BAC Information

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BAC

Clone NameB6Ng01-025O12
Chromosome1 (Build37)
Map Location 193,069,059 - 193,203,354
singlet/doubletdoublet
Overlap geneNenf, 2310028N02Rik, Ppp2r5a
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3
Downstream geneLOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025O12.bB6Ng01-025O12.g
ACCDH857104DH857105
length1,1741,083
definitionDH857104|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O12, 5' end.DH857105|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,069,059 - 193,070,235)(193,202,249 - 193,203,354)
sequence
gaattcttgtactaattattatttacttgaagtggcttcagatagctgaa
tcaaagaataataaagtagaatctttaaaaatttcttctttgttttctct
gagataaggtttgctgtgaagcccagggcaacctcaaactcaagagaaca
cccttgcttctatctcttgactgctgggattgcaggtatgatccacattt
caaagaaaacgaaagctttgttaagcccagtccccttgcttcatcattgg
ccccagagtccctgccagggagttcacgaatgaatgacatagcacagtgg
tacagtacagagcttggcactcattcgctgttatgttcattaagtattaa
taagtgaagctgtattatagtctggccatcaagacccttcatcagaggat
gctcaataagacgggctcaggagaaagtggggctggccaggcttgagaat
cccgcctaaaggttcaatcctacctctgttatcaggcagccagataatta
atctgtcatctccccagtctgactttcttgtgggactaaataaaaaagag
aaaagtaggaggccagctgcacaagagcattcatctttctgcctcctgac
agcagccacagtgtgatgagatgcctcactctctggatgctgtggagcac
tgtgcacttccaaaccctgaactaaaacaagcctgccctgcctcaggtcg
ctttttgccagaaaattaatcatagcaatgagaacagtaaactttaatag
aattctgagagcttctatgtacagcttcctttttctcaagagtggtttgg
aatctgattcacataaggtgtctttgtctctacaagcagtcttcagagtt
cttctctgtggcccaagatcactgagacctctgatcatatgcttctgcac
atggctgtttagtgctgtgcgacaactggttcccaaagcctggcctctct
caagaaggagtggggatcacttaacacacatatgtaacacgcttaccaca
tgcatgtcacaccatgcacacaggcattctttttcttaccagggactttt
gtctcctgagctgatgcacttagtcctccacatcaggcttgtcctcactt
gggagtgggtccatctgccgtaccagctcttccatggatctgtcaccact
ttgtaaccggcaagttggccggca
gaattcttatctttgacttgactataattttaacttgtttatagtaataa
ttagtacattttatctaagatatcatagcttccagatacaaagttataca
cttacatttgaaattttagaggatatgggaaattttcttgaagtaaatag
ctttctaaaactgacacaagaagaaacaaaaatttcagtaggtatgtgtc
tatttgattgagtctgaattaagaaagatcattactagaaaataaaattg
cagagcaatgtgccttatgaacataaatgaaaaatctttagtcaaatatt
ggcagattgaagtctaaaatatatggatagaaataatgtatatttaccat
gtaagatttgtgccagggacataagcctatctttttttgttttgttttgt
ttttgttttttgactaacaatcatttcttgaccttttgcccatgttctaa
tgtgaaactgactaactttggttcttgacaaagatataaagaatagagat
tgaagaaaagattgtcttcttagcaacagagccagaaaaactgattccac
atatagaagaatgggacctggtccatatctattaccttgcactgtaatcg
acttgggctggatcagaggccttcagttagtaagacttgactttgacact
gctggaagtaaagcacttcatgatagatcataggcaggaacccaacagcc
caggaaataattctgggaattggcataattagaattccatgaaagtgggg
agagataagtcttgcccatctactcatcagcctggagatttgcccaaata
tgtaaagagagctgcaatattaaacacacagaaattatccagttagtcca
tggactcgtggccaaatagatagttctcaatagaaaggaataaaacggcc
atagtactttaaattgttcaatatccttagccatcagaaatgcaaattaa
actgtttgagagccatctcacccctgcagatggctgacagaaaacaatgg
ccgcaatgctatctatcagctttggaaaggcatctatcactgctgtggga
gcacatttctgcagtcacatgaatcagtgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193069059_193070235
seq2: B6Ng01-025O12.b_46_1219

seq1  GAATTCTTGTACTAATTATTATTTACTTGAAGTGGCTTCAGATAGCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTACTAATTATTATTTACTTGAAGTGGCTTCAGATAGCTGAA  50

seq1  TCAAAGAATAATAAAGTAGAATCTTTAAAAATTTCTTCTTTGTTTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATAATAAAGTAGAATCTTTAAAAATTTCTTCTTTGTTTTCTCT  100

seq1  GAGATAAGGTTTGCTGTGAAGCCCAGGGCAACCTCAAACTCAAGAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGGTTTGCTGTGAAGCCCAGGGCAACCTCAAACTCAAGAGAACA  150

seq1  CCCTTGCTTCTATCTCTTGACTGCTGGGATTGCAGGTATGATCCACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTTCTATCTCTTGACTGCTGGGATTGCAGGTATGATCCACATTT  200

seq1  CAAAGAAAACGAAAGCTTTGTTAAGCCCAGTCCCCTTGCTTCATCATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAACGAAAGCTTTGTTAAGCCCAGTCCCCTTGCTTCATCATTGG  250

seq1  CCCCAGAGTCCCTGCCAGGGAGTTCACGAATGAATGACATAGCACAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGTCCCTGCCAGGGAGTTCACGAATGAATGACATAGCACAGTGG  300

seq1  TACAGTACAGAGCTTGGCACTCATTCGCTGTTATGTTCATTAAGTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTACAGAGCTTGGCACTCATTCGCTGTTATGTTCATTAAGTATTAA  350

seq1  TAAGTGAAGCTGTATTATAGTCTGGCCATCAAGACCCTTCATCAGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGCTGTATTATAGTCTGGCCATCAAGACCCTTCATCAGAGGAT  400

seq1  GCTCAATAAGACGGGCTCAGGAGAAAGTGGGGCTGGCCAGGCTTGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATAAGACGGGCTCAGGAGAAAGTGGGGCTGGCCAGGCTTGAGAAT  450

seq1  CCCGCCTAAAGGTTCAATCCTACCTCTGTTATCAGGCAGCCAGATAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTAAAGGTTCAATCCTACCTCTGTTATCAGGCAGCCAGATAATTA  500

seq1  ATCTGTCATCTCCCCAGTCTGACTTTCTTGTGGGACTAAATAAAAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCATCTCCCCAGTCTGACTTTCTTGTGGGACTAAATAAAAAAGAG  550

seq1  AAAAGTAGGAGGCCAGCTGCACAAGAGCATTCATCTTTCTGCCTCCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGGAGGCCAGCTGCACAAGAGCATTCATCTTTCTGCCTCCTGAC  600

seq1  AGCAGCCACAGTGTGATGAGATGCCTCACTCTCTGGATGCTGTGGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCACAGTGTGATGAGATGCCTCACTCTCTGGATGCTGTGGAGCAC  650

seq1  TGTGCACTTCCAAACCCTGAACTAAAACAAGCCTGCCCTGCCTCAGGTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTTCCAAACCCTGAACTAAAACAAGCCTGCCCTGCCTCAGGTCG  700

seq1  C-TTTTGCCAGAAAATTAATCATAGCAATGAGAACAGTAA--CTTAATAG  747
      | ||||||||||||||||||||||||||||||||||||||   |||||||
seq2  CTTTTTGCCAGAAAATTAATCATAGCAATGAGAACAGTAAACTTTAATAG  750

seq1  AATTCTGAGAGCTTCTATGTACAGCTTCCTTTTTCTCAAGAGTGGTTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGAGCTTCTATGTACAGCTTCCTTTTTCTCAAGAGTGGTTTGG  800

seq1  AATCTGATTCACATAAGGTGTC-TTGTCTCTACAAGCAGTCTTCAGAGTT  846
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATCTGATTCACATAAGGTGTCTTTGTCTCTACAAGCAGTCTTCAGAGTT  850

seq1  CTTCTCTGTGGCCCAAGATCACTGAGACCTCTGATCATATGCTTCTGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTGGCCCAAGATCACTGAGACCTCTGATCATATGCTTCTGCAC  900

seq1  ATGGCTGTTTAGTGCTGTGCGACAACTGTTCCCCAAAGCCTGGCCTCTCT  946
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  ATGGCTGTTTAGTGCTGTGCGACAACTGGTTCCCAAAGCCTGGCCTCTCT  950

seq1  CAAGAAGGAGTGGGAATCACTT-ACACACATATGT-ACACGCTTACCACA  994
      |||||||||||||| ||||||| |||||||||||| ||||||||||||||
seq2  CAAGAAGGAGTGGGGATCACTTAACACACATATGTAACACGCTTACCACA  1000

seq1  TGCATGTACACA-CATGCACACAGGCATTTCTTTTCATACCAGGGGACCT  1043
      ||||||| |||| ||||||||||||||||  ||||| ||||| ||||| |
seq2  TGCATGT-CACACCATGCACACAGGCATTCTTTTTCTTACCA-GGGACTT  1048

seq1  TTGTCT-CTGAGCTGATGTCACTAAGTCCT-CACATCTAGGCTTGTCCTC  1091
      |||||| ||||||||||| |||| |||||| |||||| ||||||||||||
seq2  TTGTCTCCTGAGCTGATG-CACTTAGTCCTCCACATC-AGGCTTGTCCTC  1096

seq1  ACTTGGGAAGTGTGTCACATCTGCCGTCACCAAGCTCATCCATGGGTCCT  1141
      ||||||| |||| ||| |||||||||| ||| ||||| ||||||| | ||
seq2  ACTTGGG-AGTGGGTC-CATCTGCCGT-ACC-AGCTCTTCCATGGAT-CT  1141

seq1  GTCACCCACTTGGAACTCTGGCAAGTTTGGCCGGCA  1177
      ||||||   ||| ||  | |||||| ||||||||||
seq2  GTCACCACTTTGTAA--CCGGCAAG-TTGGCCGGCA  1174

seq1: chr1_193202249_193203354
seq2: B6Ng01-025O12.g_69_1151 (reverse)

seq1  TCCACACTGATTTCCATGTGACTGCAGAAATGTGCCTTCCCACCAGCAGT  50
      ||||||||||||  |||||||||||||||||||||  ||||| |||||||
seq2  TCCACACTGATT--CATGTGACTGCAGAAATGTGC--TCCCA-CAGCAGT  45

seq1  GAATAAGGATGCCCTTTCCCAAAGCCCTGATAGATAGCATTGGCGGCCAT  100
      | |||  ||||||  || ||||||  ||||||||||||||| ||||||| 
seq2  G-ATA--GATGCC--TTTCCAAAG--CTGATAGATAGCATT-GCGGCCA-  86

seq1  TTGTTTTCTTGTCAGCCATTCTGGCAGGGGTGAGATGGGCTCTCAAAACA  150
      |||||||| ||||||||| ||| ||||||||||||| ||||||| |||||
seq2  TTGTTTTC-TGTCAGCCA-TCT-GCAGGGGTGAGAT-GGCTCTC-AAACA  131

seq1  GTTTTAATTTGCATTTTCCTGATGGCTAAGGATATTGAACAATTTTAAAG  200
      | ||||||||||||||  |||||||||||||||||||||||| |||||||
seq2  G-TTTAATTTGCATTT--CTGATGGCTAAGGATATTGAACAA-TTTAAAG  177

seq1  TACTATTGGCCGTTTTATTCC-TTCTATTGAGAACTATCTATTTGGCCAC  249
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTA-TGGCCGTTTTATTCCTTTCTATTGAGAACTATCTATTTGGCCAC  226

seq1  GAGTCCATGGACTAACTGGATAATTTCTGTGTGTTTAATATTGCAGCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATGGACTAACTGGATAATTTCTGTGTGTTTAATATTGCAGCTCT  276

seq1  CTTTACATATTTGGGCAAATCTCCAGGCTGATGAGTAGATGGGCAAGACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATATTTGGGCAAATCTCCAGGCTGATGAGTAGATGGGCAAGACT  326

seq1  TATCTCTCCCCACTTTCATGGAATTCTAATTATGCCAATTCCCAGAATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCCCCACTTTCATGGAATTCTAATTATGCCAATTCCCAGAATTA  376

seq1  TTTCCTGGGCTGTTGGGTTCCTGCCTATGATCTATCATGAAGTGCTTTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGGCTGTTGGGTTCCTGCCTATGATCTATCATGAAGTGCTTTAC  426

seq1  TTCCAGCAGTGTCAAAGTCAAGTCTTACTAACTGAAGGCCTCTGATCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAGTGTCAAAGTCAAGTCTTACTAACTGAAGGCCTCTGATCCAG  476

seq1  CCCAAGTCGATTACAGTGCAAGGTAATAGATATGGACCAGGTCCCATTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCGATTACAGTGCAAGGTAATAGATATGGACCAGGTCCCATTCT  526

seq1  TCTATATGTGGAATCAGTTTTTCTGGCTCTGTTGCTAAGAAGACAATCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGTGGAATCAGTTTTTCTGGCTCTGTTGCTAAGAAGACAATCTT  576

seq1  TTCTTCAATCTCTATTCTTTATATCTTTGTCAAGAACCAAAGTTAGTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATCTCTATTCTTTATATCTTTGTCAAGAACCAAAGTTAGTCAG  626

seq1  TTTCACATTAGAACATGGGCAAAAGGTCAAGAAATGATTGTTAGTCAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTAGAACATGGGCAAAAGGTCAAGAAATGATTGTTAGTCAAAA  676

seq1  AACAAAAACAAAACAAAACAAAAAAAGATAGGCTTATGTCCCTGGCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAACAAAACAAAAAAAGATAGGCTTATGTCCCTGGCACAA  726

seq1  ATCTTACATGGTAAATATACATTATTTCTATCCATATATTTTAGACTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACATGGTAAATATACATTATTTCTATCCATATATTTTAGACTTCA  776

seq1  ATCTGCCAATATTTGACTAAAGATTTTTCATTTATGTTCATAAGGCACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCAATATTTGACTAAAGATTTTTCATTTATGTTCATAAGGCACAT  826

seq1  TGCTCTGCAATTTTATTTTCTAGTAATGATCTTTCTTAATTCAGACTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCAATTTTATTTTCTAGTAATGATCTTTCTTAATTCAGACTCAA  876

seq1  TCAAATAGACACATACCTACTGAAATTTTTGTTTCTTCTTGTGTCAGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGACACATACCTACTGAAATTTTTGTTTCTTCTTGTGTCAGTTT  926

seq1  TAGAAAGCTATTTACTTCAAGAAAATTTCCCATATCCTCTAAAATTTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCTATTTACTTCAAGAAAATTTCCCATATCCTCTAAAATTTCAA  976

seq1  ATGTAAGTGTATAACTTTGTATCTGGAAGCTATGATATCTTAGATAAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTGTATAACTTTGTATCTGGAAGCTATGATATCTTAGATAAAAT  1026

seq1  GTACTAATTATTACTATAAACAAGTTAAAATTATAGTCAAGTCAAAGATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATTATTACTATAAACAAGTTAAAATTATAGTCAAGTCAAAGATA  1076

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1083