BAC Information

Click to search

BAC

Clone NameB6Ng01-025N21
Chromosome1 (Build37)
Map Location 147,261,062 - 147,403,004
singlet/doubletdoublet
Overlap genenone
Upstream geneRgs21, Rgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N21.bB6Ng01-025N21.g
ACCDH857081DH857082
length1,1481,037
definitionDH857081|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N21, 5' end.DH857082|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,261,062 - 147,262,224)(147,401,962 - 147,403,004)
sequence
gaattcctcttcagcatctatgatcccctagccatgtgtttttaaactga
tttacaatactgggcatgcaaaaatgttttagatttttttcagactatat
ggaatttgtaaagagtgcaataattatacaacactgaagcagcttctatt
atatttaatttgcaatttcaataatctatttaccctttcccccattgtat
cactaggtctactatgagaacaatatgcatgtcacatatatacatattta
catcagacattacacatttgtagctgtcataatgatgcttcatcagaaaa
tctattacttcattatatctttctatttttctttattgtgcattcattta
atgaaataaatattattttaataacttcattttatttcctacataacaat
aaaattgcaatacctcctaaaatgaccccattcaagtatgctatttaata
tttcatttcaactataaatttataatataatttatagatcacttgctgtt
gtaagaaacgattctcaagctgagtctgatcatgttttgaataggcttat
tcctgggtttgtagtaatcatcccaaacagttgttaagtatatgtgcata
tagaagccttggtttggaaggtgagccttaggaggtgatgaaaacctaaa
gcatgtctaaagagaagggtatctttgaaatcatttctatatttgttgat
ataaaatactccatgctactcagaagctcatcagcaggagggaagttgca
ttgttgcaagtcactggtcaaagtttaaaataagtaattgcttattagat
gtcacattttagttcttcctatagaaataatagtaatacttctctaaccc
ataatattacactagaatgtgtcaaagaaatatctgatatagagaagtga
ggcagattattaaacggagaaagtgcttcctcacattcagtttaagtgct
gtattaagaggtgaaactttgtagatgtaacaattacattttttactcat
tgagattactaattacatttatagctacaaatagactctgtataataata
aatccttggaatgaaataaagtttttgactagcaaagaagctctcttggg
cagagcgaaacccacaggcgcatctgggagaatgtttcatggaaaaaa
gaattcaattctacctgcaaaattacctccacctcagcacccagacaggg
ccttgttctattcccttctgcaaactcatttatgcaaatagaacactcaa
cttaaccctacattaaaaaataacactcagagtaagaaaagtgaaaagac
ctgcattttaactttaggaaatgaaaaacaaccttatactgggaagatga
ctcagtggtaaagactaggtcctgctttgtttttttgtttttgtttttgt
ttttgtttttgtttttgttttgtttttcttttcttttttgttttttgttt
tttgttttttgttttttgtttttttggtattttctttgttaacatttcaa
gtgttatcccctttccccatctgacccccccccaaaaaaaaaccctatcc
catcatccctccccctgcttttatgtgagtgtttcccacccaccttccca
ctcccacctctccaccctagcatttccctacactggggcgttgagccttc
aaaggaccaagggcctctcctcccattgatgcccaacaaggctatcctct
gctatatatctgctggagacatgggacacaccatatgtactccttggttg
gtggcttagtccttgggagcactagggggtctggttggttgattttgttg
ctcttcctatggggttgcaaaccccttcagctacttcagtcctttctcta
cctcctccttggggactcagtgctcagtgtactgttcttatagaagttct
gagaattcagattttcaacactcatgttcaggcactgacaaccacttctt
ttttttttttttttcacagctccaaatttttcttctggcttgtagacaac
tgcggtcacatgtacaaggcctgctcctacagaacacccattgtgtactc
aaaacattatgacagaatttgtggctgaagagagcacaaggatatagcac
gtactacttttgcctgggccagagtatgttccgagaaccacatgcagctc
acaatggccttcttccagtcagaagaggattgtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_147261062_147262224
seq2: B6Ng01-025N21.b_48_1195

seq1  GAATTCCTCTTCAGCATCTATGATCCCCTAGCCATGTGTTTTTAAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCAGCATCTATGATCCCCTAGCCATGTGTTTTTAAACTGA  50

seq1  TTTACAATACTGGGCATGCAAAAATGTTTTAGATTTTTTTCAGACTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATACTGGGCATGCAAAAATGTTTTAGATTTTTTTCAGACTATAT  100

seq1  GGAATTTGTAAAGAGTGCAATAATTATACAACACTGAAGCAGCTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGTAAAGAGTGCAATAATTATACAACACTGAAGCAGCTTCTATT  150

seq1  ATATTTAATTTGCAATTTCAATAATCTATTTACCCTTTCCCCCATTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATTTGCAATTTCAATAATCTATTTACCCTTTCCCCCATTGTAT  200

seq1  CACTAGGTCTACTATGAGAACAATATGCATGTCACATATATACATATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTCTACTATGAGAACAATATGCATGTCACATATATACATATTTA  250

seq1  CATCAGACATTACACATTTGTAGCTGTCATAATGATGCTTCATCAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACATTACACATTTGTAGCTGTCATAATGATGCTTCATCAGAAAA  300

seq1  TCTATTACTTCATTATATCTTTCTATTTTTCTTTATTGTGCATTCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACTTCATTATATCTTTCTATTTTTCTTTATTGTGCATTCATTTA  350

seq1  ATGAAATAAATATTATTTTAATAACTTCATTTTATTTCCTACATAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAATATTATTTTAATAACTTCATTTTATTTCCTACATAACAAT  400

seq1  AAAATTGCAATACCTCCTAAAATGACCCCATTCAAGTATGCTATTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCAATACCTCCTAAAATGACCCCATTCAAGTATGCTATTTAATA  450

seq1  TTTCATTTCAACTATAAATTTATAATATAATTTATAGATCACTTGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCAACTATAAATTTATAATATAATTTATAGATCACTTGCTGTT  500

seq1  GTAAGAAACGATTCTCAAGCTGAGTCTGATCATGTTTTGAATAGGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACGATTCTCAAGCTGAGTCTGATCATGTTTTGAATAGGCTTAT  550

seq1  TCCTGGGTTTGTAGTAATCATCCCAAACAGTTGTTAAGTATATGTGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTTTGTAGTAATCATCCCAAACAGTTGTTAAGTATATGTGCATA  600

seq1  TAGAAGCCTTGGTTTGGAAGGTGAGCCTTAGGAGGTGATGAAAACCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCTTGGTTTGGAAGGTGAGCCTTAGGAGGTGATGAAAACCTAAA  650

seq1  GCATGTCTAAAGAGAAGGGTATCTTTGAAATCATTTCTATATTTGTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTAAAGAGAAGGGTATCTTTGAAATCATTTCTATATTTGTTGAT  700

seq1  ATAAAATACTCCATGCTACTCAGAAGCTCATCAGCAGGAGGGAAGTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATACTCCATGCTACTCAGAAGCTCATCAGCAGGAGGGAAGTTGCA  750

seq1  TTGTTGCAAGTCACTGGTCAAAGTTTAAAATAAGTAATTGCTTATTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCAAGTCACTGGTCAAAGTTTAAAATAAGTAATTGCTTATTAGAT  800

seq1  GTCACATTTTAGTTCTTCCTATAGAAATAATAGTAATACTTCTCTAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTTTAGTTCTTCCTATAGAAATAATAGTAATACTTCTCTAACCC  850

seq1  ATAATATTACACTAGAATGTGTCAAAGAAATATCTGATATAGAGAAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTACACTAGAATGTGTCAAAGAAATATCTGATATAGAGAAGTGA  900

seq1  GGCAGATTATTAAAGGGAGAAAGTGCTTCCTCACATTCAGTTTAAGTGCT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCAGATTATTAAACGGAGAAAGTGCTTCCTCACATTCAGTTTAAGTGCT  950

seq1  GTATTAAGAGGTGAAACTTTGTAGATGTTAACAATTACATTTTTTAACTC  1000
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  GTATTAAGAGGTGAAACTTTGTAGATG-TAACAATTACATTTTTT-ACTC  998

seq1  ATTGAGATTTACTAATTACATTTATAGCTACAAATAGACTTCTTTGTTTA  1050
      ||||||| ||||||||||||||||||||||||||||||   || |||   
seq2  ATTGAGA-TTACTAATTACATTTATAGCTACAAATAGA---CTCTGT---  1041

seq1  TTATTATTATATCTTTGAAATGAAATAAAGTTTTTTGACTAGCAAAAGAA  1100
       || || || ||| ||| |||||||||||| |||||||||||||||   |
seq2  ATAATAATAAATCCTTGGAATGAAATAAAG-TTTTTGACTAGCAAA--GA  1088

seq1  AGCTCTCTAGAGCAGAGCAGAACACCACAGACAGCAATCTGGGAAGATGT  1150
      |||||||| | ||||||| |||  |||||| | || ||||||||  ||||
seq2  AGCTCTCTTGGGCAGAGC-GAAACCCACAGGC-GC-ATCTGGGAGAATGT  1135

seq1  CTCATGGAAAAAA  1163
       ||||||||||||
seq2  TTCATGGAAAAAA  1148

seq1: chr1_147401962_147403004
seq2: B6Ng01-025N21.g_68_1104 (reverse)

seq1  TCAAACAAATCCTCTTACTGAACTGGAAGAAGAGCACATTGTGAGCTGCC  50
      |||||| ||||||||| ||| ||||||||||| || |||||||||||| |
seq2  TCAAAC-AATCCTCTT-CTG-ACTGGAAGAAG-GC-CATTGTGAGCTG-C  44

seq1  ATGTGGGTTCTCGGAACATAACTCTGGCCCCAGCAAAAGTAGTACGTGCT  100
      |||| |||||||||||||| ||||||||||  ||||||||||||||||||
seq2  ATGT-GGTTCTCGGAACAT-ACTCTGGCCCAGGCAAAAGTAGTACGTGCT  92

seq1  CTATCCTGCTGCTCTCTTCAGCCACAAATTTCTGTCATAATGTTTTGAGT  150
       ||||||  ||||||||||||||||||| |||||||||||||||||||||
seq2  ATATCCTTGTGCTCTCTTCAGCCACAAA-TTCTGTCATAATGTTTTGAGT  141

seq1  ACAC-ATGGGTG-TCTGTAGGAGCAGGCCTTGTACATGTGACCGCAGTTG  198
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACACAATGGGTGTTCTGTAGGAGCAGGCCTTGTACATGTGACCGCAGTTG  191

seq1  TCTACAAGCCAGAAG-AAAATTTGGAGCTGTGAAAAAAAAAAAAAAAAAG  247
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TCTACAAGCCAGAAGAAAAATTTGGAGCTGTG-AAAAAAAAAAAAAAAAG  240

seq1  AAGTGGTTGTCAGTGCCTGAACATGAGTGTTG-AAATCTGAATTCTCAGA  296
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGTGGTTGTCAGTGCCTGAACATGAGTGTTGAAAATCTGAATTCTCAGA  290

seq1  ACTTCTATAAGAACAGTACACTGAGCACTGAGTCCCCAAGGAGGAGGTAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATAAGAACAGTACACTGAGCACTGAGTCCCCAAGGAGGAGGTAG  340

seq1  AGAAAGGACTGAAGTAGCTGAAGGGGTTTGCAACCCCATAGGAAGAGCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGACTGAAGTAGCTGAAGGGGTTTGCAACCCCATAGGAAGAGCAA  390

seq1  CAAAATCAACCAACCAGACCCCCTAGTGCTCCCAAGGACTAAGCCACCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAACCAACCAGACCCCCTAGTGCTCCCAAGGACTAAGCCACCAA  440

seq1  CCAAGGAGTACATATGGTGTGTCCCATGTCTCCAGCAGATATATAGCAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGTACATATGGTGTGTCCCATGTCTCCAGCAGATATATAGCAGA  490

seq1  GGATAGCCTTGTTGGGCATCAATGGGAGGAGAGGCCCTTGGTCCTTTGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCTTGTTGGGCATCAATGGGAGGAGAGGCCCTTGGTCCTTTGAA  540

seq1  GGCTCAACGCCCCAGTGTAGGGAAATGCTAGGGTGGAGAGGTGGGAGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAACGCCCCAGTGTAGGGAAATGCTAGGGTGGAGAGGTGGGAGTGG  590

seq1  GAAGGTGGGTGGGAAACACTCACATAAAAGCAGGGGGAGGGATGATGGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGTGGGAAACACTCACATAAAAGCAGGGGGAGGGATGATGGGA  640

seq1  TAGGGTTTTTTTTTGGGGGGGGGTCAGATGGGGAAAGGGGATAACACTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTTTTTTTGGGGGGGGGTCAGATGGGGAAAGGGGATAACACTTG  690

seq1  AAATGTTAACAAAGAAAATACCAAAAAAACAAAAAACAAAAAACAAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAACAAAGAAAATACCAAAAAAACAAAAAACAAAAAACAAAAAA  740

seq1  CAAAAAACAAAAAAGAAAAGAAAAACAAAACAAAAACAAAAACAAAAACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAAAAAGAAAAGAAAAACAAAACAAAAACAAAAACAAAAACA  790

seq1  AAAACAAAAACAAAAAAACAAAGCAGGACCTAGTCTTTACCACTGAGTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAAAACAAAGCAGGACCTAGTCTTTACCACTGAGTCA  840

seq1  TCTTCCCAGTATAAGGTTGTTTTTCATTTCCTAAAGTTAAAATGCAGGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAGTATAAGGTTGTTTTTCATTTCCTAAAGTTAAAATGCAGGTC  890

seq1  TTTTCACTTTTCTTACTCTGAGTGTTATTTTTTAATGTAGGGTTAAGTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTTCTTACTCTGAGTGTTATTTTTTAATGTAGGGTTAAGTTG  940

seq1  AGTGTTCTATTTGCATAAATGAGTTTGCAGAAGGGAATAGAACAAGGCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTATTTGCATAAATGAGTTTGCAGAAGGGAATAGAACAAGGCCC  990

seq1  TGTCTGGGTGCTGAGGTGGAGGTAATTTTGCAGGTAGAATTGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTGCTGAGGTGGAGGTAATTTTGCAGGTAGAATTGAATTC  1037