BAC Information

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BAC

Clone NameB6Ng01-026I06
Chromosome1 (Build37)
Map Location 13,158,002 - 13,356,923
singlet/doubletdoublet
Overlap geneNcoa2
Upstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14
Downstream geneLOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026I06.bB6Ng01-026I06.g
ACCDH857536DH857537
length970778
definitionDH857536|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I06, 5' end.DH857537|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,158,002 - 13,158,977)(13,356,143 - 13,356,923)
sequence
gaattcaattccaattaccaatactgattaataacctaagtatgaccact
atattatattgcctactttttttttttttttttgtctaagagctagaatg
acttcactggcattcttttgggtataacctatcagggtgctagcatttaa
gatcatagatttcaattacacaggaaagtggtcaaacaagtgtgatcatg
cctgaatcccagcacttgaggctaaagccagcctgagctacagtgagctg
taggctattctgggctagagggagatggtttcaaaactgaacaaaagtat
ctgagtccacgtgaaactggcaacgacttctaatggattcgctcatgtgc
aaattataggagtgtgcttctgtgtagtctaccgtgtctttctaataaga
aaagtccactcattccttcgtgtgtgtgaacatccgaggaggacctgtgg
gtgccgattctctcttccccacgcgagtctaagggacagagctcggatca
ccaggcatgacaatgacaaacgcctttgccaactgagcctgtcaagttag
gaagttccctgttgaagtgacattttacttgagtcttttcagaggtagct
acttcagcagtgaacttagccactcctttccagaaaattcttcatgtact
cttaaaacaagaagaacattcctgtgtcacctatttgcaacaggacaaca
agctttctatgggagaggttcaggcaagagacgtggccctgaaagttcct
gagcaagggaagccttgcacactgtggatcagctgtgactgacagcccat
cgacagtgagacctgaagggtgtggggtggtggtcagtcatcattaaact
aaacagaaattcccacagcttcccgagttctcagagagtgtttcccatgc
ttctgtggtaagaacaggcttctgcgagctacactgttctttgaagaatg
tcctatggcaatgatgccct
gaattcttctgtctgctcaattgtttgcagggagcaggcgcgctttcagg
aaactcgctcctgtgctctgccaggatctgcacgcattgcttgtaatgtt
ccagctgccaggacccagggcctgttgtcagagatgaaaatgatgcatgg
gattttttgttggtcacttatgtccccaaaggcttcacttggagagtgag
tgagttccggaacgtgctgctcgctgccctctgcccattagaggccacaa
ctgaaggagggtaggcccttccagcagctccatcttgctcataggatctg
ctcgtgaacaaacttcctctgcctctgatgtcacccctgctttcgtaaga
acatttaataattatcttaaaatttctaattatattgttaatatgcttaa
gatgaaaaactttgagttgttttgaaaatgtaagttagaatattgaatcg
tgccaggcctggtggtgcagttctttcatgaaatctttagggaggtaaag
agaggggtgtctctgaccctgagacctagttcatgttcaggatagccatg
actaagtagagaggccttgtttcgaaaaccataacccaacacaaacaaca
aatgttgggttgtgtgtatgtatgcagttgtgtcttgatgatgttactca
gtgctggactgcttgcttagcatgttcaaggtcctgggttcaagctcaga
gagatgacccctccccaagtattgtgtttttccaggacccttcatcatgt
ctccagttattttagtccatctttagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_13158002_13158977
seq2: B6Ng01-026I06.b_43_1012

seq1  GAATTCAATTCCAATTACCAATACTGATTAATAACCTAAGTATGACCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCAATTACCAATACTGATTAATAACCTAAGTATGACCACT  50

seq1  ATATTATATTGCCTACTTTTTTTTTTTTTTTTTGTCTAAGAGCTAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATTGCCTACTTTTTTTTTTTTTTTTTGTCTAAGAGCTAGAATG  100

seq1  ACTTCACTGGCATTCTTTTGGGTATAACCTATCAGGGTGCTAGCATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTGGCATTCTTTTGGGTATAACCTATCAGGGTGCTAGCATTTAA  150

seq1  GATCATAGATTTCAATTACACAGGAAAGTGGTCAAACAAGTGTGATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAGATTTCAATTACACAGGAAAGTGGTCAAACAAGTGTGATCATG  200

seq1  CCTGAATCCCAGCACTTGAGGCTAAAGCCAGCCTGAGCTACAGTGAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCCCAGCACTTGAGGCTAAAGCCAGCCTGAGCTACAGTGAGCTG  250

seq1  TAGGCTATTCTGGGCTAGAGGGAGATGGTTTCAAAACTGAACAAAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTATTCTGGGCTAGAGGGAGATGGTTTCAAAACTGAACAAAAGTAT  300

seq1  CTGAGTCCACGTGAAACTGGCAACGACTTCTAATGGATTCGCTCATGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCACGTGAAACTGGCAACGACTTCTAATGGATTCGCTCATGTGC  350

seq1  AAATTATAGGAGTGTGCTTCTGTGTAGTCTACCGTGTCTTTCTAATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAGGAGTGTGCTTCTGTGTAGTCTACCGTGTCTTTCTAATAAGA  400

seq1  AAAGTCCACTCATTCCTTCGTGTGTGTGAACATCCGAGGAGGACCTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCACTCATTCCTTCGTGTGTGTGAACATCCGAGGAGGACCTGTGG  450

seq1  GTGCCGATTCTCTCTTCCCCACGCGAGTCTAAGGGACAGAGCTCGGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGATTCTCTCTTCCCCACGCGAGTCTAAGGGACAGAGCTCGGATCA  500

seq1  CCAGGCATGACAATGACAAACGCCTTTGCCAACTGAGCCTGTCAAGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATGACAATGACAAACGCCTTTGCCAACTGAGCCTGTCAAGTTAG  550

seq1  GAAGTTCCCTGTTGAAGTGACATTTTACTTGAGTCTTTTCAGAGGTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCCTGTTGAAGTGACATTTTACTTGAGTCTTTTCAGAGGTAGCT  600

seq1  ACTTCAGCAGTGAACTTAGCCACTCCTTTCCAGAAAATTCTTCATGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCAGTGAACTTAGCCACTCCTTTCCAGAAAATTCTTCATGTACT  650

seq1  CTTAAAACAAGAAGAACATTCCTGTGTCACCTATTTGCAACAGGACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACAAGAAGAACATTCCTGTGTCACCTATTTGCAACAGGACAACA  700

seq1  AGCTTTCTATGGGAGAGGTTCAGGCAAGAGACGTGGCCCTGAAAGTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTATGGGAGAGGTTCAGGCAAGAGACGTGGCCCTGAAAGTTCCT  750

seq1  GAGCAAGGGAAGCCTTGCACACTGTGGATCAGCTGTGACTGACAGGCCCA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGCAAGGGAAGCCTTGCACACTGTGGATCAGCTGTGACTGACA-GCCCA  799

seq1  TCGACAGTGAGACCTGAAGGGTGT-GGGTGGTGGTCAGTCATCATTAAAA  849
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  TCGACAGTGAGACCTGAAGGGTGTGGGGTGGTGGTCAGTCATCATT-AAA  848

seq1  CTAAAACAGAAATTCCCACAGCTTCCCGAGTCCTCAGAAGAGTGTTTCCT  899
      || |||||||||||||||||||||||||||| ||||| ||||||||||| 
seq2  CT-AAACAGAAATTCCCACAGCTTCCCGAGTTCTCAG-AGAGTGTTTCCC  896

seq1  ATGCTTCTGTGGTAAGAACAGGGCTTCAGCGAGCTACCACTGGTCTTTGA  949
      |||||||||||||||||||| |||||| |||||||| ||||| |||||||
seq2  ATGCTTCTGTGGTAAGAACA-GGCTTCTGCGAGCTA-CACTGTTCTTTGA  944

seq1  AGTAGTGTCCTATGGCAATGATGCCCT  976
      || | ||||||||||||||||||||||
seq2  AG-AATGTCCTATGGCAATGATGCCCT  970

seq1: chr1_13356143_13356923
seq2: B6Ng01-026I06.g_66_843 (reverse)

seq1  CTCTAAAGATGGCCTAAAATAACTGGAGACATGCTGAAGGGTCCTTGGAA  50
      |||||||||||| |||||||||||||||||||| |||||||||| |||||
seq2  CTCTAAAGATGGACTAAAATAACTGGAGACATGATGAAGGGTCC-TGGAA  49

seq1  ATACACAATTACATTGGGGAGGGGTCATCTCTCTGAGCTTGAACCCAGGA  100
      | |||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  AAACACAA-TAC-TTGGGGAGGGGTCATCTCTCTGAGCTTGAACCCAGGA  97

seq1  CCTTGAACATGCTAAGCAAGCAGTCCAGCACTGAGTAACATCATCAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACATGCTAAGCAAGCAGTCCAGCACTGAGTAACATCATCAAGAC  147

seq1  ACAACTGCATACATACACACAACCCAACATTTGTTGTTTGTGTTGGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCATACATACACACAACCCAACATTTGTTGTTTGTGTTGGGTTA  197

seq1  TGGTTTTCGAAACAAGGCCTCTCTACTTAGTCATGGCTATCCTGAACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCGAAACAAGGCCTCTCTACTTAGTCATGGCTATCCTGAACATG  247

seq1  AACTAGGTCTCAGGGTCAGAGACACCCCTCTCTTTACCTCCCTAAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTCTCAGGGTCAGAGACACCCCTCTCTTTACCTCCCTAAAGATT  297

seq1  TCATGAAAGAACTGCACCACCAGGCCTGGCACGATTCAATATTCTAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAGAACTGCACCACCAGGCCTGGCACGATTCAATATTCTAACTT  347

seq1  ACATTTTCAAAACAACTCAAAGTTTTTCATCTTAAGCATATTAACAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCAAAACAACTCAAAGTTTTTCATCTTAAGCATATTAACAATAT  397

seq1  AATTAGAAATTTTAAGATAATTATTAAATGTTCTTACGAAAGCAGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAATTTTAAGATAATTATTAAATGTTCTTACGAAAGCAGGGGTG  447

seq1  ACATCAGAGGCAGAGGAAGTTTGTTCACGAGCAGATCCTATGAGCAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAGGCAGAGGAAGTTTGTTCACGAGCAGATCCTATGAGCAAGAT  497

seq1  GGAGCTGCTGGAAGGGCCTACCCTCCTTCAGTTGTGGCCTCTAATGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCTGGAAGGGCCTACCCTCCTTCAGTTGTGGCCTCTAATGGGCA  547

seq1  GAGGGCAGCGAGCAGCACGTTCCGGAACTCACTCACTCTCCAAGTGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGCGAGCAGCACGTTCCGGAACTCACTCACTCTCCAAGTGAAGC  597

seq1  CTTTGGGGACATAAGTGACCAACAAAAAATCCCATGCATCATTTTCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGACATAAGTGACCAACAAAAAATCCCATGCATCATTTTCATCT  647

seq1  CTGACAACAGGCCCTGGGTCCTGGCAGCTGGAACATTACAAGCAATGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACAGGCCCTGGGTCCTGGCAGCTGGAACATTACAAGCAATGCGT  697

seq1  GCAGATCCTGGCAGAGCACAGGAGCGAGTTTCCTGAAAGCGCGCCTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCTGGCAGAGCACAGGAGCGAGTTTCCTGAAAGCGCGCCTGCTC  747

seq1  CCTGCAAACAATTGAGCAGACAGAAGAATTC  781
      |||||||||||||||||||||||||||||||
seq2  CCTGCAAACAATTGAGCAGACAGAAGAATTC  778