BAC Information

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BAC

Clone NameB6Ng01-027D13
Chromosome1 (Build37)
Map Location 174,664,992 - 174,665,560
singlet/doubletsinglet
Overlap genenone
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D13.bB6Ng01-027D13.g
ACCDH858028DH858029
length1,154702
definitionDH858028|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D13, 5' end.DH858029|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgttccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagatttactgaaag
gacccagatgtagctgtctcttgtgagactatgccgggcctagcaacaca
gaagtggatgctcacagtcagctaatggatggatcacaggctcccatgga
gagctagagaaagtacccaaggagctaaagggatcttcaccctataggtg
gatcaacattatgaactaaccagtactcctgagctctgactctagctcca
ttgattcaagaatgcctattcgcatcactggaagagaagcccattgtcac
ccaacttttgttgcccgatcagggtaaccctggccatgggggaatcggtt
ggtt
gaattcctgatctttccaagatttttatcatgaatgggtgttggatcttg
tcgaatgctttttccgcatataatgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggaatacattgatggattttcgtacattaaacc
atctctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctggagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtttcctcaatttctattttgtggaatagtttgtgcagaactgg
gattagatcttctttgaaggtctggtagcactctgcagtaaacccatctg
gtcctgggctttttttttggttgggagactattaatgactgcttctattt
ccttagaggatatgggcctgtttagatcgttaacttgatcctgatttaac
tttggtacctagtatctgtctagaaatttgtccatttcatccaggttttc
agttttgttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcatgatctgttgttatgtctctctttttcttttttgattttgttt
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174664992_174665560
seq2: B6Ng01-027D13.g_203_773 (reverse)

seq1  ATTAACAAAATCAGAAATG-AAAAGGGAGACATAACAACAGATCCTGAAG  49
      || |||||||||| ||| | ||||| |||||||||||||||||| |||||
seq2  ATAAACAAAATCAAAAAAGAAAAAGAGAGACATAACAACAGATCATGAAG  50

seq1  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAA  100

seq1  CTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC  149
      || ||||||||||| ||||||||||||||||| ||||||||| |||||||
seq2  CT-GAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACTAGGTACC  149

seq1  AAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTA  199
      |||||| ||||||||||||||| || |||||||||| ||||||||  |||
seq2  AAAGTTAAATCAGGATCAAGTTAACGATCTAAACAGGCCCATATCCTCTA  199

seq1  AAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC--AAAAAAAGCCCAG  247
      | |||||||||||||| ||||||||||||||||||  |||||||||||||
seq2  AGGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAAAGCCCAG  249

seq1  GACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTA  297
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  GACCAGATGGGTTTACTGCAGAGTGCTACCAGACCTTCAAAGAAGATCTA  299

seq1  ATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCT  347
      || ||| |||||||||||||||| |||||||||||| | || |  |||||
seq2  ATCCCAGTTCTGCACAAACTATTCCACAAAATAGAAATTGAGGAAACTCT  349

seq1  ACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGA  397
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCACAGA  399

seq1  AAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATC  447
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGATCCAACAAAGATAGAGAACTCCAGACCAATTTCTCTTATGAATATC  449

seq1  GATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACAT  497
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATGCAAAAATCCTCAATAAAATTCTTGCTAACCGAATCCAAGAACACAT  499

seq1  TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGA  549

seq1  GATGGTTTAATATACGAAAATC  569
      ||||||||||| ||||||||||
seq2  GATGGTTTAATGTACGAAAATC  571