BAC Information

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BAC

Clone NameB6Ng01-028D02
Chromosome1 (Build37)
Map Location 92,652,697 - 92,797,005
singlet/doubletdoublet
Overlap geneCol6a3
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8
Downstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028D02.bB6Ng01-028D02.g
ACCDH858736DH858737
length1,1461,074
definitionDH858736|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D02, 5' end.DH858737|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,652,697 - 92,653,857)(92,795,925 - 92,797,005)
sequence
gaattcactggaactggagatacagatcggtgtgagccaccatttgctgg
aacctgaacccaggtcctctgcaagagcagcgggagctcttaaccttgag
ccatctttctagcctagcctccagtcatttttttttcttaatgcctggct
taggaatgaccatgggacccacttgggtatcagaatgccacctcctggct
tcagatttcccttggctttccatcagattgcattagaacctgtctattct
ttcccattattgaaaaagatgtgaaaactcttgcgtggctttcagcaaca
atgggggatgctcaaacaatgggggatgctcaaacaatgggggatactca
aacaatgggggatgctcaaacaatgggggatgctcaaacaatgggggatg
ctcaaacaatgggggatgctcaaacaatgggggatgctcaaaaaatgggg
gatgctcaaagaccaggatcagttccggaactagatgggaatcaggaacc
taggcatccagaaccacatccagagttcacatcacagagaggttttaggc
tcagttactacatctggcatgagcatgattccttaccagtaaactttact
ggtgccaaggggtggagtgtcagacacacagcaggttttggtgcttcctc
agagtctttacacagcatggggacccctttctttcttctgaaggatgagc
aatgtagtctctcatcatctccattctgtctccattaccatttctttagg
ttcatatgcaacgtgactggtcagtagcatgtgtgactctctcttcagcc
cacctctgaattctcttgtgtctgtggtgtgtcagatgtctctagctgaa
ctgtctacctccgtggtccagatcccctgcctcgacacccaaaccctctc
cttaacagtgttgtgcagttctctctaacaaatggagggagtgggcatca
ccaggttaaccaccaacaagattctgagagtaacaggtaacactcagctt
cttgcttcttgacccactgacccagctcccagtgctgattgtgacaaact
cactgctctcatgtgctatgctgactttctccaccagactgtctgctcag
tcttcttggcttttgtcattcctttgttctctgtgaaagactggat
gaattctttccccttcagccagcaccacagaccttgggaaggaagatggg
aagctgggattctgaggttactaagcttttatttttctttggctgagtaa
gacttactgaatcttagagtcagaaagtcctgggtgttatgtggtcctgt
gctcagtctagcgagcacaagggtgggagaccatcctgtctgttctgact
tcatttctgatgctgtgataaaatattctgacagaaagcaactcaggagg
aaaagcttacaactccacgtttgaatccgtcactgtgagggctttacagg
gtcaggagcttgaatcaagccaagccacatccatagtgaagagctgaagg
aaaaggcgtgcgtccttgtctgcccacttgcctattttcagctagctttc
ttctttcttatactattcaggataacctgactaggggatggtgctaccca
ccatggacactcccacagtacaatctggtaacttctcattaagattctct
tccaggatgattccatgttgtatcaagttaacagaactaacaagcacacg
gacttccaggagagggtgccccattgcctactctcacctatagggtgtga
ggttgttgcttgtgctcaatactactggccatacttctgtatgggaagta
ggaagcagacaagaaacaggttaggccaaccaaggagtaaacatggtctc
acttctaaggcctcctgtagtcaagtgaatggaatgtgaggagaaatggt
gtttcagttctcaacttaaacacatgctctctctctctctctctctctct
ctctcctctcttttctctgtcagactgactctaaagtccacatttaaaaa
tgttaatggctatgggtagcagaggctactgactgcttgaggctgtatgg
attgtatggaagttgtataggaggacggccccagtgaatcgcaattcaga
tgcccgtggcttttaaaagttttctcctgctcattctcctttgaacaatg
gatgtggcctgaaaggaggctgtttctattatgacacagtacaacctaat
gctttcctcctttggaagcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92652697_92653857
seq2: B6Ng01-028D02.b_44_1189

seq1  GAATTCACTGGAACTGGAGATACAGATCGGTGTGAGCCACCATTTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAACTGGAGATACAGATCGGTGTGAGCCACCATTTGCTGG  50

seq1  AACCTGAACCCAGGTCCTCTGCAAGAGCAGCGGGAGCTCTTAACCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAACCCAGGTCCTCTGCAAGAGCAGCGGGAGCTCTTAACCTTGAG  100

seq1  CCATCTTTCTAGCCTAGCCTCCAGTCATTTTTTTTTCTTAATGCCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTCTAGCCTAGCCTCCAGTCATTTTTTTTTCTTAATGCCTGGCT  150

seq1  TAGGAATGACCATGGGACCCACTTGGGTATCAGAATGCCACCTCCTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGACCATGGGACCCACTTGGGTATCAGAATGCCACCTCCTGGCT  200

seq1  TCAGATTTCCCTTGGCTTTCCATCAGATTGCATTAGAACCTGTCTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTCCCTTGGCTTTCCATCAGATTGCATTAGAACCTGTCTATTCT  250

seq1  TTCCCATTATTGAAAAAGATGTGAAAACTCTTGCGTGGCTTTCAGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTATTGAAAAAGATGTGAAAACTCTTGCGTGGCTTTCAGCAACA  300

seq1  ATGGGGGATGCTCAAACAATGGGGGATGCTCAAACAATGGGGGATACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGATGCTCAAACAATGGGGGATGCTCAAACAATGGGGGATACTCA  350

seq1  AACAATGGGGGATGCTCAAACAATGGGGGATGCTCAAACAATGGGGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGGGGATGCTCAAACAATGGGGGATGCTCAAACAATGGGGGATG  400

seq1  CTCAAACAATGGGGGATGCTCAAACAATGGGGGATGCTCAAAAAATGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAATGGGGGATGCTCAAACAATGGGGGATGCTCAAAAAATGGGG  450

seq1  GATGCTCAAAGACCAGGATCAGTTCCGGAACTAGATGGGAATCAGGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAAAGACCAGGATCAGTTCCGGAACTAGATGGGAATCAGGAACC  500

seq1  TAGGCATCCAGAACCACATCCAGAGTTCACATCACAGAGAGGTTTTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCCAGAACCACATCCAGAGTTCACATCACAGAGAGGTTTTAGGC  550

seq1  TCAGTTACTACATCTGGCATGAGCATGATTCCTTACCAGTAAACTTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTACTACATCTGGCATGAGCATGATTCCTTACCAGTAAACTTTACT  600

seq1  GGTGCCAAGGGGTGGAGTGTCAGACACACAGCAGGTTTTGGTGCTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAAGGGGTGGAGTGTCAGACACACAGCAGGTTTTGGTGCTTCCTC  650

seq1  AGAGTCTTTACACAGCATGGGGACCCCTTTCTTTCTTCTGAAGGATGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTTACACAGCATGGGGACCCCTTTCTTTCTTCTGAAGGATGAGC  700

seq1  AATGTAGTCTCTCATCATCTCCATTCTGTCTCCATTACCATTTCTTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTCTCTCATCATCTCCATTCTGTCTCCATTACCATTTCTTTAGG  750

seq1  TTCATATGCAACGTGACTGGTCAGTAGCATGTGTGACTCTCTCTTCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGCAACGTGACTGGTCAGTAGCATGTGTGACTCTCTCTTCAGCC  800

seq1  CACCTCTGAATTCTCTTGTGTCTGTGGTGTGTCAGATGTCTCTAGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGAATTCTCTTGTGTCTGTGGTGTGTCAGATGTCTCTAGCTGAA  850

seq1  CTGTCTACCTCCGTGGTCCAGATCCCCTGCCTCGACACCCAAACCCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACCTCCGTGGTCCAGATCCCCTGCCTCGACACCCAAACCCTCTC  900

seq1  CTTAACAGTGTTGTGCAGGTTCTCTCTAACAAATGGAGGGAGTGGGCATC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTAACAGTGTTGTGCA-GTTCTCTCTAACAAATGGAGGGAGTGGGCATC  949

seq1  ACCAGGTTAACCACCAAACAAAGATCTGAGAGTAAACAGGTAACACTCAG  1000
      ||||||||||||||| |||||   ||||||||| ||||||||||||||||
seq2  ACCAGGTTAACCACC-AACAAGATTCTGAGAGT-AACAGGTAACACTCAG  997

seq1  CTTCCTGCTCCTTGACCCACTGACCCCAGCTCCCCAGTGGCTGAGTGTGA  1050
      |||| |||| ||||||||||||| ||||||| |||||| ||||| |||||
seq2  CTTCTTGCTTCTTGACCCACTGA-CCCAGCT-CCCAGT-GCTGATTGTGA  1044

seq1  CCAAACCTCAGCTGCTCTCAATGTGCCTATGCTGACTTTCTCACACACAG  1100
      |  || |||| |||||||| ||||| |||||||||||||||| ||| |||
seq2  C--AAACTCA-CTGCTCTC-ATGTG-CTATGCTGACTTTCTC-CAC-CAG  1087

seq1  ACTTGCTGCTCAGTCCTC-TGGCTTTTGTCATCCTCTATAGTTCTCTGTA  1149
      |||  |||||||||| || |||||||||||||  ||  | ||||||||| 
seq2  ACTGTCTGCTCAGTCTTCTTGGCTTTTGTCAT--TCCTTTGTTCTCTGT-  1134

seq1  GAAAGACTGGAT  1161
      ||||||||||||
seq2  GAAAGACTGGAT  1146

seq1: chr1_92795925_92797005
seq2: B6Ng01-028D02.g_65_1138 (reverse)

seq1  TCAGTGCTTCCAAAAGGTAGGAAAGCATCAGCTGTAACTGTGTCCATAAT  50
      ||||||||||||||  | |||||||||| || |   ||||||| ||||||
seq2  TCAGTGCTTCCAAA--GGAGGAAAGCATTAGGTTGTACTGTGT-CATAAT  47

seq1  AGAAACAGCATCATTTCA-GCCACATTCCATTGGTTCAAAGGAGAATTGA  99
      ||||||||| || ||||| |||||| |||||| ||||||||||||| |||
seq2  AGAAACAGCCTCCTTTCAGGCCACA-TCCATT-GTTCAAAGGAGAA-TGA  94

seq1  GCAGGAGAAAGCTTTTCAAAGCCACGGGCATCTGGAATTGCGATTCACTG  149
      |||||||||| ||||| |||||||||||||||| ||||||||||||||||
seq2  GCAGGAGAAAACTTTTAAAAGCCACGGGCATCT-GAATTGCGATTCACTG  143

seq1  GGGCCGTCCTCCTATACAACTTCCATACAATCCATACAGCCTCAAGCAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGTCCTCCTATACAACTTCCATACAATCCATACAGCCTCAAGCAGT  193

seq1  CAGTAGCCTCTGCTACCCATAGCCATTAACATTTTTAAATTGTGGACTTT  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTAGCCTCTGCTACCCATAGCCATTAACATTTTTAAA-TGTGGACTTT  242

seq1  AGAGTCAGTCTGACAGAGAAAAGAGAGGAGAGAGAGAGAGAGAGAGAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGTCTGACAGAGAAAAGAGAGGAGAGAGAGAGAGAGAGAGAGAG  292

seq1  AGAGAGCATGTGTTTAAGTTGAGAACTGAAACACCATTTCTCCTCACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATGTGTTTAAGTTGAGAACTGAAACACCATTTCTCCTCACATT  342

seq1  CCATTCACTTGACTACAGGAGGCCTTAGAAGTGAGACCATGTTTACTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACTTGACTACAGGAGGCCTTAGAAGTGAGACCATGTTTACTCCT  392

seq1  TGGTTGGCCTAACCTGTTTCTTGTCTGCTTCCTACTTCCCATACAGAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCCTAACCTGTTTCTTGTCTGCTTCCTACTTCCCATACAGAAGT  442

seq1  ATGGCCAGTAGTATTGAGCACAAGCAACAACCTCACACCCTATAGGTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGTAGTATTGAGCACAAGCAACAACCTCACACCCTATAGGTGAG  492

seq1  AGTAGGCAATGGGGCACCCTCTCCTGGAAGTCCGTGTGCTTGTTAGTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCAATGGGGCACCCTCTCCTGGAAGTCCGTGTGCTTGTTAGTTCT  542

seq1  GTTAACTTGATACAACATGGAATCATCCTGGAAGAGAATCTTAATGAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTGATACAACATGGAATCATCCTGGAAGAGAATCTTAATGAGAA  592

seq1  GTTACCAGATTGTACTGTGGGAGTGTCCATGGTGGGTAGCACCATCCCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAGATTGTACTGTGGGAGTGTCCATGGTGGGTAGCACCATCCCCT  642

seq1  AGTCAGGTTATCCTGAATAGTATAAGAAAGAAGAAAGCTAGCTGAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTTATCCTGAATAGTATAAGAAAGAAGAAAGCTAGCTGAAAATA  692

seq1  GGCAAGTGGGCAGACAAGGACGCACGCCTTTTCCTTCAGCTCTTCACTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGGGCAGACAAGGACGCACGCCTTTTCCTTCAGCTCTTCACTAT  742

seq1  GGATGTGGCTTGGCTTGATTCAAGCTCCTGACCCTGTAAAGCCCTCACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGCTTGGCTTGATTCAAGCTCCTGACCCTGTAAAGCCCTCACAG  792

seq1  TGACGGATTCAAACGTGGAGTTGTAAGCTTTTCCTCCTGAGTTGCTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGATTCAAACGTGGAGTTGTAAGCTTTTCCTCCTGAGTTGCTTTCT  842

seq1  GTCAGAATATTTTATCACAGCATCAGAAATGAAGTCAGAACAGACAGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATATTTTATCACAGCATCAGAAATGAAGTCAGAACAGACAGGAT  892

seq1  GGTCTCCCACCCTTGTGCTCGCTAGACTGAGCACAGGACCACATAACACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCACCCTTGTGCTCGCTAGACTGAGCACAGGACCACATAACACC  942

seq1  CAGGACTTTCTGACTCTAAGATTCAGTAAGTCTTACTCAGCCAAAGAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTTCTGACTCTAAGATTCAGTAAGTCTTACTCAGCCAAAGAAAA  992

seq1  ATAAAAGCTTAGTAACCTCAGAATCCCAGCTTCCCATCTTCCTTCCCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCTTAGTAACCTCAGAATCCCAGCTTCCCATCTTCCTTCCCAAG  1042

seq1  GTCTGTGGTGCTGGCTGAAGGGGAAAGAATTC  1081
      ||||||||||||||||||||||||||||||||
seq2  GTCTGTGGTGCTGGCTGAAGGGGAAAGAATTC  1074