BAC Information

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BAC

Clone NameB6Ng01-028L17
Chromosome1 (Build37)
Map Location 136,161,688 - 136,273,874
singlet/doubletdoublet
Overlap geneMyog, Ppfia4, LOC100042382, Tmem183a
Upstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
Downstream gene4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028L17.bB6Ng01-028L17.g
ACCDH859133DH859134
length1,1961,065
definitionDH859133|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L17, 5' end.DH859134|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,161,688 - 136,162,894)(136,272,797 - 136,273,874)
sequence
gaattcacagtgagactatgtgagagacatgggaaaagcccagcgcacac
acagggaaccagagtgtaagagaagacgaaatacacacaggatctagaga
tacctagagtgttccaaaatgaaaccccaggctcaagaatgtctgtgaca
gtcccctgccccagaaatacctaggtaccgcatagtaggactaggaagaa
ccctaatggaggggaatccttaagaacagaaagccagatattgtgactgt
ccggtgacagaaataaaatggcatttttaaagtgttcaacatgaacataa
cgggggttggagaacgcagggctggagaatggaggtctggggagatggct
cagtaaagacaacttgctcttgcagaagacccaggtgtggctcatagctg
cttgtaaccccagctgcagggtacctgcctccatgggcatgcgcagacac
atggtacgcatacaggcaaacaggcaaacacatgtaaaataaaataaaat
aagttaagataaatctttaaaatgctgaccaccagtagccataaacatag
aagagaataaatggcaaaataataattaataataataataaccttaaaag
atacagtttaaaaatcttcaagcaaggtagagtttatcacttacagacca
acacttaatgaatacttgagaataaaagctagccacctaattggaagctg
gcagagcaggcaaagacatccaagaccaagaggaataaagtatgagcacc
tcacaaacagtgcccctaagaaagtcatgtcttggaagctgttaccatgg
tgagctggccacagggcctgtgggtttggtcctcagtgagccctcctcct
tcctcttcccagagccttgcagtgccagagccattcattcacagcctgtt
tatgccactgctcctggggcagagagaagcagctgtcccgcacagctccc
gaagagtgctggcttttaaaggtccctgcctgcttctgctgctgctgggg
aatctctgggccaggcttccagctcctgacagtttcccactacctcagcc
aagatttcctaggtctgtctaaacaattaaatctgggtggctttatgtat
agaaacatgaattcatgtatgtacatgtagccctaagaattgtgatatgc
ctagaaggggtgtgcgttagtgcaagatctccatcaccttgatgaa
gaattccaggccagccagggctacatggtgagactctgtctcaacaaaca
acaaacaaataaatggaaaagaaaacatgatgttgctaaattcctgtcac
tttaatgaatctagggttgtagtgtcccctgtagcaatgttccttaaaga
actaattttgcaatgagtcttctttcagtggttgatactgcttttctaaa
gtcatttgctcagaaggttattcccccactctctgttctttctgtgtgat
tgcacgttccctctcctttcctcttccccttcttggtccctattatggct
ccccaggattcctgttgagaggggttggtttagcctcagctccagggcac
aggagacttggcacttgggtttaggcttctcatggagctgggtgggtcca
atttgcttggagaggaggatgatcgtgccagctgctgaggggacactgta
aaggcctcctcttgcatttgccttcagtggtgggagggggctttcctagg
gggagcaaggctggccacctactacaagcaggtgggttgatggggccact
ccttgggtgatggttgtcctgaggaacctgggcatttgtttgagctcttg
cctgtctgctgcaggattcaatgctgtggctctccaagacaacatggatg
aagagtcaactagtacaggagtgtttctcagacaagaactaggtggagtt
tgaagtcgtggaagacaatacaatcgttcacactgcccatttaaaatgtt
cgttttgttttgtttttcaagataggatcactctgtagcctttgctaccc
tgggaactcactctgtagaccaggctagcctcaaactcagagatctgact
tcctttgcctcggagtgtggtatgcagattggaggcaggtgtgattctgc
ttcctcaggtccttcctcagcccctcagctatccaggcacagctgcacac
cagctgaaggatgcagtgggagtctggacagggggctctgcaacagttct
taatgatcttccctgaacagctgggtgcgacaccttatttgggaacaagg
gctattattgaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136161688_136162894
seq2: B6Ng01-028L17.b_48_1243

seq1  GAATTCACAGTGAGACTATGTGAGAGACATGGGAAAAGCCCAGCGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGAGACTATGTGAGAGACATGGGAAAAGCCCAGCGCACAC  50

seq1  ACAGGGAACCAGAGTGTAAGAGAAGACGAAATACACACAGGATCTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAACCAGAGTGTAAGAGAAGACGAAATACACACAGGATCTAGAGA  100

seq1  TACCTAGAGTGTTCCAAAATGAAACCCCAGGCTCAAGAATGTCTGTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGAGTGTTCCAAAATGAAACCCCAGGCTCAAGAATGTCTGTGACA  150

seq1  GTCCCCTGCCCCAGAAATACCTAGGTACCGCATAGTAGGACTAGGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGCCCCAGAAATACCTAGGTACCGCATAGTAGGACTAGGAAGAA  200

seq1  CCCTAATGGAGGGGAATCCTTAAGAACAGAAAGCCAGATATTGTGACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGGAGGGGAATCCTTAAGAACAGAAAGCCAGATATTGTGACTGT  250

seq1  CCGGTGACAGAAATAAAATGGCATTTTTAAAGTGTTCAACATGAACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGACAGAAATAAAATGGCATTTTTAAAGTGTTCAACATGAACATAA  300

seq1  CGGGGGTTGGAGAACGCAGGGCTGGAGAATGGAGGTCTGGGGAGATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGTTGGAGAACGCAGGGCTGGAGAATGGAGGTCTGGGGAGATGGCT  350

seq1  CAGTAAAGACAACTTGCTCTTGCAGAAGACCCAGGTGTGGCTCATAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGACAACTTGCTCTTGCAGAAGACCCAGGTGTGGCTCATAGCTG  400

seq1  CTTGTAACCCCAGCTGCAGGGTACCTGCCTCCATGGGCATGCGCAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAACCCCAGCTGCAGGGTACCTGCCTCCATGGGCATGCGCAGACAC  450

seq1  ATGGTACGCATACAGGCAAACAGGCAAACACATGTAAAATAAAATAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACGCATACAGGCAAACAGGCAAACACATGTAAAATAAAATAAAAT  500

seq1  AAGTTAAGATAAATCTTTAAAATGCTGACCACCAGTAGCCATAAACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGATAAATCTTTAAAATGCTGACCACCAGTAGCCATAAACATAG  550

seq1  AAGAGAATAAATGGCAAAATAATAATTAATAATAATAATAACCTTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAAATGGCAAAATAATAATTAATAATAATAATAACCTTAAAAG  600

seq1  ATACAGTTTAAAAATCTTCAAGCAAGGTAGAGTTTATCACTTACAGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTTAAAAATCTTCAAGCAAGGTAGAGTTTATCACTTACAGACCA  650

seq1  ACACTTAATGAATACTTGAGAATAAAAGCTAGCCACCTAATTGGAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAATGAATACTTGAGAATAAAAGCTAGCCACCTAATTGGAAGCTG  700

seq1  GCAGAGCAGGCAAAGACATCCAAGACCAAGAGGAATAAAGTATGAGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGGCAAAGACATCCAAGACCAAGAGGAATAAAGTATGAGCACC  750

seq1  TCACAAACAGTGCCCCTAAGAAAGTCATGTCTTGGAAGCTGTTACCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACAGTGCCCCTAAGAAAGTCATGTCTTGGAAGCTGTTACCATGG  800

seq1  TGAGCTGGCCACAGGGCCTGTGGGTTTGGTCCTCAGTGAGCCCTCCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGCCACAGGGCCTGTGGGTTTGGTCCTCAGTGAGCCCTCCTCCT  850

seq1  TCCTCTTCCCAGAGCCTTGCAGTGCCAGAGCCATTCATTCACAGCCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCCAGAGCCTTGCAGTGCCAGAGCCATTCATTCACAGCCTGTT  900

seq1  TATGCCACTGCTCCTGGGGCAGAGAGAAGCAGCTGTCCCGCACAGCTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACTGCTCCTGGGGCAGAGAGAAGCAGCTGTCCCGCACAGCTCCC  950

seq1  GAAGAGTGCTGGCTTTTAAAGGTCCCTGCCTGCTTCTGCTGCTGCTGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGCTGGCTTTTAAAGGTCCCTGCCTGCTTCTGCTGCTGCTGGGG  1000

seq1  AATCTCTGGGCCAGGCTTCCAGCTCCTGACAGTTTCCCACTACCTCAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATCTCTGGGCCAGGCTTCCAGCTCCTGACAGTTTCCCACTACCTCA-GC  1049

seq1  CAAGATTTCCTAAGGTCTGTCTAAAAACAATTATATCTTGTGTGGCTTTA  1100
      ||||||||||| ||||||||||  ||||||||| ||| || |||||||||
seq2  CAAGATTTCCT-AGGTCTGTCT--AAACAATTAAATC-TGGGTGGCTTTA  1095

seq1  TGTATTAAGATACATG-ATTCATGTATGTACATGTAGCCCTAAGATATGT  1149
      |||||  ||| ||||| ||||||||||||||||||||||||||||  |||
seq2  TGTAT--AGAAACATGAATTCATGTATGTACATGTAGCCCTAAGAATTGT  1143

seq1  GATAATGGC-ATAAGAAGGTGTGCGTAAAGTGGCAAGAGATCTTCATCAC  1198
      ||| ||| | | |||  |||||||||  ||| |||  |||||| ||||||
seq2  GAT-ATGCCTAGAAG-GGGTGTGCGT-TAGT-GCA--AGATCTCCATCAC  1187

seq1  CTTGATGAA  1207
      |||||||||
seq2  CTTGATGAA  1196

seq1: chr1_136272797_136273874
seq2: B6Ng01-028L17.g_66_1130 (reverse)

seq1  AGGTTCATATATAGCCCTTGTTTACCCCAAATAAAGTGTCTGCACACCAG  50
      |||||||   ||||||||||||   ||||||||| ||||| |||| ||||
seq2  AGGTTCAATAATAGCCCTTGTT---CCCAAATAAGGTGTC-GCAC-CCAG  45

seq1  CTGTTTCAGGGAAGATCATGTAAGAACTGTTGCAGAGCCCACCTGGTCCA  100
      ||| ||||||||||||||| |||||||||||||||||||| ||| |||||
seq2  CTG-TTCAGGGAAGATCAT-TAAGAACTGTTGCAGAGCCC-CCT-GTCCA  91

seq1  GACTCCCACTGCATCCTTCCAGCCTGGTGTGCAGCTGTGCCTGGATAGGC  150
      |||||||||||||||||| ||| |||||||||||||||||||||||| ||
seq2  GACTCCCACTGCATCCTT-CAG-CTGGTGTGCAGCTGTGCCTGGATA-GC  138

seq1  TGAGGGGCTGAGGAAGGAACCTGAGGAAGCAGAATCACACCTGGCCTCCA  200
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  TGAGGGGCTGAGGAAGG-ACCTGAGGAAGCAGAATCACACCT-GCCTCCA  186

seq1  ATCTGCATACCACACTCCGAGGCAAAGGGAGTCAGATCTCTGAGTTTGAG  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCTGCATACCACACTCCGAGGCAAAGGAAGTCAGATCTCTGAGTTTGAG  236

seq1  GCTAGCCTGGTCTACAGAGTGAGTT-CCAGGGTAGCAAAGGCTACAGAGT  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTAGCCTGGTCTACAGAGTGAGTTCCCAGGGTAGCAAAGGCTACAGAGT  286

seq1  GATCCTATCTTGAAAAACAAAACAAAACGAACATTTTAAATGGGCAGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATCTTGAAAAACAAAACAAAACGAACATTTTAAATGGGCAGTGT  336

seq1  GAACGATTGTATTGTCTTCCACGACTTCAAACTCCACCTAGTTCTTGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGATTGTATTGTCTTCCACGACTTCAAACTCCACCTAGTTCTTGTCT  386

seq1  GAGAAACACTCCTGTACTAGTTGACTCTTCATCCATGTTGTCTTGGAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACACTCCTGTACTAGTTGACTCTTCATCCATGTTGTCTTGGAGAG  436

seq1  CCACAGCATTGAATCCTGCAGCAGACAGGCAAGAGCTCAAACAAATGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCATTGAATCCTGCAGCAGACAGGCAAGAGCTCAAACAAATGCCC  486

seq1  AGGTTCCTCAGGACAACCATCACCCAAGGAGTGGCCCCATCAACCCACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTCAGGACAACCATCACCCAAGGAGTGGCCCCATCAACCCACCT  536

seq1  GCTTGTAGTAGGTGGCCAGCCTTGCTCCCCCTAGGAAAGCCCCCTCCCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGTAGGTGGCCAGCCTTGCTCCCCCTAGGAAAGCCCCCTCCCAC  586

seq1  CACTGAAGGCAAATGCAAGAGGAGGCCTTTACAGTGTCCCCTCAGCAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGGCAAATGCAAGAGGAGGCCTTTACAGTGTCCCCTCAGCAGCT  636

seq1  GGCACGATCATCCTCCTCTCCAAGCAAATTGGACCCACCCAGCTCCATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGATCATCCTCCTCTCCAAGCAAATTGGACCCACCCAGCTCCATGA  686

seq1  GAAGCCTAAACCCAAGTGCCAAGTCTCCTGTGCCCTGGAGCTGAGGCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTAAACCCAAGTGCCAAGTCTCCTGTGCCCTGGAGCTGAGGCTAA  736

seq1  ACCAACCCCTCTCAACAGGAATCCTGGGGAGCCATAATAGGGACCAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCCTCTCAACAGGAATCCTGGGGAGCCATAATAGGGACCAAGAA  786

seq1  GGGGAAGAGGAAAGGAGAGGGAACGTGCAATCACACAGAAAGAACAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGGAAAGGAGAGGGAACGTGCAATCACACAGAAAGAACAGAGA  836

seq1  GTGGGGGAATAACCTTCTGAGCAAATGACTTTAGAAAAGCAGTATCAACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAATAACCTTCTGAGCAAATGACTTTAGAAAAGCAGTATCAACC  886

seq1  ACTGAAAGAAGACTCATTGCAAAATTAGTTCTTTAAGGAACATTGCTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGAAGACTCATTGCAAAATTAGTTCTTTAAGGAACATTGCTACA  936

seq1  GGGGACACTACAACCCTAGATTCATTAAAGTGACAGGAATTTAGCAACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACACTACAACCCTAGATTCATTAAAGTGACAGGAATTTAGCAACAT  986

seq1  CATGTTTTCTTTTCCATTTATTTGTTTGTTGTTTGTTGAGACAGAGTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCTTTTCCATTTATTTGTTTGTTGTTTGTTGAGACAGAGTCTC  1036

seq1  ACCATGTAGCCCTGGCTGGCCTGGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  ACCATGTAGCCCTGGCTGGCCTGGAATTC  1065