BAC Information

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BAC

Clone NameB6Ng01-028H17
Chromosome1 (Build37)
Map Location 85,101,716 - 85,205,779
singlet/doubletdoublet
Overlap geneA530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneC130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028H17.bB6Ng01-028H17.g
ACCDH858946DH858947
length983558
definitionDH858946|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H17, 5' end.DH858947|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,204,796 - 85,205,779)(85,101,716 - 85,102,296)
sequence
gaattcctgctgggaaggcagcactagcttgggtggtacagtgcttgcct
accgtgtgcaaaattgtggggtcaataactggcagcatataaaaacagac
agggtaggacaagtctgtaatctcagcaggctgatgattgggggttcaag
gtcatcctcagctgcacgataagttcaaggccaacctgggctacctgaac
ccctgtctcaaataaataaaatgaaacaacaaaaaaagggatgtaggatg
gctcagtaggtggaggcactggctgccatgcctgacagccaggcccactc
ggtaaaaggaaaggactgattcgcaaacactatagcacagatagataaat
ataagaattactttcttaaaaattttaaagaaatcccaagaatgtgacgc
taggaaacgataaggatttatttatccagctagctagccttctgtttatc
aagtatatgaatacttttgactattttttttttattttgatttgacttgg
ttcagtttgtcaagacagggtttctctgtgtagccctggctgtcctggac
ctcacgtggtagaccaggctggcctcaaactcagagacctgcatgtctct
gcctctgccaagtgctgggattaaaaatgtatactaccagtgcccggcac
ttttgactattttggatgctacaaatacaatatctaacgaggctggcaag
gtctttgctctggtgggatttccacttgggggtggtggatacgttaacag
gaaacataaaatgatcctttgtcttttgccttatttcctccccaacatgg
gatttccccctgacaccagtgtgccttaactgttcagctcagagtattcc
aatccttttgggaagtatgactttcaaaatgacagtaaatgtcagttcat
ctcagcgagatgattgcaaaagggtctgggcagcttctgacatcttaagc
tgagactcagaaatcagactaagacatcagcac
cacagacagtgcaagggtagcaaagattaatgcagccatccctacgcctg
tcagattgataaccacaacaaaaatgtcttcaaagacagaaactgcaaac
actcagagacagatacctccacctgcttatatgaaaggcactgagccagt
gattaaccaccctatttattcccaaaagatacagcacactgctggtatca
ccagtggacttgaccaaatgtcacaggagaaatggtgctttcttaggaca
tctgcaggagcagaagtagccctgactgagtccctgttgggggcatcaca
caccttcgtctcatcttttctatttttattttgaattatgtatgtatgag
tctgtctcagtgtgcttcctgcacgcaagtacagtgtccatggaaggcag
aaaaggctgtctgatctggagttggcatgagtggcagttggaagccctag
gataggtgctggggacccaacccatgcctactactagggcaatacgagtg
cttaaacctgggccatctctcctatcgtgtgtgtgtgtgtgtgtgtgtgt
gtgagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85204796_85205779
seq2: B6Ng01-028H17.b_45_1027 (reverse)

seq1  GTGCTGGATGTCTTAGTCTGATTTCTGAGTCTCAGCTCTAAGATGTTCAG  50
      ||||| ||||||||||||||||||||||||||||||| ||||||| ||||
seq2  GTGCT-GATGTCTTAGTCTGATTTCTGAGTCTCAGCT-TAAGATG-TCAG  47

seq1  -AGCTGACCAGACCCTTTTGCAGTCATCTCGCTGAGATGAACTGACATTT  99
       ||||| ||||||||||||||| |||||||||||||||||||||||| ||
seq2  AAGCTGCCCAGACCCTTTTGCAATCATCTCGCTGAGATGAACTGACA-TT  96

seq1  TACTGTCATTTTGAAAGTCATACTTACCAAAAGGATTGGAATACTCTGAG  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACTGTCATTTTGAAAGTCATACTTCCCAAAAGGATTGGAATACTCTGAG  146

seq1  CTGAACAGTTAAGGCACACTGGTGTCAGGGGGAAAT-CCATGTTGGGGAG  198
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGAACAGTTAAGGCACACTGGTGTCAGGGGGAAATCCCATGTTGGGGAG  196

seq1  GAAATAAGGCAAAAGACAAAGGATCATTTTATGTTTCCTGTTAACGTATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGGCAAAAGACAAAGGATCATTTTATGTTTCCTGTTAACGTATC  246

seq1  CACCACCCCCAAGTGGAAATCCCACCAGAGCAAAGACCTTGCCAGCCTCG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCCCAAGTGGAAATCCCACCAGAGCAAAGACCTTGCCAGCCTCG  296

seq1  TTAGATATTGTATTTGTAGCATCCAAAATAGTCAAAAGTGCCGGGCACTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATTGTATTTGTAGCATCCAAAATAGTCAAAAGTGCCGGGCACTG  346

seq1  GTAGTATACATTTTTAATCCCAGCACTTGGCAGGGGCAGAGACATGCAGG  398
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAGTATACATTTTTAATCCCAGCACTTGGCAGAGGCAGAGACATGCAGG  396

seq1  TCTCTGAGTTCGAGGCCAGCCTGGTCTACCACGTGAGGTCCAGGACAGCC  448
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTTGAGGCCAGCCTGGTCTACCACGTGAGGTCCAGGACAGCC  446

seq1  AGGGCTACACAGAGAAACCCTGTCTTGACAAACTGAACCAAGTCAAATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAGAAACCCTGTCTTGACAAACTGAACCAAGTCAAATCA  496

seq1  AAAT-AAAAAAAAATAGTCAAAAGTATTCATATACTTGATAAACAGAAGG  547
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAAAAATAGTCAAAAGTATTCATATACTTGATAAACAGAAGG  546

seq1  CTAGCTAGCTGGATAAATAAATCCTTATAGTTTCCTAGGGTCACATTCTT  597
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CTAGCTAGCTGGATAAATAAATCCTTATCGTTTCCTAGCGTCACATTCTT  596

seq1  GGGATTTCTTTAAAATTTTTAAGAAAGTAATTCTTATATTTATCTATCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCTTTAAAATTTTTAAGAAAGTAATTCTTATATTTATCTATCTG  646

seq1  TGCTATAGTGTTTGCGAATCAGTCCTTTCCTTTTACCAAGTGGGCCTGGC  697
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCTATAGTGTTTGCGAATCAGTCCTTTCCTTTTACCGAGTGGGCCTGGC  696

seq1  TGTCAGGCATGGCAGCCAGTTCCTCCACCTACTGAGCCATCCTACATCCC  747
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTCAGGCATGGCAGCCAGTGCCTCCACCTACTGAGCCATCCTACATCCC  746

seq1  TTTTTTTGTTGTTTCATTTTATTTATTTGAGACAGGGGTTCAGGTAGCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTGTTTCATTTTATTTATTTGAGACAGGGGTTCAGGTAGCCC  796

seq1  AGGTTGGCCTTGAACTTATCGTGCAGCTGAGGATGACCTTGAACCCCCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCCTTGAACTTATCGTGCAGCTGAGGATGACCTTGAACCCCCAA  846

seq1  TCATCAGCCTGCTGAGATTACAGACTTGTCCTACCCTGTCTGTTTTTATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCCTGCTGAGATTACAGACTTGTCCTACCCTGTCTGTTTTTATA  896

seq1  TGCTGCCAGTTATTGACCCCACAGTTTTGCACACGGTAGGCAAGCACTGT  947
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCTGCCAGTTATTGACCCCACAATTTTGCACACGGTAGGCAAGCACTGT  946

seq1  ACCACCCATGCTCGTGCTGCCTTCCCAGCAGGAATTC  984
      |||||||| ||| ||||||||||||||||||||||||
seq2  ACCACCCAAGCTAGTGCTGCCTTCCCAGCAGGAATTC  983

seq1: chr1_85101716_85102296
seq2: B6Ng01-028H17.g_65_628

seq1  GAATTCCACAGACAGTGCAAGGGTAGCAAAGATCAATGCAGCCATCCCTA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCACAGACAGTGCAAGGGTAGCAAAGATTAATGCAGCCATCCCTA  50

seq1  CGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAAAGACAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAAAGACAGAAACT  100

seq1  GCAAATACTCAGAGACAGATACCTCCACCTGCTTATATGAAAGGCACTGA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACTCAGAGACAGATACCTCCACCTGCTTATATGAAAGGCACTGA  150

seq1  GCCAGTGATTAACCACCCTATTTATTCCCAAAAGACACAGCACACTGCTG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCAGTGATTAACCACCCTATTTATTCCCAAAAGATACAGCACACTGCTG  200

seq1  GTATCACTAGTGGACTTGATCAAATGTCACAGGAGAAATGGTGCTTTCTT  250
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  GTATCACCAGTGGACTTGACCAAATGTCACAGGAGAAATGGTGCTTTCTT  250

seq1  AGGACATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGC  300

seq1  ATCACACACCTTCATCTCATCTTTTCTATTTTTATTTTGAATTATGCATG  350
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  ATCACACACCTTCGTCTCATCTTTTCTATTTTTATTTTGAATTATGTATG  350

seq1  TATGAGTCTGTCTCAGTGTGCTTCCTGCACGCAAGTACAGTGTCGTGTCC  400
      |||||||||||||||||||||||||||||||||||||||     ||||||
seq2  TATGAGTCTGTCTCAGTGTGCTTCCTGCACGCAAGTACA-----GTGTCC  395

seq1  ATGGAAGGCAGAAAAGGCTGTCTGATCTGGAGTTGGCATGAGAGGCAGTT  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGGAAGGCAGAAAAGGCTGTCTGATCTGGAGTTGGCATGAGTGGCAGTT  445

seq1  GGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCATGCCCACTACTAGGG  500
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCATGCCTACTACTAGGG  495

seq1  CAATACGAGTGCTTAAACCTGGGCCATCTCTCCTATCGTGTGTGTGTGTG  550
      |||||||||||||||||||||||||||||||||||||            |
seq2  CAATACGAGTGCTTAAACCTGGGCCATCTCTCCTATC------------G  533

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGAGAGA  581
      |||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGAGAGA  564