BAC Information

Click to search

BAC

Clone NameB6Ng01-026B19
Chromosome1 (Build37)
Map Location 167,951,275 - 168,100,127
singlet/doubletdoublet
Overlap geneLOC665409, Dusp27, Gpa33
Upstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
Downstream geneMael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026B19.bB6Ng01-026B19.g
ACCDH857250DH857251
length1,063927
definitionDH857250|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B19, 5' end.DH857251|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,951,275 - 167,952,340)(168,099,180 - 168,100,127)
sequence
gaattcacagaaatttattctacatgatcagatactgtgtatatatgaca
gtacttcagatgttagcacagagtagaagtatattattttgcttcatgac
atttttacttattcaatgttatttgtatagaatcagctgttgagttattg
gtcccttgaaattttctaatggttttaaatgaaaataaaattgtatctca
tatatgttaaagacagtgactctcacatagagaggccttggactcaagtg
attatttattccttcttcctcttctttcacaatgatggtttaagaaagtg
tagacactcatctcttgtgctgaaaaaaatgctacactgaaaatatttcc
tgactcttaaggaaggtttacacatcatttgattaagtagagaattaatc
aaaagtccttaaatgcttgtcttaaactatattttagcctccacaaccaa
catctatgtaggacaatgtatgaatctgtgctattaatttcatgtctaag
ttcttcaacagctcgcttcctagatgaagaaactgaagctcacagaggtt
gagtgaccaactgagattcacaggttaaaagccaattttcacatctgagt
ctgtacatttccctacagaactctgtagagttcagtgtaagatagtgctt
acactgtatcttgaaaggcttgcacaatgtgcacttgcttaaaaaacaca
cagtgcacgctgacaccattgcacacactagcaaggttttgctgagagga
cccagatatagctgtctcttgtgagactatgccggggactagcaaacaca
gaagtggatgctcacagtcaggtattggatggatcatagggcccccaatg
gaggagctagagaaagtacccaaggagctaaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtaccctggagctctgactctagc
tgcatatgtatcaaaagatggcctagtcgtcatcactggaagagaggccc
attggacttgcaaacttttatttcctcagtacagggccaaaagtgggagt
ggtgtgggtaggg
gaattctcagagactggaaggaggcgatggtggccgagaccaacagccaa
ttcatcttctccccatgtcaaggtcacactgactgacatcttgccaccca
ctgacatggttgttacatggtgactcatctgtggcctaagcagagtctct
gtggtcacctcaggaccaaagttgaaagaaaccactgagccccacgtagt
ggcgcatgcctttaattccagcattcaggaggcagaggcaggtggatttc
tgagttcgaggccagcctggtctacaaaatgagttacagggctgccaggg
ctatacagagaaaccctgtctcgaaaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagagagagagagagagagagagagagagagagagaga
gagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaaggaaggaaggaagaaagaaagaaagaaagacaaaccactg
gacgtttattgtgtgttccgtctcctctgctgactagtggcaaacagcac
cctgagggcgggatatacacccactagacagacgggggcctcagaggctg
cctcagcgggatccccaggatggatggaaggagagaaccaacccctgaaa
cttgtcctctaacctccacaatacacccacccaaatgaataaataaataa
caaaaagataaactggcgatggggaacttgcacgtgtaagaagcattgtc
agctgatttttcagtcatgacgattttacgtccatctctggagcagttcg
ttatcctcgtgaatcaagaatccactcacagcctggcaatcaggtaacgt
gcccacttgagatgagtgtgaaacacccatccagatcacagcagaagcta
gcatagtcgcagctccagtcagctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167951275_167952340
seq2: B6Ng01-026B19.b_44_1106

seq1  GAATTCACAGAAATTTATTCTACATGATCAGATACTGTGTATATATGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAATTTATTCTACATGATCAGATACTGTGTATATATGACA  50

seq1  GTACTTCAGATGTTAGCACAGAGTAGAAGTATATTATTTTGCTTCATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCAGATGTTAGCACAGAGTAGAAGTATATTATTTTGCTTCATGAC  100

seq1  ATTTTTACTTATTCAATGTTATTTGTATAGAATCAGCTGTTGAGTTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTTATTCAATGTTATTTGTATAGAATCAGCTGTTGAGTTATTG  150

seq1  GTCCCTTGAAATTTTCTAATGGTTTTAAATGAAAATAAAATTGTATCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTGAAATTTTCTAATGGTTTTAAATGAAAATAAAATTGTATCTCA  200

seq1  TATATGTTAAAGACAGTGACTCTCACATAGAGAGGCCTTGGACTCAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTAAAGACAGTGACTCTCACATAGAGAGGCCTTGGACTCAAGTG  250

seq1  ATTATTTATTCCTTCTTCCTCTTCTTTCACAATGATGGTTTAAGAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTCCTTCTTCCTCTTCTTTCACAATGATGGTTTAAGAAAGTG  300

seq1  TAGACACTCATCTCTTGTGCTGAAAAAAATGCTACACTGAAAATATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTCATCTCTTGTGCTGAAAAAAATGCTACACTGAAAATATTTCC  350

seq1  TGACTCTTAAGGAAGGTTTACACATCATTTGATTAAGTAGAGAATTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTAAGGAAGGTTTACACATCATTTGATTAAGTAGAGAATTAATC  400

seq1  AAAAGTCCTTAAATGCTTGTCTTAAACTATATTTTAGCCTCCACAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCTTAAATGCTTGTCTTAAACTATATTTTAGCCTCCACAACCAA  450

seq1  CATCTATGTAGGACAATGTATGAATCTGTGCTATTAATTTCATGTCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGTAGGACAATGTATGAATCTGTGCTATTAATTTCATGTCTAAG  500

seq1  TTCTTCAACAGCTCGCTTCCTAGATGAAGAAACTGAAGCTCACAGAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAACAGCTCGCTTCCTAGATGAAGAAACTGAAGCTCACAGAGGTT  550

seq1  GAGTGACCAACTGAGATTCACAGGTTAAAAGCCAATTTTCACATCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCAACTGAGATTCACAGGTTAAAAGCCAATTTTCACATCTGAGT  600

seq1  CTGTACATTTCCCTACAGAACTCTGTAGAGTTCAGTGTAAGATAGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTTCCCTACAGAACTCTGTAGAGTTCAGTGTAAGATAGTGCTT  650

seq1  ACACTGTATCTTGAAAGGCTTGCACAATGTGCACTTGCTTAAAAAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTATCTTGAAAGGCTTGCACAATGTGCACTTGCTTAAAAAACACA  700

seq1  CAGTGCACGCTGACACCATTGCACACACTAGCAAGGTTTTGCTGAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCACGCTGACACCATTGCACACACTAGCAAGGTTTTGCTGAGAGGA  750

seq1  CCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGACTAGCAAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGACTAGCAAACACA  800

seq1  GAAGTGGATGCTCACAGTCAGGTATTGGATGGATCATAGGGCCCCCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGATGCTCACAGTCAGGTATTGGATGGATCATAGGGCCCCCAATG  850

seq1  GAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATA  900

seq1  GGTGGAACAACAATATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTGGAACAACAATATGAACTAACCAGTACCCTGGAGCTC-TGACTCTAG  949

seq1  CTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGG  1000
      ||||||||||||||||||||||||||||| | ||||||||| ||||||||
seq2  CTGCATATGTATCAAAAGATGGCCTAGTC-GTCATCACTGG-AAGAGAGG  997

seq1  CCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGCCAAAAAGTGG  1050
      |||||||||||||||||||||   | || |||||||||||| ||||||||
seq2  CCCATTGGACTTGCAAACTTTTATTTCCTCAGTACAGGGCC-AAAAGTGG  1046

seq1  GAGTGG-GTGGGTAGGG  1066
      |||||| ||||||||||
seq2  GAGTGGTGTGGGTAGGG  1063

seq1: chr1_168099180_168100127
seq2: B6Ng01-026B19.g_67_993 (reverse)

seq1  GTCAGCTTGACCTGGGAGCTGCGACTTATGGCTAGCTTTCTGCTGTGATC  50
      |||||| ||||   ||||||||||| ||| |||||| |||||||||||||
seq2  GTCAGC-TGAC--TGGAGCTGCGAC-TAT-GCTAGC-TTCTGCTGTGATC  44

seq1  TGGGATGGGTTGGTTTTCACACTCATCTCAAGTGGGCACGTTTACCCCTG  100
      | ||||||||    ||||||||||||||||||||||||||||    ||||
seq2  T-GGATGGGT---GTTTCACACTCATCTCAAGTGGGCACGTT---ACCTG  87

seq1  ATTGCCAGGCTGTTGAGTGGATTCTTGATTCAACGAGGATAAACGAAACT  150
      |||||||||||| |||||||||||||||||| |||||||| |||| ||||
seq2  ATTGCCAGGCTG-TGAGTGGATTCTTGATTC-ACGAGGAT-AACG-AACT  133

seq1  GCTCCAGAGATGGACGTAAAAATCGTCATGACTGAAAAATCAGCTGACAA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTCCAGAGATGGACGT-AAAATCGTCATGACTGAAAAATCAGCTGACAA  182

seq1  TGCTTTCTTACACGTGCAAGTTCCCCATCGCCAGTTTATCTTTTTGTTAT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGC-TTCTTACACGTGCAAGTTCCCCATCGCCAGTTTATCTTTTTGTTAT  231

seq1  TTATTTATTCATTTGGGTGGGTGTATTGTGGAGGTTAGAGGACAAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTCATTTGGGTGGGTGTATTGTGGAGGTTAGAGGACAAGTTTC  281

seq1  AGGGGTTGGTTCTCTCCTTCCATCCATCCTGGGGATCCCGCTGAGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGGTTCTCTCCTTCCATCCATCCTGGGGATCCCGCTGAGGCAGC  331

seq1  CTCTGAGGCCCCCGTCTGTCTAGTGGGTGTATATCCCGCCCTCAGGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGCCCCCGTCTGTCTAGTGGGTGTATATCCCGCCCTCAGGGTGC  381

seq1  TGTTTGCCACTAGTCAGCAGAGGAGACGGAACACACAATAAACGTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCACTAGTCAGCAGAGGAGACGGAACACACAATAAACGTCCAGT  431

seq1  GGTTTGTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTTCTTTCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTTCTTTCTTTCTT  481

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT--TCTCTCTC  529

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTC  579

seq1  TTTCTTTCTTTCTTTCTTTCTTTTTCGAGACAGGGTTTCTCTGTATAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTTTCGAGACAGGGTTTCTCTGTATAGCC  629

seq1  CTGGCAGCCCTGTAACTCATTTTGTAGACCAGGCTGGCCTCGAACTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGCCCTGTAACTCATTTTGTAGACCAGGCTGGCCTCGAACTCAGA  679

seq1  AATCCACCTGCCTCTGCCTCCTGAATGCTGGAATTAAAGGCATGCGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCTGCCTCTGCCTCCTGAATGCTGGAATTAAAGGCATGCGCCAC  729

seq1  TACGTGGGGCTCAGTGGTTTCTTTCAACTTTGGTCCTGAGGTGACCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGGGCTCAGTGGTTTCTTTCAACTTTGGTCCTGAGGTGACCACAG  779

seq1  AGACTCTGCTTAGGCCACAGATGAGTCACCATGTAACAACCATGTCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGCTTAGGCCACAGATGAGTCACCATGTAACAACCATGTCAGTG  829

seq1  GGTGGCAAGATGTCAGTCAGTGTGACCTTGACATGGGGAGAAGATGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAAGATGTCAGTCAGTGTGACCTTGACATGGGGAGAAGATGAATT  879

seq1  GGCTGTTGGTCTCGGCCACCATCGCCTCCTTCCAGTCTCTGAGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGGTCTCGGCCACCATCGCCTCCTTCCAGTCTCTGAGAATTC  927