTACTTGCAAGCACTATGGATAATTCAAGGAAGTCGGGATAGGCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGCAAGCACTATGGATAATTCAAGGAAGTCGGGATAGGCATTCA  750

seq1  GATGGGGCTGGAACTTTGAGGCAGAAGCTGAGGATGAAGCTATAGAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCTGGAACTTTGAGGCAGAAGCTGAGGATGAAGCTATAGAAAGC  800

seq1  TGTTGTTTAATGAGCTACTCCTCGTGGCTTGTTTTGCCTGCTTTCTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTAATGAGCTACTCCTCGTGGCTTGTTTTGCCTGCTTTCTTATA  850

seq1  GAAGCCAGGACTACAAGCTCAGGAATGACACCAACTTCAAGTGATGGGGT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGACTAC-AGCTCAGGAATGACACCAACTTCAAGTGATGGGGT  899

seq1  CCTCCTCCACCATTCTCTAATTGGAAAAAAACAGTGCCCAACACAATTCC  950
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  CCTCCTCCACCATTCTCTAATTGGAAAAAAACAGTGCCC-ACAC-ATTCC  947

seq1  CTATAGCACAAATTTATGAAGGGATTTTCCCAAATTAGATTTCTTCGCCT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CTATAGCACAAATTTATGAAGGGATTTTCCCAAA-TAGATTTCTTCG-CT  995

seq1  TTGATGATGCTAACTTGGCTCAGGTTGATTAAAATTAGAGAGCACAGCCA  1050
      ||||||||||||   ||||||||  ||| ||||||   ||||||||||||
seq2  TTGATGATGCTA--CTGGCTCAG--TGA-TAAAAT--AAGAGCACAGCCA  1038

seq1  CTGTATGCAAGAATATGACGGTGTACTAAAGCAGAGATAGACGGGGAAGT  1100
      |||||||| |||   ||||||||||||||   ||| ||  ||||     |
seq2  CTGTATGC-AGA--TTGACGGTGTACTAAGCGAGA-ATGAACGG----AT  1080

seq1  GGTCCCCTCCCTTTGGAGGCAGCAAT  1126
      ||| ||||||  ||||||||||||||
seq2  GGT-CCCTCC--TTGGAGGCAGCAAT  1103