BAC Information

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BAC

Clone NameB6Ng01-027L18
Chromosome1 (Build37)
Map Location 87,730,206 - 87,869,686
singlet/doubletdoublet
Overlap geneCab39, Itm2c, 4933407L21Rik, Gpr55
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik
Downstream geneSpata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L18.bB6Ng01-027L18.g
ACCDH858400DH858401
length1,0541,109
definitionDH858400|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L18, 5' end.DH858401|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,730,206 - 87,731,268)(87,868,560 - 87,869,686)
sequence
gaattcactatgtagaattatttttatttttaaaacatttttattggatt
ataaaattctaggatgatagcttagtagtttggttttcttagtagtttta
gcagttccctgctatctgctggcatgtatagtttctgtcaagaagtccca
ctggcattctttggtttgctttggctgtgcttctctccgtactgcccccc
ctcccccaacggctacttttaagattctctctctatcatcagatttaaac
agttctttgttctgaatctctgcatggactcctcctctgtgtctatatct
gcatgtgggtacatgtgcatatgtgtatacgtggagctgaggagggtatt
attgaagccctctgaggccttctgagagttctaagatctgaattctagtc
cttgtgacggcacagcaagcgctcttcaccacagccatctttttatataa
tccattcttatttcttttcctttaacttttaaaaatgggtatgtgtgttt
tgcttgcatgtagtctgttcatcaaatgcatgactggtgcccaggagcct
agaagagagcatcataccccttgtaactggggtgaccaaactgttgagag
cacacaagtaggggctggaactcaatctgggtcccccagaagactagcca
gtgcttttaagtactgagccatctctccagccatcttatttctatttctt
acacgagatttatttgccttttactagtattttttttttttttgcttagg
acttttgtttgtttttgagatagggtccctctatgtaatcctcactatcc
tggaacaacgtaaagataaggctgacctcaaactctcagacatgcctaac
tccaactcccaagtactgggaattgaaggggggcacctgggcaattcaca
gttgttttcatgatcacattgtcaaatttttgtctgtctttctctctttg
gggactaactatagctatgtatatactaagttaccctaagcttataagca
ggatgtccccacctacgtcattccatgatcattttggctactttgtactc
ttca
gaattccagcgactcagttctgatcggtaacttcacaaacatacctaggg
agcagcctggccttcagcactcttgaagttttgtggtctgacatccatat
tgttgctgttctctctggtctttgaggcagtcccgaatcctgaacctgtg
tgtagggtgcagccgtcaatatgatgtctctccattcccctcccaggtgc
accgtgtccactggcttacctttctccctggactgatgggtttgtgggtc
aggttagagtcttcagagaggaaggagcctctgttgaggaaaagccttca
tgagatccagctgtaaggcattttctcaattagtgatcagtgtgggaggg
ctcagcccgtagtgggtggtgccattcctaggctggtatcctgagttcta
taagaaagcaggctgagcaagccatggaaagcaataatcaatgcatgttg
gtttgttatctttagctagagatggaacctgaagcactgaatgtgttaag
cactcaaaatacctctgagctaaacacacttcaggcctttattggttttt
gttagaactgaaacctcaagctgagctctttgacaaaccggcagtgagaa
aaaaaacgagccagtaagcagcatccagtcacggcctctggatcagctcc
tgcctccaggttccagccctgcttgagttcctgtcctgacttcctccaat
gatgggctatggtctgggaatgtaagacaataaaccctttcctccccatc
ttgcttttttgttcatggtgtttcatcgcaggaatagagactctgactaa
gacactttctgaagccttggtgaattgtagttctcttgtgacccatgctt
ttccatcttgatggcttctaacatctctgtaatctctttaatgttgctct
ttcccagagtcatatccaccctctccttcttcttcacagcatggaactca
ggtctaatgctgtagtcaaacacttcaccactgagccacggtcttagcac
cagaatttgccacttaaaatttaaagttactgggtagggggtgaactgcc
cttaacctagtctcataagcaaagccagccaagctctttctgagttgggg
atatccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87730206_87731268
seq2: B6Ng01-027L18.b_45_1098

seq1  GAATTCACTATGTAGAATTATTTTTATTTTTAAAACATTTTTATTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGAATTATTTTTATTTTTAAAACATTTTTATTGGATT  50

seq1  ATAAAATTCTAGGATGATAGCTTAGTAGTTTGGTTTTCTTAGTAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCTAGGATGATAGCTTAGTAGTTTGGTTTTCTTAGTAGTTTTA  100

seq1  GCAGTTCCCTGCTATCTGCTGGCATGTATAGTTTCTGTCAAGAAGTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCCTGCTATCTGCTGGCATGTATAGTTTCTGTCAAGAAGTCCCA  150

seq1  CTGGCATTCTTTGGTTTGCTTTGGCTGTGCTTCTCTCCGTACTGCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTCTTTGGTTTGCTTTGGCTGTGCTTCTCTCCGTACTGCCCCCC  200

seq1  CTCCCCCAACGGCTACTTTTAAGATTCTCTCTCTATCATCAGATTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAACGGCTACTTTTAAGATTCTCTCTCTATCATCAGATTTAAAC  250

seq1  AGTTCTTTGTTCTGAATCTCTGCATGGACTCCTCCTCTGTGTCTATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGTTCTGAATCTCTGCATGGACTCCTCCTCTGTGTCTATATCT  300

seq1  GCATGTGGGTACATGTGCATATGTGTATACGTGGAGCTGAGGAGGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGGTACATGTGCATATGTGTATACGTGGAGCTGAGGAGGGTATT  350

seq1  ATTGAAGCCCTCTGAGGCCTTCTGAGAGTTCTAAGATCTGAATTCTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCCCTCTGAGGCCTTCTGAGAGTTCTAAGATCTGAATTCTAGTC  400

seq1  CTTGTGACGGCACAGCAAGCGCTCTTCACCACAGCCATCTTTTTATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACGGCACAGCAAGCGCTCTTCACCACAGCCATCTTTTTATATAA  450

seq1  TCCATTCTTATTTCTTTTCCTTTAACTTTTAAAAATGGGTATGTGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTTATTTCTTTTCCTTTAACTTTTAAAAATGGGTATGTGTGTTT  500

seq1  TGCTTGCATGTAGTCTGTTCATCAAATGCATGACTGGTGCCCAGGAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATGTAGTCTGTTCATCAAATGCATGACTGGTGCCCAGGAGCCT  550

seq1  AGAAGAGAGCATCATACCCCTTGTAACTGGGGTGACCAAACTGTTGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGCATCATACCCCTTGTAACTGGGGTGACCAAACTGTTGAGAG  600

seq1  CACACAAGTAGGGGCTGGAACTCAATCTGGGTCCCCCAGAAGACTAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGTAGGGGCTGGAACTCAATCTGGGTCCCCCAGAAGACTAGCCA  650

seq1  GTGCTTTTAAGTACTGAGCCATCTCTCCAGCCATCTTATTTCTATTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTAAGTACTGAGCCATCTCTCCAGCCATCTTATTTCTATTTCTT  700

seq1  ACACGAGATTTATTTGCCTTTTACTAGTATTTTTTTTTTTTTTGCTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGATTTATTTGCCTTTTACTAGTATTTTTTTTTTTTTTGCTTAGG  750

seq1  ACTTTTGTTTGTTTTTGAGATAGGGTCCCTCTATGTAATCCTCACTATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTTGTTTTTGAGATAGGGTCCCTCTATGTAATCCTCACTATCC  800

seq1  TGGAACAACGTAAAGATAAGGCTGACCTCAAACTCTCAGACATGCCTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAACGTAAAGATAAGGCTGACCTCAAACTCTCAGACATGCCTAAC  850

seq1  TCCAACTCCCAAGTACT-GGAATTGAAGGTGTGCACCTGGCCAATTCACA  899
      ||||||||||||||||| ||||||||||| | |||||||| |||||||||
seq2  TCCAACTCCCAAGTACTGGGAATTGAAGGGGGGCACCTGGGCAATTCACA  900

seq1  GTTGTTTTCATTGATCACATTGTCAAATTTTTTGTCTGTTCTTTCCTCTC  949
      |||||||||| |||||||||||||||| |||||||||| ||||| |||||
seq2  GTTGTTTTCA-TGATCACATTGTCAAA-TTTTTGTCTG-TCTTT-CTCTC  946

seq1  TTTGGGGACTAACTATAGCTATGTATATTACTAAAGTTACCCTAAAGCTT  999
      ||||||||||||||||||||||||||| |||| |||||||||| ||||||
seq2  TTTGGGGACTAACTATAGCTATGTATA-TACT-AAGTTACCCT-AAGCTT  993

seq1  ATAAGCAGGATGTCCCCACCTACGTCATTCCCATGATTCATTTTTGTCTA  1049
      ||||||||||||||||||||||||||||| |||||| ||| ||||| |||
seq2  ATAAGCAGGATGTCCCCACCTACGTCATT-CCATGA-TCA-TTTTGGCTA  1040

seq1  CTTGTTACTCTTCA  1063
      |||  |||||||||
seq2  CTTTGTACTCTTCA  1054

seq1: chr1_87868560_87869686
seq2: B6Ng01-027L18.g_69_1177 (reverse)

seq1  CCTGGATATCCCCAAACTCACGAAGTAGACTAGGCTAGCTTCTGCCTACT  50
      ||||||||||||| |||||| |||  || || |||| |||| ||| || |
seq2  CCTGGATATCCCC-AACTCA-GAAAGAG-CTTGGCTGGCTT-TGCTTA-T  45

seq1  GAGAGCTAGGATTAAAGGCATGTACCACCACTACCCAGTAACCTTAAATT  100
      |||| ||||| |||| |||| || |  || |||||||||||| ||||| |
seq2  GAGA-CTAGG-TTAAGGGCA-GTTCACCCCCTACCCAGTAACTTTAAA-T  91

seq1  TTTAAGTAGCAAAAATCTGGGTGCTAAGACCGTGGCTCAGTGGTGAAGTG  150
      ||||||| || ||| ||| |||||||||||||||||||||||||||||||
seq2  TTTAAGTGGC-AAATTCT-GGTGCTAAGACCGTGGCTCAGTGGTGAAGTG  139

seq1  TTTGACTAACAGGCATTAGACCCTGAGTTCCATTGCTGGTGAAGAAGAAG  200
      ||||||| ||| |||||||| ||||||||||| |||| ||||||||||||
seq2  TTTGACT-ACA-GCATTAGA-CCTGAGTTCCA-TGCT-GTGAAGAAGAAG  184

seq1  GAGAGGGTGGATAATGAACTCTGGGAAAGAGCAACATTAAAGAGATTGAC  250
      |||||||||||| ||| |||||||||||||||||||||||||||||| ||
seq2  GAGAGGGTGGAT-ATG-ACTCTGGGAAAGAGCAACATTAAAGAGATT-AC  231

seq1  AGAGATGTTAG-AGCCATCAAGATGGAAAGGCATGGGTCACAAGAGAACT  299
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AGAGATGTTAGAAGCCATCAAGATGGAAAAGCATGGGTCACAAGAGAACT  281

seq1  ACAATTCACCAAGGCTTCAGAAAGTGTCTTAGTCAGAGTCTCTATTCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCACCAAGGCTTCAGAAAGTGTCTTAGTCAGAGTCTCTATTCCTG  331

seq1  CGATGAAACACCATGAACAAAAAAGCAAGATGGGGAGGAAAGGGTTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAAACACCATGAACAAAAAAGCAAGATGGGGAGGAAAGGGTTTATT  381

seq1  GTCTTACATTCCCAGACCATAGCCCATCATTGGAGGAAGTCAGGACAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACATTCCCAGACCATAGCCCATCATTGGAGGAAGTCAGGACAGGA  431

seq1  ACTCAAGCAGGGCTGGAACCTGGAGGCAGGAGCTGATCCAGAGGCCGTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCAGGGCTGGAACCTGGAGGCAGGAGCTGATCCAGAGGCCGTGA  481

seq1  CTGGATGCTGCTTACTGGCTCGTTTTTTTTCTCACTGCCGGTTTGTCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCTGCTTACTGGCTCGTTTTTTTTCTCACTGCCGGTTTGTCAAA  531

seq1  GAGCTCAGCTTGAGGTTTCAGTTCTAACAAAAACCAATAAAGGCCTGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGCTTGAGGTTTCAGTTCTAACAAAAACCAATAAAGGCCTGAAG  581

seq1  TGTGTTTAGCTCAGAGGTATTTTGAGTGCTTAACACATTCAGTGCTTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGCTCAGAGGTATTTTGAGTGCTTAACACATTCAGTGCTTCAG  631

seq1  GTTCCATCTCTAGCTAAAGATAACAAACCAACATGCATTGATTATTGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTCTAGCTAAAGATAACAAACCAACATGCATTGATTATTGCTT  681

seq1  TCCATGGCTTGCTCAGCCTGCTTTCTTATAGAACTCAGGATACCAGCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCTTGCTCAGCCTGCTTTCTTATAGAACTCAGGATACCAGCCTA  731

seq1  GGAATGGCACCACCCACTACGGGCTGAGCCCTCCCACACTGATCACTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCACCACCCACTACGGGCTGAGCCCTCCCACACTGATCACTAAT  781

seq1  TGAGAAAATGCCTTACAGCTGGATCTCATGAAGGCTTTTCCTCAACAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATGCCTTACAGCTGGATCTCATGAAGGCTTTTCCTCAACAGAG  831

seq1  GCTCCTTCCTCTCTGAAGACTCTAACCTGACCCACAAACCCATCAGTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCCTCTCTGAAGACTCTAACCTGACCCACAAACCCATCAGTCCA  881

seq1  GGGAGAAAGGTAAGCCAGTGGACACGGTGCACCTGGGAGGGGAATGGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGGTAAGCCAGTGGACACGGTGCACCTGGGAGGGGAATGGAGA  931

seq1  GACATCATATTGACGGCTGCACCCTACACACAGGTTCAGGATTCGGGACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATATTGACGGCTGCACCCTACACACAGGTTCAGGATTCGGGACT  981

seq1  GCCTCAAAGACCAGAGAGAACAGCAACAATATGGATGTCAGACCACAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAAGACCAGAGAGAACAGCAACAATATGGATGTCAGACCACAAAA  1031

seq1  CTTCAAGAGTGCTGAAGGCCAGGCTGCTCCCTAGGTATGTTTGTGAAGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAGTGCTGAAGGCCAGGCTGCTCCCTAGGTATGTTTGTGAAGTT  1081

seq1  ACCGATCAGAACTGAGTCGCTGGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  ACCGATCAGAACTGAGTCGCTGGAATTC  1109