BAC Information

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BAC

Clone NameB6Ng01-027J20
Chromosome1 (Build37)
Map Location 60,470,969 - 60,579,769
singlet/doubletdoublet
Overlap geneAbi2, Raph1, LOC100043027
Upstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1
Downstream geneLOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J20.bB6Ng01-027J20.g
ACCDH858313DH858314
length9961,065
definitionDH858313|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J20, 5' end.DH858314|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,470,969 - 60,471,968)(60,578,679 - 60,579,769)
sequence
gaattccatttatttatttatgacaaagtcttattaatttttgagacagg
gtttctctgtgtaaatctgtgctggaaattggcaaagattaaaattttta
ggttagtgagtgccattagaatacatgcttatgtcaggccgtggtggcgc
acgcctttagtcccagcacttgggagacagatacaggcagatttctgagt
ttgaggccagcttggtctacaaagtgagttccaggacagcctgggctata
cagagaaaccctgtctcgaaaaagcaaaaaaaaaaaaaaaaaaaaaagaa
gaagaagaaagaaagaaagaatgcatgcttatttttaaaaattgataaga
agtagctagatctccaaggacctaaaagttactgttatcttgaatacaca
tctggaacttgctactctgttgaccaggctggcctggaattcagaggtct
acctgctctgcctcctgattgctgaaagaatcatcccacaagatagattt
atttggaacaaaaattgagtttaccttaagcggggcattggtggcagaca
cctttaatctcagtactcaggaggtggggcaggtggatttctggttcaag
gccagcttggtttacatagtgagtttccaggacagcctactctatatgtt
gagaccctgtctcaaaaaacaaaaacataaataaaaagtacttaaaaatg
catgaagaaggaagtcattgagagtagaaatttgagtactcatagttcca
ctcttctcgattttagtctttttgccttcactgagaggaatgaactgaac
aggtgaaccctaagctgaattagggagaacaaattcctggagattcggct
tctcatcctaaggaagttattctaatttccaggaggaacattttggtgta
taggttttcagtgacaaacctgtaatcagtactttgacaagatgaaaagt
agattaaagtagaccctggggtccctggctctgttaaaagtcatcc
gaattccagaagattgccatggctacagctataggatttgctatcatggg
attcattggcttcttcgtgaaactgatccatatacccattaataacatta
ttgtgggtggctgagtccttctcatcacgggacgagtgagccagaggggg
ggacaggggcatgaagtaaagcgttgcctggatgctgtgtggtggttgtt
tcttcctccttcctatgaggttttctacttctcaattaaaataatttcaa
aataaacactttttccataacaacaacaacaacaaaaaagaatatacttt
cttttaagagatagcattttgctttttaaaaacaaaacaaaaaaagacca
ggcaaataaaacccttcctttttatcatgtttatcatttccgcttttaat
ttacagctgttgattcagtcttgtctagctggaacagaagtaatgttcta
gtaatttctttcctattaaacttcattttccttcatttattatttatgtc
ttttctctcagatcattaaccctctgcagagacgattctgcctgtctctg
gcatgaagggcatatgcctggcagccagtattccagcagccagttaggga
aaagaacaggtttggatgtgggattgtttctcggtgtgaacttcatctga
tccttagatttctcagcacaaacacagctgacactttgggctaggtagat
gagtggtgagatgttaccctgggattgtaggatgtttggcagcaccccaa
cctgtactcagcagtaccactagtttcccttccaattgtagataggatac
acaccagtaaaagataaaatcatttatcatcaccatttgaaaatgttatc
tttaggtagaaaattctatagcaaattggagctccttttttcaggaaaat
aaccttgggtttcccttcctaacatcttttccttggaacatactgaataa
gattagtatagatgctagtgcagagactagttgagttcttcacctagctg
ccggtaaaccagttcaacaaaacatcagaatgttgtaatatttctgggtg
gggccagaagtagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60470969_60471968
seq2: B6Ng01-027J20.b_43_1038

seq1  GAATTCCATTTATTTATTTATGACAAAGTCTTATTAATTTTTGAGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTATTTATTTATGACAAAGTCTTATTAATTTTTGAGACAGG  50

seq1  GTTTCTCTGTGTAAATCTGTGCTGGAAATTGGCAAAGATTAAAATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAAATCTGTGCTGGAAATTGGCAAAGATTAAAATTTTTA  100

seq1  GGTTAGTGAGTGCCATTAGAATACATGCTTATGTCAGGCCGTGGTGGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGAGTGCCATTAGAATACATGCTTATGTCAGGCCGTGGTGGCGC  150

seq1  ACGCCTTTAGTCCCAGCACTTGGGAGACAGATACAGGCAGATTTCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAGTCCCAGCACTTGGGAGACAGATACAGGCAGATTTCTGAGT  200

seq1  TTGAGGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCTGGGCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCTGGGCTATA  250

seq1  CAGAGAAACCCTGTCTCGAAAAAGCAAAAAAAAAAAAAAAAAAAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAAGCAAAAAAAAAAAAAAAAAAAAAAGAA  300

seq1  GAAGAAGAAAGAAAGAAAGAATGCATGCTTATTTTTAAAAATTGATAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAAGAAAGAAAGAATGCATGCTTATTTTTAAAAATTGATAAGA  350

seq1  AGTAGCTAGATCTCCAAGGACCTAAAAGTTACTGTTATCTTGAATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAGATCTCCAAGGACCTAAAAGTTACTGTTATCTTGAATACACA  400

seq1  TCTGGAACTTGCTACTCTGTTGACCAGGCTGGCCTGGAATTCAGAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACTTGCTACTCTGTTGACCAGGCTGGCCTGGAATTCAGAGGTCT  450

seq1  ACCTGCTCTGCCTCCTGATTGCTGAAAGAATCATCCCACAAGATAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCTGCCTCCTGATTGCTGAAAGAATCATCCCACAAGATAGATTT  500

seq1  ATTTGGAACAAAAATTGAGTTTACCTTAAGCGGGGCATTGGTGGCAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAACAAAAATTGAGTTTACCTTAAGCGGGGCATTGGTGGCAGACA  550

seq1  CCTTTAATCTCAGTACTCAGGAGGTGGGGCAGGTGGATTTCTGGTTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCTCAGTACTCAGGAGGTGGGGCAGGTGGATTTCTGGTTCAAG  600

seq1  GCCAGCTTGGTTTACATAGTGAG-TTCCAGGACAGCCTACTCTATATGTT  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCAGCTTGGTTTACATAGTGAGTTTCCAGGACAGCCTACTCTATATGTT  650

seq1  GAGACCCTGTCTCAAAAAACAAAAACATAAATAAAAAGTACTTAAAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTGTCTCAAAAAACAAAAACATAAATAAAAAGTACTTAAAAATG  700

seq1  CATGAAGAAGGAAGTCATTGAGAGTAGAAATTTGAGTACTCATAGTTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAAGGAAGTCATTGAGAGTAGAAATTTGAGTACTCATAGTTCCA  750

seq1  CTCTTCTCGATTTTAGTCTTTTTGCCTTCACTGAGAGGAATGAACTGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCGATTTTAGTCTTTTTGCCTTCACTGAGAGGAATGAACTGAAC  800

seq1  AGGTGAACCCTAAGCTGAATTAGGGAGAACAAATTCCTGGAGATTCGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACCCTAAGCTGAATTAGGGAGAACAAATTCCTGGAGATTCGGCT  850

seq1  TCTCATCCTAAGGAAGTTATTCTAATTTCCAGGAGGAACATTTTGGTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCTAAGGAAGTTATTCTAATTTCCAGGAGGAACATTTTGGTGTA  900

seq1  TAGGTTTTCAGTGACAAACCTGTTATCAGTACTTTTGACAAGATTGTAGA  949
      ||||||||||||||||||||||| |||||||| |||||||||||   | |
seq2  TAGGTTTTCAGTGACAAACCTGTAATCAGTAC-TTTGACAAGAT--GAAA  947

seq1  AGTAGATTAAAGTTGTACCCT-GGGTCCCTTGCTCTGTTTAAAATGTCAT  998
      ||||||||||||| | ||||| |||||||| ||||||||  ||| |||||
seq2  AGTAGATTAAAGTAG-ACCCTGGGGTCCCTGGCTCTGTT--AAAAGTCAT  994

seq1  CC  1000
      ||
seq2  CC  996

seq1: chr1_60578679_60579769
seq2: B6Ng01-027J20.g_66_1130 (reverse)

seq1  GGCTACCTCTCTGGCCCCACCTAGAAATACTCTACAACCAATCTTTGATT  50
      ||||||   |||||||||||| |||||||   ||||||  || | ||| |
seq2  GGCTAC--TTCTGGCCCCACCCAGAAATA--TTACAAC--AT-TCTGA-T  42

seq1  GTTTTGTTTGAAACTGTGTTTTACCCTGCAGCTAGGCTGAAGAACTCATA  100
      ||||||||   ||||| ||||   || ||||||||| ||||||||||| |
seq2  GTTTTGTT--GAACTG-GTTT--ACCGGCAGCTAGG-TGAAGAACTCA-A  85

seq1  CTTAGTCTCCTGCACTAGCCATCTATAACTAATCTTAATTCAGTATGTTC  150
      | |||||| ||||||||| ||||||| ||||||||| |||||||||||| 
seq2  C-TAGTCT-CTGCACTAG-CATCTAT-ACTAATCTT-ATTCAGTATGTT-  129

seq1  CCAAGGAAAAGATGTTAGGGAAGGGAAAACCCAAGGTTATTTTTCCTGAA  200
      ||||||||||||||||| ||||||| ||||||||||||| ||||||||||
seq2  CCAAGGAAAAGATGTTA-GGAAGGG-AAACCCAAGGTTA-TTTTCCTGAA  176

seq1  AAAAGGAGCTCCAATTTGCTATTAGAATTTTCTACCTAAAGATAACATTT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAGGAGCTCCAATTTGCTA-TAGAATTTTCTACCTAAAGATAACATTT  225

seq1  TCAAATGGTGATGATAAATGATTTTATCTTTTACTGGTGTGTAATCCTAT  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAAATGGTGATGATAAATGATTTTATCTTTTACTGGTGTGT-ATCCTAT  274

seq1  CTACAATTGGAAGGG-AACTAGTGGTACCTGCTGAGTACAGGTTGGGGTG  349
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CTACAATTGGAAGGGAAACTAGTGGTA-CTGCTGAGTACAGGTTGGGGTG  323

seq1  CTGCCAAACATCCTACAATCCCAGGGTAACATCTCACCACTCATCTACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAACATCCTACAATCCCAGGGTAACATCTCACCACTCATCTACCT  373

seq1  AGCCCAAAGTGTCAGCTGTGTTTGTGCTGAGAAATCTAAGGATCAGATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAAGTGTCAGCTGTGTTTGTGCTGAGAAATCTAAGGATCAGATGA  423

seq1  AGTTCACACCGAGAAACAATCCCACATCCAAACCTGTTCTTTTCCCTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACACCGAGAAACAATCCCACATCCAAACCTGTTCTTTTCCCTAAC  473

seq1  TGGCTGCTGGAATACTGGCTGCCAGGCATATGCCCTTCATGCCAGAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGGAATACTGGCTGCCAGGCATATGCCCTTCATGCCAGAGACA  523

seq1  GGCAGAATCGTCTCTGCAGAGGGTTAATGATCTGAGAGAAAAGACATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATCGTCTCTGCAGAGGGTTAATGATCTGAGAGAAAAGACATAAA  573

seq1  TAATAAATGAAGGAAAATGAAGTTTAATAGGAAAGAAATTACTAGAACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGAAGGAAAATGAAGTTTAATAGGAAAGAAATTACTAGAACAT  623

seq1  TACTTCTGTTCCAGCTAGACAAGACTGAATCAACAGCTGTAAATTAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGTTCCAGCTAGACAAGACTGAATCAACAGCTGTAAATTAAAAG  673

seq1  CGGAAATGATAAACATGATAAAAAGGAAGGGTTTTATTTGCCTGGTCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAATGATAAACATGATAAAAAGGAAGGGTTTTATTTGCCTGGTCTTT  723

seq1  TTTTGTTTTGTTTTTAAAAAGCAAAATGCTATCTCTTAAAAGAAAGTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTTAAAAAGCAAAATGCTATCTCTTAAAAGAAAGTATA  773

seq1  TTCTTTTTTGTTGTTGTTGTTGTTATGGAAAAAGTGTTTATTTTGAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTGTTGTTGTTGTTGTTATGGAAAAAGTGTTTATTTTGAAATT  823

seq1  ATTTTAATTGAGAAGTAGAAAACCTCATAGGAAGGAGGAAGAAACAACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTGAGAAGTAGAAAACCTCATAGGAAGGAGGAAGAAACAACCA  873

seq1  CCACACAGCATCCAGGCAACGCTTTACTTCATGCCCCTGTCCCCCCCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGCATCCAGGCAACGCTTTACTTCATGCCCCTGTCCCCCCCTCT  923

seq1  GGCTCACTCGTCCCGTGATGAGAAGGACTCAGCCACCCACAATAATGTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTCGTCCCGTGATGAGAAGGACTCAGCCACCCACAATAATGTTA  973

seq1  TTAATGGGTATATGGATCAGTTTCACGAAGAAGCCAATGAATCCCATGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGGTATATGGATCAGTTTCACGAAGAAGCCAATGAATCCCATGAT  1023

seq1  AGCAAATCCTATAGCTGTAGCCATGGCAATCTTCTGGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCCTATAGCTGTAGCCATGGCAATCTTCTGGAATTC  1065