BAC Information

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BAC

Clone NameB6Ng01-026J10
Chromosome1 (Build37)
Map Location 57,842,292 - 57,972,137
singlet/doubletdoublet
Overlap gene2810022L02Rik
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream geneKctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J10.bB6Ng01-026J10.g
ACCDH857590DH857591
length1,053432
definitionDH857590|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J10, 5' end.DH857591|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,971,076 - 57,972,137)(57,842,292 - 57,842,729)
sequence
gaattccttaaaacagacatagttaatctcaatagaatcccactggggct
tatttatcttcttggaacttttaaaaggacaagagaagcaaaatcctcca
agtctaatacctacgacaccaactgtttagctaggaacatacagatttcg
tcaatcagtattttcttgtcttttctaattgtgtcttaggttgttctctt
tctatgaaaagcactagtcgagaaaataactgcatttcagtttcactgta
aaaagataggacttagccttctcccctctttgaaagctacactatagaag
aggaaaggaaactgtgggtgtcagttgtcttggggcatctttacttcatc
tttcacactcatcgaagaaaacaaggcaaaatgaaacatttcaaaataaa
acaaagcaagacaaaagacattctctgtctcacgcacaagatagagccaa
tcacttttacattctgctagcttttcttccaaaaacattttttgtttttt
gttttgttttgaaaacaaattgggatgggggaagttatccgtgcagatgc
catcatcgatgctgaaatgaggaaatcaatgctgagcatgagttctaagt
gtggtacccaaaggatcaggagtgccctcacttctaacctgaggcatggg
tcttgctacctggcagggtttagacttctggctctcaggggaagagggaa
gagagagagaacgcatcctgggatcctctagacaagcatgcaccattatc
tcagttaacagcctgctctaagtagctccaccctgggaaggcaagtaaac
actagagtctaaaaaggagacctttctaccctcttgactacagatgaatg
gtggttcaaatgtctagtttatagtggattttctgatttgagaggcatgt
atcccactctattgattagcgattgttggagtgaggcttggggggatttc
gtcctctcaaatactgagatcttgcagcttctgttcccttctttagtgta
atttctagcctcttcaagatttaaatttaccttcttgatgaaccctttct
aaa
ctggttggacatttggaagtcttggtttgatgcctggctgtatgggccag
atcaaggcatttagccttcctgaactttgattccgtcatgcactaagcaa
aattagcaatatctacctttatgttataatttcattatgactatgtaaga
caatagaaagtcccagggcctcaaacctgcatgctatgaaagtggtgact
aaggcttgcttcttgacttgaacagttttatagcccttcccagaggctga
caaaaagagaataagaacacagaccaaggagcccaagttctgccctattc
gttggtcaagaaaggaccagaaggaagctgccatcacatcttagttaagt
ccaattctggataatagtttacatttgtgaaaattctcatctggaattgt
gggtgcagtgtgaagccatggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57971076_57972137
seq2: B6Ng01-026J10.b_45_1097 (reverse)

seq1  TTTAGGAAAGGGTTCATCAAGGAGGTGAAATTTAAATCTTGAAGGAAGAC  50
      |||| |||||||||||||||| |||| |||||||||||||||||  || |
seq2  TTTA-GAAAGGGTTCATCAAGAAGGT-AAATTTAAATCTTGAAG--AGGC  46

seq1  TAGAAATTTACCACA-TAAAGAAGGGAACAGAAGCCTGCAAGATCACAGT  99
      ||||||||    ||| |||||||||||||||||| |||||||||| ||||
seq2  TAGAAATT----ACACTAAAGAAGGGAACAGAAG-CTGCAAGATCTCAGT  91

seq1  ATTTGAGAGGACGAAATTCCCCCAAGCCTCACTCCACCAATCGCTAATCA  149
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  ATTTGAGAGGACGAAATCCCCCCAAGCCTCACTCCAACAATCGCTAATCA  141

seq1  ATAGAGTGGGATACATGCCTCTCAAATCAGAAAATCCACTTATAAACTAG  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAGAGTGGGATACATGCCTCTCAAATCAGAAAATCCAC-TATAAACTAG  190

seq1  ACATTTGAACCACCATTCATCTGTAGTCAAGAGGGTAGGAAGGTCTCCTT  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATTTGAACCACCATTCATCTGTAGTCAAGAGGGTAGAAAGGTCTCCTT  240

seq1  TTTAGACTCTAGTGTTTACTTGCCTTCCCAGGGTGGAGCTACTTAGAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTCTAGTGTTTACTTGCCTTCCCAGGGTGGAGCTACTTAGAGCA  290

seq1  GGCTGTTAACTGAGATAATGGTGCATGCTTGTCTAGAGGATCCCAGGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTAACTGAGATAATGGTGCATGCTTGTCTAGAGGATCCCAGGATG  340

seq1  CGTTCTCTCTCTCTTCCCTCTTCCCCTGAGAGCCAGAAGTCTAAACCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCTCTCTCTTCCCTCTTCCCCTGAGAGCCAGAAGTCTAAACCCTG  390

seq1  CCAGGTAGCAAGACCCATGCCTCAGGTTAGAAGTGAGGGCACTCCTGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGCAAGACCCATGCCTCAGGTTAGAAGTGAGGGCACTCCTGATC  440

seq1  CTTTGGGTACCACACTTAGAACTCATGCTCAGCATTGATTTCCTCATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTACCACACTTAGAACTCATGCTCAGCATTGATTTCCTCATTTC  490

seq1  AGCATCGATGATGGCATCTGCACGGATAACTTCCCCCATCCCAATTTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCGATGATGGCATCTGCACGGATAACTTCCCCCATCCCAATTTGTT  540

seq1  TTCAAAACAAAACAAAAAACAAAAAATGTTTTTGGAAGAAAAGCTAGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACAAAACAAAAAACAAAAAATGTTTTTGGAAGAAAAGCTAGCAG  590

seq1  AATGTAAAAGTGATTGGCTCTATCTTGTGCGTGAGACAGAGAATGTCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAGTGATTGGCTCTATCTTGTGCGTGAGACAGAGAATGTCTTT  640

seq1  TGTCTTGCTTTGTTTTATTTTGAAATGTTTCATTTTGCCTTGTTTTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCTTTGTTTTATTTTGAAATGTTTCATTTTGCCTTGTTTTCTTC  690

seq1  GATGAGTGTGAAAGATGAAGTAAAGATGCCCCAAGACAACTGACACCCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGTGAAAGATGAAGTAAAGATGCCCCAAGACAACTGACACCCAC  740

seq1  AGTTTCCTTTCCTCTTCTATAGTGTAGCTTTCAAAGAGGGGAGAAGGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTTCCTCTTCTATAGTGTAGCTTTCAAAGAGGGGAGAAGGCTA  790

seq1  AGTCCTATCTTTTTACAGTGAAACTGAAATGCAGTTATTTTCTCGACTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTATCTTTTTACAGTGAAACTGAAATGCAGTTATTTTCTCGACTAG  840

seq1  TGCTTTTCATAGAAAGAGAACAACCTAAGACACAATTAGAAAAGACAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCATAGAAAGAGAACAACCTAAGACACAATTAGAAAAGACAAGA  890

seq1  AAATACTGATTGACGAAATCTGTATGTTCCTAGCTAAACAGTTGGTGTCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGATTGACGAAATCTGTATGTTCCTAGCTAAACAGTTGGTGTCG  940

seq1  TAGGTATTAGACTTGGAGGATTTTGCTTCTCTTGTCCTTTTAAAAGTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTAGACTTGGAGGATTTTGCTTCTCTTGTCCTTTTAAAAGTTCC  990

seq1  AAGAAGATAAATAAGCCCCAGTGGGATTCTATTGAGATTAACTATGTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATAAATAAGCCCCAGTGGGATTCTATTGAGATTAACTATGTCTG  1040

seq1  TTTTAAGGAATTC  1062
      |||||||||||||
seq2  TTTTAAGGAATTC  1053

seq1: chr1_57842292_57842729
seq2: B6Ng01-026J10.g_69_506

seq1  GAATTCCTGGTTGGACATTTGGAAGTCTTGGTTTGATGCCTGGCTGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTTGGACATTTGGAAGTCTTGGTTTGATGCCTGGCTGTATG  50

seq1  GGCCAGATCAAGGCATTTAGCCTTCCTGAACTTTGATTCCGTCATGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATCAAGGCATTTAGCCTTCCTGAACTTTGATTCCGTCATGCACT  100

seq1  AAGCAAAATTAGCAATATCTACCTTTATGTTATAATTTCATTATGACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATTAGCAATATCTACCTTTATGTTATAATTTCATTATGACTAT  150

seq1  GTAAGACAATAGAAAGTCCCAGGGCCTCAAACCTGCATGCTATGAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACAATAGAAAGTCCCAGGGCCTCAAACCTGCATGCTATGAAAGTG  200

seq1  GTGACTAAGGCTTGCTTCTTGACTTGAACAGTTTTATAGCCCTTCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAGGCTTGCTTCTTGACTTGAACAGTTTTATAGCCCTTCCCAGA  250

seq1  GGCTGACAAAAAGAGAATAAGAACACAGACCAAGGAGCCCAAGTTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACAAAAAGAGAATAAGAACACAGACCAAGGAGCCCAAGTTCTGCC  300

seq1  CTATTCGTTGGTCAAGAAAGGACCAGAAGGAAGCTGCCATCACATCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCGTTGGTCAAGAAAGGACCAGAAGGAAGCTGCCATCACATCTTAG  350

seq1  TTAAGTCCAATTCTGGATAATAGTTTACATTTGTGAAAATTCTCATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCAATTCTGGATAATAGTTTACATTTGTGAAAATTCTCATCTGG  400

seq1  AATTGTGGGTGCAGTGTGAAGCCATGGGGGGGGGGGGG  438
      ||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGGTGCAGTGTGAAGCCATGGGGGGGGGGGGG  438