BAC Information

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BAC

Clone NameB6Ng01-028C08
Chromosome1 (Build37)
Map Location 160,927,570 - 160,966,269
singlet/doubletdoublet
Overlap genenone
Upstream gene6430517E21Rik, Astn1, Pappa2
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028C08.bB6Ng01-028C08.g
ACCDH858700DH858701
length1,0881,133
definitionDH858700|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C08, 5' end.DH858701|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,965,158 - 160,966,269)(160,927,570 - 160,928,717)
sequence
gaattctagatgacaagcgataacaggtctctgtcacacagttaaccagg
tgcagaggcactgtctattaaatcagttaatcctccctgagcttcctaat
tcttttgtaaatgaaactatagggaagtgaaggtactttctagccagaag
ctgtgggtctggggtttgagccctggccagctgactaagaagagaagctg
ctgttattcactctgcaaaaactgtctcttggttcaaacctatgctttat
ttatcattaattagttattgttcagtttcaaacccagcccaaaaggctga
agtgcctttcctcacatgatctgtgaataagagcaaagaccagaacaagg
gtgtttaaccctctaaactatactctcttcattccaatacagtaaaacaa
gggccaggaactacccgatccccaaaagaaatttgtgtttatgtcctcta
atatctcattccattggcagaccatgcaacacagacatcatcaacatgtt
catgtctgtacttaggaataatgcactgtttcactttcattattattgtc
aaaatttcaattaggtttttactgttcttcatgaatcatctattgcatca
gaagctcttttacagcatatatattttaaaacttattttgcaaatttcag
agaagagctgaagagttatagttacacacacacacacacacacacacaca
cacactcagcaaaaaaaaaaatatgatcaagaacttgaaccactagcttc
agttttattctagaacagagatttcaagctggaaccttatggggagccct
tccaaagttgtattttgcttggcccatgtggtgttttttaaaactaataa
ggcaacattgaagaaactcagaaattttgcataaaaataagacttgctgg
ctctcactgaacagaaggatcttgaaaggctgcactgggattcccagaga
gcggtctagccagacctggtgggccacttccttgcagggagctaagctct
tcacagccttcatcccagagatttcacatcctgtgaagatgtcacgtcat
ggctatagtacaagtgttgtttctgtcattgctagctc
gaattcttctaaatgggcctttattgctattctagcatgagcatgcataa
atatatgatatgaaagcagaatggggactatgtgggaagaggaaaagaat
gaagaggaaggagattaggaagcagtaacataataggtaaatgtgatcaa
agtccatgagatacttgagacacatggcattgtgtacccatcgctttgtg
cacagtgaatacatcctaataaaaaaataaaataaaatatctttgttata
ttcaaagaaagaaaggaacccaagttaccacatacacacacacacacaca
cacacacacacacacacaccacatacatacacacacacacttttcttaaa
catttgctcctgctaagtctctgtcattatctatgaaatcagggtggtta
ctatcactctcttgcagggttttggatgaagtaaacatatggcatgaaca
gtgtctaacaatgtgcatgtataaatgctgtcctgttgcttgttagttat
ctattgactgaaaacatttacaggtttgtacctttttttggtcctgtgcc
ccagccttgaaaacatgcctaggttaatttactatgggacaagaactagg
aataatgagtgattccatcaccatggctgagggccttctggattatccaa
tactgatgaaacctccggtaagttagcacatctcatccggatcagggttg
ctgtgagaacttactgcaaaccacagcaacataaactggtcaagccaaga
tcaccctagtcagatcttccataaatcaatgagcttcacaatctatacca
ttaatatacttaggacttgctcgatgtgaaagtcttgtattttgttagta
gcatcattgtatcagttaaaaatggagaatgccattatgagtgtctttac
tatcatttcttatgattataatcatcattttatagagacacaaaaaagtg
ttactccggctttacctagctattcacactgaaatgtcttctctgtctag
tattttcccagagaagaaaagaaggaagagcacaagtgagcatccttcag
aaagtttgcttctttttttctgacgattgttgtatgatgcttcttttttc
tttagtagtgaactgtgacggttacctcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160965158_160966269
seq2: B6Ng01-028C08.b_44_1131 (reverse)

seq1  GAGCTAGCCAGATGACAGGAAAACAACACTTTGTACCTAATAGCCAATGG  50
      ||||||||   |||||||  ||||||||| ||||||   |||||| ||| 
seq2  GAGCTAGC--AATGACAG--AAACAACAC-TTGTAC--TATAGCC-ATGA  42

seq1  CCGGTGACATTCTTTCACAGGATGTGGAAATCTCTGGGGAATGAAGGGCT  100
      |  |||||||   |||||||||||| ||||||||||||  ||||| ||||
seq2  C--GTGACAT--CTTCACAGGATGT-GAAATCTCTGGG--ATGAA-GGCT  84

seq1  GTGGAGAGCTTTAGCTCCCTGCAAAGGAAGTGGGCCCCACCCAGGTCTGG  150
      ||| ||||| |||||||||||| ||||||||||  |||| ||||||||||
seq2  GTGAAGAGC-TTAGCTCCCTGC-AAGGAAGTGG--CCCA-CCAGGTCTGG  129

seq1  CTAAGAACCGCTCTCTGGGAATCCCAGTGCAGCCTTTCAAGATCCTTCTT  200
      |||   |||||||||||||||||||||||||||||||||||||||||| |
seq2  CTA--GACCGCTCTCTGGGAATCCCAGTGCAGCCTTTCAAGATCCTTC-T  176

seq1  GTTCAGTGAGAGCCAGCAAGTCTTATTTTTATGCAAAATTTCTGAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGAGAGCCAGCAAGTCTTATTTTTATGCAAAATTTCTGAGTTTC  226

seq1  TTCAATGTTGCCTTATTAGTTTTAAAAAACACCACATGGGCCAAGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTGCCTTATTAGTTTTAAAAAACACCACATGGGCCAAGCAAAA  276

seq1  TACAACTTTGGAAGGGCTCCCCATAAGGTTCCAGCTTGAAATCTCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTTGGAAGGGCTCCCCATAAGGTTCCAGCTTGAAATCTCTGTTC  326

seq1  TAGAATAAAACTGAAGCTAGTGGTTCAAGTTCTTGATCATATTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAAACTGAAGCTAGTGGTTCAAGTTCTTGATCATATTTTTTTTT  376

seq1  TTGCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTATAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTATAACTC  426

seq1  TTCAGCTCTTCTCTGAAATTTGCAAAATAAGTTTTAAAATATATATGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTTCTCTGAAATTTGCAAAATAAGTTTTAAAATATATATGCTG  476

seq1  TAAAAGAGCTTCTGATGCAATAGATGATTCATGAAGAACAGTAAAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGCTTCTGATGCAATAGATGATTCATGAAGAACAGTAAAAACCT  526

seq1  AATTGAAATTTTGACAATAATAATGAAAGTGAAACAGTGCATTATTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATTTTGACAATAATAATGAAAGTGAAACAGTGCATTATTCCTA  576

seq1  AGTACAGACATGAACATGTTGATGATGTCTGTGTTGCATGGTCTGCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGACATGAACATGTTGATGATGTCTGTGTTGCATGGTCTGCCAAT  626

seq1  GGAATGAGATATTAGAGGACATAAACACAAATTTCTTTTGGGGATCGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGATATTAGAGGACATAAACACAAATTTCTTTTGGGGATCGGGT  676

seq1  AGTTCCTGGCCCTTGTTTTACTGTATTGGAATGAAGAGAGTATAGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGGCCCTTGTTTTACTGTATTGGAATGAAGAGAGTATAGTTTAG  726

seq1  AGGGTTAAACACCCTTGTTCTGGTCTTTGCTCTTATTCACAGATCATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAAACACCCTTGTTCTGGTCTTTGCTCTTATTCACAGATCATGTG  776

seq1  AGGAAAGGCACTTCAGCCTTTTGGGCTGGGTTTGAAACTGAACAATAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCACTTCAGCCTTTTGGGCTGGGTTTGAAACTGAACAATAACT  826

seq1  AATTAATGATAAATAAAGCATAGGTTTGAACCAAGAGACAGTTTTTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGATAAATAAAGCATAGGTTTGAACCAAGAGACAGTTTTTGCAG  876

seq1  AGTGAATAACAGCAGCTTCTCTTCTTAGTCAGCTGGCCAGGGCTCAAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAACAGCAGCTTCTCTTCTTAGTCAGCTGGCCAGGGCTCAAACC  926

seq1  CCAGACCCACAGCTTCTGGCTAGAAAGTACCTTCACTTCCCTATAGTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCACAGCTTCTGGCTAGAAAGTACCTTCACTTCCCTATAGTTTC  976

seq1  ATTTACAAAAGAATTAGGAAGCTCAGGGAGGATTAACTGATTTAATAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAAGAATTAGGAAGCTCAGGGAGGATTAACTGATTTAATAGAC  1026

seq1  AGTGCCTCTGCACCTGGTTAACTGTGTGACAGAGACCTGTTATCGCTTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTCTGCACCTGGTTAACTGTGTGACAGAGACCTGTTATCGCTTGT  1076

seq1  CATCTAGAATTC  1112
      ||||||||||||
seq2  CATCTAGAATTC  1088

seq1: chr1_160927570_160928717
seq2: B6Ng01-028C08.g_64_1196

seq1  GAATTCTTCTAAATGGGCCTTTATTGCTATTCTAGCATGAGCATGCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAATGGGCCTTTATTGCTATTCTAGCATGAGCATGCATAA  50

seq1  ATATATGATATGAAAGCAGAATGGGGACTATGTGGGAAGAGGAAAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGATATGAAAGCAGAATGGGGACTATGTGGGAAGAGGAAAAGAAT  100

seq1  GAAGAGGAAGGAGATTAGGAAGCAGTAACATAATAGGTAAATGTGATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGGAGATTAGGAAGCAGTAACATAATAGGTAAATGTGATCAA  150

seq1  AGTCCATGAGATACTTGAGACACATGGCATTGTGTACCCATCGCTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGAGATACTTGAGACACATGGCATTGTGTACCCATCGCTTTGTG  200

seq1  CACAGTGAATACATCCTAATAAAAAAATAAAATAAAATATCTTTGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAATACATCCTAATAAAAAAATAAAATAAAATATCTTTGTTATA  250

seq1  TTCAAAGAAAGAAAGGAACCCAAGTTACCACATACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAAGAAAGGAACCCAAGTTACCACATACACACACACACACACA  300

seq1  CACACACACACACACACACCACATACATACACACACACACTTTTCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCACATACATACACACACACACTTTTCTTAAA  350

seq1  CATTTGCTCCTGCTAAGTCTCTGTCATTATCTATGAAATCAGGGTGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTCCTGCTAAGTCTCTGTCATTATCTATGAAATCAGGGTGGTTA  400

seq1  CTATCACTCTCTTGCAGGGTTTTGGATGAAGTAAACATATGGCATGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTCTCTTGCAGGGTTTTGGATGAAGTAAACATATGGCATGAACA  450

seq1  GTGTCTAACAATGTGCATGTATAAATGCTGTCCTGTTGCTTGTTAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAACAATGTGCATGTATAAATGCTGTCCTGTTGCTTGTTAGTTAT  500

seq1  CTATTGACTGAAAACATTTACAGGTTTGTACCTTTTTTTGGTCCTGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACTGAAAACATTTACAGGTTTGTACCTTTTTTTGGTCCTGTGCC  550

seq1  CCAGCCTTGAAAACATGCCTAGGTTAATTTACTATGGGACAAGAACTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGAAAACATGCCTAGGTTAATTTACTATGGGACAAGAACTAGG  600

seq1  AATAATGAGTGATTCCATCACCATGGCTGAGGGCCTTCTGGATTATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAGTGATTCCATCACCATGGCTGAGGGCCTTCTGGATTATCCAA  650

seq1  TACTGATGAAACCTCCGGTAAGTTAGCACATCTCATCCGGATCAGGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGAAACCTCCGGTAAGTTAGCACATCTCATCCGGATCAGGGTTG  700

seq1  CTGTGAGAACTTACTGCAAACCACAGCAACATAAACTGGTCAAGCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAACTTACTGCAAACCACAGCAACATAAACTGGTCAAGCCAAGA  750

seq1  TCACCCTAGTCAGATCTTCCATAAATCAATGAGCTTCACAATCTATACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTAGTCAGATCTTCCATAAATCAATGAGCTTCACAATCTATACCA  800

seq1  TTAATATACTTAGGACTTGCTCGATGTGAAAGTCTTGTATTTTGTTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATACTTAGGACTTGCTCGATGTGAAAGTCTTGTATTTTGTTAGTA  850

seq1  GCATCATTGTATCAGTTAAAAATGGAGAATGCCATTATGAGTGTCTTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTGTATCAGTTAAAAATGGAGAATGCCATTATGAGTGTCTTTAC  900

seq1  TATCA-TTCTTATGATTATAATCATCATTTTATAGAGAACACAAAAAAAG  949
      ||||| ||||||||||||||||||||||||||||||| |||| |||||||
seq2  TATCATTTCTTATGATTATAATCATCATTTTATAGAG-ACAC-AAAAAAG  948

seq1  TGTTACTCCGGCTTTACCTAGCTATTCACACTGAAATGTCTTCTCTGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCCGGCTTTACCTAGCTATTCACACTGAAATGTCTTCTCTGTCT  998

seq1  AGTATTTTCCCAGAGACAGAAAAGAAAGCAGGAGACCAAGTGAGCAATCC  1049
      |||||||||||||||| ||||||| ||| | |||  ||||||||| ||||
seq2  AGTATTTTCCCAGAGA-AGAAAAG-AAGGAAGAGCACAAGTGAGC-ATCC  1045

seq1  TTCAGAAAGTTTTGCTTTCTTTTTTCTGACAGATTGTTGTTAATGATGCT  1099
      ||||||||| |||||||  ||||||||||| |||||||||  ||||||||
seq2  TTCAGAAAG-TTTGCTTCTTTTTTTCTGAC-GATTGTTGT--ATGATGCT  1091

seq1  TTCTTTTTTTCTTGTAGGTAGTGACACTGTGACAGTGTAACCTCACACA  1148
      |   ||||||||| || ||||||| ||||||||   || ||||||||||
seq2  T--CTTTTTTCTT-TA-GTAGTGA-ACTGTGAC--GGTTACCTCACACA  1133