BAC Information

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BAC

Clone NameB6Ng01-027C02
Chromosome1 (Build37)
Map Location 51,472,466 - 51,604,807
singlet/doubletdoublet
Overlap geneObfc2a
Upstream geneTmeff2, Sdpr, LOC383504
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027C02.bB6Ng01-027C02.g
ACCDH857962DH857963
length992934
definitionDH857962|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C02, 5' end.DH857963|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,472,466 - 51,473,456)(51,604,261 - 51,604,807)
sequence
gaattcgtggaatacagactcttcctggccaattgcacctcccgtaaagc
ccttagaatgggggcattgtcatcagaacaggggcaaattcatgctcata
ttggtcgctaattgccaccttgactctgcaattcctaaaatgtctttgaa
aaagaagctttgcacagttttaagttaaagcaaatctatattaatttaaa
ctatgcatgcttgccacgtggcacttacatggaaaaagatagagataagc
ttcagaaaaataagatcaaccaaactagaaagtcagaattctgaaaagtc
tgagaaacattgtgatatcatgaatagatcttgttcaagttttaaaccca
cattatcatatagtagtcttaaaccttaatggccaatttaatattcaatg
cctaactctatatatctaacatatattaattatttcagtgctccaaatgt
cttagtttatgatcctggataaaaatattttaaatggaatctattcatta
ttatttacgtctctcatccacaaagttgctaataaatgcttatcttttaa
gatagtaatagatatatatgggactggagagatggctcatcagagaagag
tggtttcctgctcttccagaaggcctgggtgtgagttcccagcatctaca
gtgagcagctcacagctctatgtaactccagttctaagggatccaagaaa
cctgttctgggcgctattggcacctgcatttacatgtgtgtacacccaca
cagagacaaataaaggattttacaaaataaaaaataagtctgttttaaaa
ctttgaataattagtgtattcaatttctgaatgcatgtcttagtggaaat
ttgggaccctttaaactttttctctaaattgttttctagccaaattcaaa
tgactctccccccagtcccctggttaatataaactaaaaacaagtattac
tggtttatgcatgtgggcctagctgtgtcttcttggagagac
gaattctatgcagttgttttcatacctggttatcattgcagtaaataatc
cagtaatctttgcttttataaattttattttaaataattccaagttactg
aaaaattccaatgctagaacctagaattcttatatcccatgtggtgattc
ttgccacatcgtgagttctttatacagagacaaatgcctttttaattgaa
ttacttaaagatttatttattttatttatttgagtgcactgtagttgctg
tcctcaaacacacaagaagagggcatcagatcccattatggatggttgtg
agccaccatgtggttgctgggaattgaactcagggcctctggaagagcag
tcagtgcttttaacctttgaaccatctctccagcccccgcattatttaaa
gctaagttggatacagtagtttcattaccccttactattgaggctgtgct
tcctaagagtgatgacattctttctatattctgttatgatgaatcagaaa
atgtaacattaccagtattagcatccagtccagagttcagattcaggttt
tactgattaccacagaaacgtcctttctgacttagtttttcactgttttt
ctggtgctcaatggaagacacacattgtattttgctgtcctatttcttta
gttctttataacctagatcaactcctcagcttttcactcatctttttata
acctcaatattttccaggtgtgcaggctaattattttctagaatgtttct
cagttcagattgttgttatttcctcctaaatcagtcaggccaggagactt
cctgaagatcttgttcctgaatatggccacattctttaggtcctgagggt
tagttacatcatgtctttgtgacttgggctaccactttagacaatgagga
ctttttctactataaactgacggtttgcctttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51472466_51473456
seq2: B6Ng01-027C02.b_41_1032

seq1  GAATTCGTGGAATACAGACTCTTCCTGGGAAA--GCACCTCCCGTAAAGC  48
      ||||||||||||||||||||||||||||  ||  ||||||||||||||||
seq2  GAATTCGTGGAATACAGACTCTTCCTGGCCAATTGCACCTCCCGTAAAGC  50

seq1  CCTTAGAATGGGGGCATTGTCATCAGAACAGGGGCAAATTCATGCTCATA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAATGGGGGCATTGTCATCAGAACAGGGGCAAATTCATGCTCATA  100

seq1  TTGGTCGCTAATTGCCACCTTGACTCTGCAATTCCTAAAATGTCTTTGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCGCTAATTGCCACCTTGACTCTGCAATTCCTAAAATGTCTTTGAA  150

seq1  AAAGAAGCTTTGCACAGTTTTAAGTTAAAGCAAATCTATATTAATTTAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTTTGCACAGTTTTAAGTTAAAGCAAATCTATATTAATTTAAA  200

seq1  CTATGCATGCTTGCCACGTGGCACTTACATGGAAAAAGATAGAGATAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCATGCTTGCCACGTGGCACTTACATGGAAAAAGATAGAGATAAGC  250

seq1  TTCAGAAAAATAAGATCAACCAAACTAGAAAGTCAGAATTCTGAAAAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAAATAAGATCAACCAAACTAGAAAGTCAGAATTCTGAAAAGTC  300

seq1  TGAGAAACATTGTGATATCATGAATAGATCTTGTTCAAGTTTTAAACCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACATTGTGATATCATGAATAGATCTTGTTCAAGTTTTAAACCCA  350

seq1  CATTATCATATAGTAGTCTTAAACCTTAATGGCCAATTTAATATTCAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCATATAGTAGTCTTAAACCTTAATGGCCAATTTAATATTCAATG  400

seq1  CCTAACTCTATATATCTAACATATATTAATTATTTCAGTGCTCCAAATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCTATATATCTAACATATATTAATTATTTCAGTGCTCCAAATGT  450

seq1  CTTAGTTTATGATCCTGGATAAAAATATTTTAAATGGAATCTATTCATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTATGATCCTGGATAAAAATATTTTAAATGGAATCTATTCATTA  500

seq1  TTATTTACGTCTCTCATCCACAAAGTTGCTAATAAATGCTTATCTTTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACGTCTCTCATCCACAAAGTTGCTAATAAATGCTTATCTTTTAA  550

seq1  GATAGTAATAGATATATATGGGACTGGAGAGATGGCTCATCAGAGAAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAATAGATATATATGGGACTGGAGAGATGGCTCATCAGAGAAGAG  600

seq1  TGGTTTCCTGCTCTTCCAGAAGGCCTGGGTGTGAGTTCCCAGCATCTACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTGCTCTTCCAGAAGGCCTGGGTGTGAGTTCCCAGCATCTACA  650

seq1  GTGAGCAGCTCACAGCTCTATGTAACTCCAGTTCTAAGGGATCCAAG-AA  697
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGAGCAGCTCACAGCTCTATGTAACTCCAGTTCTAAGGGATCCAAGAAA  700

seq1  CCTGTTCTGGGCGCTATTGGCACCTGCATTTACATGTGTGTACACCCACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTGGGCGCTATTGGCACCTGCATTTACATGTGTGTACACCCACA  750

seq1  CAGAGACAAAT-AAGGA-TTTACAAA--TAAAAATAAGTCTGTTTTAAAA  793
      ||||||||||| ||||| ||||||||   |||||||||||||||||||||
seq2  CAGAGACAAATAAAGGATTTTACAAAATAAAAAATAAGTCTGTTTTAAAA  800

seq1  CTTTGAAATAACTAGTGTATTCAAATTCTGAATGCATGTCTTAGT-GAAA  842
      ||||| ||||| |||||||||||| |||||||||||||||||||| ||||
seq2  CTTTG-AATAATTAGTGTATTCAATTTCTGAATGCATGTCTTAGTGGAAA  849

seq1  TTTGGGACCCTTTAAACATTATTCTCT-AATTGTTTTCTAGCCAAATTCA  891
      ||||||||||||||||| || |||||| ||||||||||||||||||||||
seq2  TTTGGGACCCTTTAAAC-TTTTTCTCTAAATTGTTTTCTAGCCAAATTCA  898

seq1  AATGACTCTCCCCCCAGTTCACACTGGGTAAATATAAACTAAAAACAAGT  941
      ||||||||||||||||||   | |  ||| ||||||||||||||||||||
seq2  AATGACTCTCCCCCCAGT---CCCCTGGTTAATATAAACTAAAAACAAGT  945

seq1  ATTACTGGTCTAATGCATGTGGGCATAGCTGTGTTCTTCGTGGGAGAGAC  991
      ||||||||| | |||||||||||| |||||||| ||||| | ||||||||
seq2  ATTACTGGT-TTATGCATGTGGGCCTAGCTGTG-TCTTC-TTGGAGAGAC  992

seq1: chr1_51604261_51604807
seq2: B6Ng01-027C02.g_66_612 (reverse)

seq1  CCTGAATCTGAACTCTGGACTGGATGCTAATACTGGTAATGTTACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCTGAACTCTGGACTGGATGCTAATACTGGTAATGTTACATTTT  50

seq1  CTGATTCATCATAACAGAATATAGAAAGAATGTCATCACTCTTAGGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCATCATAACAGAATATAGAAAGAATGTCATCACTCTTAGGAAGC  100

seq1  ACAGCCTCAATAGTAAGGGGTAATGAAACTACTGTATCCAACTTAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCAATAGTAAGGGGTAATGAAACTACTGTATCCAACTTAGCTTT  150

seq1  AAATAATGCGGGGGCTGGAGAGATGGTTCAAAGGTTAAAAGCACTGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGCGGGGGCTGGAGAGATGGTTCAAAGGTTAAAAGCACTGACTG  200

seq1  CTCTTCCAGAGGCCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGGCCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCAC  250

seq1  AACCATCCATAATGGGATCTGATGCCCTCTTCTTGTGTGTTTGAGGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCATAATGGGATCTGATGCCCTCTTCTTGTGTGTTTGAGGACAG  300

seq1  CAACTACAGTGCACTCAAATAAATAAAATAAATAAATCTTTAAGTAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACAGTGCACTCAAATAAATAAAATAAATAAATCTTTAAGTAATTC  350

seq1  AATTAAAAAGGCATTTGTCTCTGTATAAAGAACTCACGATGTGGCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAGGCATTTGTCTCTGTATAAAGAACTCACGATGTGGCAAGAA  400

seq1  TCACCACATGGGATATAAGAATTCTAGGTTCTAGCATTGGAATTTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACATGGGATATAAGAATTCTAGGTTCTAGCATTGGAATTTTTCAG  450

seq1  TAACTTGGAATTATTTAAAATAAAATTTATAAAAGCAAAGATTACTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGAATTATTTAAAATAAAATTTATAAAAGCAAAGATTACTGGAT  500

seq1  TATTTACTGCAATGATAACCAGGTATGAAAACAACTGCATAGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTGCAATGATAACCAGGTATGAAAACAACTGCATAGAATTC  547