BAC Information

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BAC

Clone NameB6Ng01-026D13
Chromosome1 (Build37)
Map Location 61,070,543 - 61,158,346
singlet/doubletdoublet
Overlap geneLOC433313
Upstream geneIca1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
Downstream geneLOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026D13.bB6Ng01-026D13.g
ACCDH857329DH857330
length1,061988
definitionDH857329|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D13, 5' end.DH857330|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,070,543 - 61,071,616)(61,157,351 - 61,158,346)
sequence
gaattcatcaagttattgtttatatgatcagaaaacatatctagtacaca
tgaagagaagaccaaaataggaaatatattcattttatgagacaatggat
tatcctagagaaagaaaagacacccaccaaatccaggaagtagagagtta
ctcaacatgggaagttcttcaaatatcaagggagatgtttataagtcatc
actagtgacttacttaatatttatttcagtaggtgtgcaaagatgaaact
atttgttgctgtttgtttgtgtgtgtttttgagactagtccccaattcac
tttgtaactgagtatgatcctgaatccctgattctgaggcctctgcctcg
aaagggctgagattagaagcatgccataatgtgcctggatgcaaaggtgg
atttggaagagttggtgagagaagtgaactggtatttaatggtaaacgtc
tataaagagatttaagggcctagatgaatcaaatagttttggtgtaggtt
ttactgttgactttaatttagattgaagaaattcttgggtagagaagaac
tattggttgtgagagggttatatgatatgtacaaaaaaaaagggagaaaa
cacatatagtgcctgaatggcagagatgggtgaggatatctgagatggaa
aaatgaaaataacatacaggaagaacaccttttcctatgagattcagata
agctcaggggtgaggaaaagcaacatttattattagtatatgaaacctac
ctatcccttcaacaataatgagaccaaataaaatgtcataattttctcct
aaacaaagctgaggctaatcaacagtagaagctgtttacttggggcgggt
aaatcctggttgatgagacacagcccattctgtccagacccgcttcaagt
aagctgctggaatgccgttagaagcaagcctttatttgtcatctcctggg
ggtggctccaagtcctcttttctagagcacctcatgtctactgatgtgag
caatatggaacaaatctgagggtcattcaatacacagctctcaaaacgga
gatttacattc
gaattcttagagatgtttgaaaaaaaaaatagacagctacccaggtgctt
caaaatggtctaattgtcagcgacaattgaaataatgatgatagttttct
cacagagctgagtttgttcaggttttgcccagtaacctctctacctcagt
ttcctattctgtaaaaccggagtaaaatgaaagcaacttcagctgctgtg
acaccaatgtgatctacatctaacttccccgatgcagaagagccagggct
ccatagatggtaggccctaacgtcaactttcactgcttaataagtcaaat
ggaccctgagctacttctcagggttgtaactgtaggtcccttcctaccaa
aggtctgatactagaagtaggactctgaatgcctcggcaccaagcatgta
aacaccacagagaggaagccaggaagcaccaccaccaaatcctaggagga
tgaacatgtgtaattattagtctctcagtgacatgtcatgtaatcatgtt
atttaactgagcttctcttatgtgttaaacactatgttctatagtaccct
atattcccaggtatatttaatcctcacaataattacttgaagtatccagt
atcctaatctgcaggggacaccaagtctcagagaagttagcagctttaag
atcaagaaattgaggcaagatctagacccaagtctccatgtctccaattg
ctaccaccacaaccaccaccaccaccaccaccaccaccaccaccaccacc
actaccaccatgctccattccatgcagagactatgtcttctgagaatttt
ggttttgttttgttttgttttgttttgtttttcgagacagggtttctctg
tgtagcctgggctgtctggaactcactctgaagatctgactggcttcaaa
ctcagaaattcgcctgcctctgcctcccaagtgctgggataaaggcgtgc
gcaccatgctggctgtctctggaaatttgatcctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61070543_61071616
seq2: B6Ng01-026D13.b_46_1106

seq1  GAATTCATCAAGTTATTGTTTATATGATCAGAAAACATATCTAGTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAGTTATTGTTTATATGATCAGAAAACATATCTAGTACACA  50

seq1  TGAAGAGAAGACCAAAATAGGAAATATATTCATTTTATGAGACAATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAAGACCAAAATAGGAAATATATTCATTTTATGAGACAATGGAT  100

seq1  TATCCTAGAGAAAGAAAAGACACCCACCAAATCCAGGAAGTAGAGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAGAGAAAGAAAAGACACCCACCAAATCCAGGAAGTAGAGAGTTA  150

seq1  CTCAACATGGGAAGTTCTTCAAATATCAAGGGAGATGTTTATAAGTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATGGGAAGTTCTTCAAATATCAAGGGAGATGTTTATAAGTCATC  200

seq1  ACTAGTGACTTACTTAATATTTATTTCAGTAGGTGTGCAAAGATGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGACTTACTTAATATTTATTTCAGTAGGTGTGCAAAGATGAAACT  250

seq1  ATTTGTTGCTGTTTGTTTGTGTGTGTTTTTGAGACTAGTCCCCAATTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGCTGTTTGTTTGTGTGTGTTTTTGAGACTAGTCCCCAATTCAC  300

seq1  TTTGTAACTGAGTATGATCCTGAATCCCTGATTCTGAGGCCTCTGCCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACTGAGTATGATCCTGAATCCCTGATTCTGAGGCCTCTGCCTCG  350

seq1  AAAGGGCTGAGATTAGAAGCATGCCATAATGTGCCTGGATGCAAAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTGAGATTAGAAGCATGCCATAATGTGCCTGGATGCAAAGGTGG  400

seq1  ATTTGGAAGAGTTGGTGAGAGAAGTGAACTGGTATTTAATGGTAAACGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAGAGTTGGTGAGAGAAGTGAACTGGTATTTAATGGTAAACGTC  450

seq1  TATAAAGAGATTTAAGGGCCTAGATGAATCAAATAGTTTTGGTGTAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAGATTTAAGGGCCTAGATGAATCAAATAGTTTTGGTGTAGGTT  500

seq1  TTACTGTTGACTTTAATTTAGATTGAAGAAATTCTTGGGTAGAGAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTGACTTTAATTTAGATTGAAGAAATTCTTGGGTAGAGAAGAAC  550

seq1  TATTGGTTGTGAGAGGGTTATATGATATGTACAAAAAAAAAGGGAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTGTGAGAGGGTTATATGATATGTACAAAAAAAAAGGGAGAAAA  600

seq1  CACATATAGTGCCTGAATGGCAGAGATGGGTGAGGATATCTGAGATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAGTGCCTGAATGGCAGAGATGGGTGAGGATATCTGAGATGGAA  650

seq1  AAATGAAAATAACATACAGGAAGAACACCTTTTCCTATGAGATTCAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATAACATACAGGAAGAACACCTTTTCCTATGAGATTCAGATA  700

seq1  AGCTCAGGGGTGAGGAAAAGCAACATTTATTATTAGTATATGAAACCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGGGTGAGGAAAAGCAACATTTATTATTAGTATATGAAACCTAC  750

seq1  CTATCCCTTCAACAATAATGAGACCAAATAAAATGTCATAATTTTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTTCAACAATAATGAGACCAAATAAAATGTCATAATTTTCTCCT  800

seq1  AAACAAAGCTGAGGCTAATCAACAGTAAGAAGCTGTTTACTTGGGGCGGG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAACAAAGCTGAGGCTAATCAACAGT-AGAAGCTGTTTACTTGGGGCGGG  849

seq1  TAAATCCTGGTTGATGAGACACAGGCCCATTCTGTCCAGACCCCGCTTCA  900
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TAAATCCTGGTTGATGAGACACA-GCCCATTCTGTCCAGA-CCCGCTTCA  897

seq1  CAGTAAGCTGCTGGAATGCCGTTAGAAGCAAGCCTTTATTTGTCATTCTC  950
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  -AGTAAGCTGCTGGAATGCCGTTAGAAGCAAGCCTTTATTTGTCA-TCTC  945

seq1  CTGGGGGTTGGCTCCAAGTCCCTCTTTTCTAAGAGCACCTCATGTCTACT  1000
      ||||||| ||||||||||| |||||||||| |||||||||||||||||||
seq2  CTGGGGG-TGGCTCCAAGT-CCTCTTTTCT-AGAGCACCTCATGTCTACT  992

seq1  GATGTGAGCCAATATGGAACATATCTGATGTGTCATTCAAATACACAGCT  1050
      |||||||| |||||||||||| |||||| | ||||||| |||||||||||
seq2  GATGTGAG-CAATATGGAACAAATCTGA-GGGTCATTC-AATACACAGCT  1039

seq1  CTCAAAAACGGAGATTTCACATTC  1074
      ||| ||||||||||||| ||||||
seq2  CTC-AAAACGGAGATTT-ACATTC  1061

seq1: chr1_61157351_61158346
seq2: B6Ng01-026D13.g_69_1056 (reverse)

seq1  GTAGAGGAATCAAAATTCCCAGAAGACAGCCAGGCATGGTGGCGCACGCC  50
      ||||||| ||| ||||| |||| ||||||||| ||||||| |||||||||
seq2  GTAGAGG-ATC-AAATTTCCAG-AGACAGCCA-GCATGGT-GCGCACGCC  45

seq1  TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTT-ATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAA  94

seq1  GCCAGTCAGATCTTCAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  150
      |||||||||||||||||||||||||||| |||||||  ||||||||||||
seq2  GCCAGTCAGATCTTCAGAGTGAGTTCCA-GACAGCCCAGGCTACACAGAG  143

seq1  AAACCCTGTCTCGAAAAACAAAACAAAACAAAACAAAACAAAACCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACCCTGTCTCGAAAAACAAAACAAAACAAAACAAAACAAAACC-AAAA  192

seq1  TTCTCAGAAGACATAGTCTCTGCATGGAATGGAGCATGGTGGTAGTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAGACATAGTCTCTGCATGGAATGGAGCATGGTGGTAGTGGTG  242

seq1  GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGTGGTGGTAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGTGGTGGTAGCAAT  292

seq1  TGGAGACATGGAGACTTGGGTCTAGATCTTGCCTCAATTTCTTGATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATGGAGACTTGGGTCTAGATCTTGCCTCAATTTCTTGATCTTA  342

seq1  AAGCTGCTAACTTCTCTGAGACTTGGTGTCCCCTGCAGATTAGGATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTAACTTCTCTGAGACTTGGTGTCCCCTGCAGATTAGGATACTG  392

seq1  GATACTTCAAGTAATTATTGTGAGGATTAAATATACCTGGGAATATAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCAAGTAATTATTGTGAGGATTAAATATACCTGGGAATATAGGG  442

seq1  TACTATAGAACATAGTGTTTAACACATAAGAGAAGCTCAGTTAAATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAGAACATAGTGTTTAACACATAAGAGAAGCTCAGTTAAATAACA  492

seq1  TGATTACATGACATGTCACTGAGAGACTAATAATTACACATGTTCATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACATGACATGTCACTGAGAGACTAATAATTACACATGTTCATCCT  542

seq1  CCTAGGATTTGGTGGTGGTGCTTCCTGGCTTCCTCTCTGTGGTGTTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATTTGGTGGTGGTGCTTCCTGGCTTCCTCTCTGTGGTGTTTACA  592

seq1  TGCTTGGTGCCGAGGCATTCAGAGTCCTACTTCTAGTATCAGACCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTGCCGAGGCATTCAGAGTCCTACTTCTAGTATCAGACCTTTGG  642

seq1  TAGGAAGGGACCTACAGTTACAACCCTGAGAAGTAGCTCAGGGTCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGACCTACAGTTACAACCCTGAGAAGTAGCTCAGGGTCCATTT  692

seq1  GACTTATTAAGCAGTGAAAGTTGACGTTAGGGCCTACCATCTATGGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTAAGCAGTGAAAGTTGACGTTAGGGCCTACCATCTATGGAGCC  742

seq1  CTGGCTCTTCTGCATCGGGGAAGTTAGATGTAGATCACATTGGTGTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTTCTGCATCGGGGAAGTTAGATGTAGATCACATTGGTGTCACA  792

seq1  GCAGCTGAAGTTGCTTTCATTTTACTCCGGTTTTACAGAATAGGAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGAAGTTGCTTTCATTTTACTCCGGTTTTACAGAATAGGAAACTG  842

seq1  AGGTAGAGAGGTTACTGGGCAAAACCTGAACAAACTCAGCTCTGTGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGAGGTTACTGGGCAAAACCTGAACAAACTCAGCTCTGTGAGAA  892

seq1  AACTATCATCATTATTTCAATTGTCGCTGACAATTAGACCATTTTGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCATCATTATTTCAATTGTCGCTGACAATTAGACCATTTTGAAGC  942

seq1  ACCTGGGTAGCTGTCTATTTTTTTTTTCAAACATCTCTAAGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTAGCTGTCTATTTTTTTTTTCAAACATCTCTAAGAATTC  988