BAC Information

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BAC

Clone NameB6Ng01-029E08
Chromosome1 (Build37)
Map Location 50,797,904 - 50,940,896
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029E08.bB6Ng01-029E08.g
ACCDH859519DH859520
length1,1641,040
definitionDH859519|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E08, 5' end.DH859520|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,797,904 - 50,799,095)(50,939,849 - 50,940,896)
sequence
gaattccagtcatctgtaaccaactaaactagcaacaattaaataggatg
cttgtcattgtttatctgtgtaccttgctttctatccacccattcctcat
taatacttactggaactctgggtaaattattgcactgaaatttaagtatc
agtccaataccaccaaaatattaaaatcaaagaacttaagcttctgcaaa
ctaccaagtgactatatgttctcttagatacttatagacattttagaaat
gctttgtgttatgattattctctagtttgctgaattcacattttgaaaat
ttttaaatgaagctagtatatattggaaaattcacattagtaaaatgaag
aacaaaataagtggcctctcctagaaggataaggaaagaggcaagaaagg
gggaagaaaaagaagaaagtggaagaaagttttattccttttgaaatctt
gctaaagaaaataagctaacactgagtttgcagtacagaaaactgtgaca
ggatgtatagaaaaatttaaaacaaagaaaacacaacataaaactgttac
agaatatatgaattttaatttgcaatagttactttttattgtgtagcaaa
atgccctataaaagcaatttaaggaaataaggatttagatctgctcatag
attaagggtccatcatggtgagggggcaccatgttggcatgatcttgaga
ttggtggccacattccatccccaggcaggaaggagaaggagaggaacagg
gacaggaagaaagagggaggagacccacgctcacccccctttgtttcctt
ctattaaatctccaggctttgttcatgaaataatcactctaccctaattt
agtgtgggtcttcttagttcaaaacctaaccccgaaacttcatgacaagt
gtgcccaaaatgtcttcttctaatcccaatcctaatttttaattcagaaa
ttctaaattctttcagttggtaatcatatatgatcacacattctaatttg
aaaataatatatccaaagtcatatactggaggggaatgatatatttagct
ctagtaatgtttatttgataatacttttataaagttttgtgagaggaaat
atttataataacattaccagaaaaagcaatacccaaatttgtcttatttt
atttacgtactctg
gaattcttttcttgttctagtaaatgttgttaaatcaagctgttctcact
acaatggtcttacttctgtttttctatttgttccttgaattgtcagtacc
aaggcacttagaatatatgaattcctaaaaacaaaattcttcagtcagta
ttacttacattaagtattcatggttttattctttccaaatacttttacag
cttggtgttctgtcctgatagaaataattcctccaagtagattaatcact
aatcagcatacgcagggtaagaaagtacagtggggacaccctccattctg
ctctccatggtccccaagagggatagaaggaggtttctaaattctccaga
aatgtagaatactacttcattatctcacatgttttacttttcctgggaga
atacttctttcaacttttttattagatattttctttatgtacatttcaaa
tattataccctttcctggattcccctcagaaacccccctatcatctcccc
tctccctctgctcatcaacctacccactcctgctttctggccctgatatt
tccctatactggggcatagaaccttcacaggaccaaggttctctcttccc
attgatgaccaactaggccatcttttgatactagagccatgagtcccacc
atgggttttctttgattggtggtttagtcccagggagctctgggggtact
gattagttcatattgttgttcttcctatggggttgcaaatcccttcagct
ccttgggtactttctctagcttcatcattgaggaccctgtgctcagtcta
acggatggctgtgagcaaccacttctgtatttgtcaggcactggtagagc
ctctcaggagacagctatatctgtcagcaagctcttgttggcatccacaa
tagggtctgggtttgggtgtataactgaaatcggtgaagatagtacattc
tttaaattatctctagaaacaataaggaggcgtggggctatttcatcatt
atattcattaagaatactatattcattaaagagaactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50797904_50799095
seq2: B6Ng01-029E08.b_47_1210

seq1  GAATTCCAGTCATCTGTAACCAACTAAACTAGCAACAATTAAATAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCATCTGTAACCAACTAAACTAGCAACAATTAAATAGGATG  50

seq1  CTTGTCATTGTTTATCTGTGTACCTTGCTTTCTATCCACCCATTCCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATTGTTTATCTGTGTACCTTGCTTTCTATCCACCCATTCCTCAT  100

seq1  TAATACTTACTGGAACTCTGGGTAAATTATTGCACTGAAATTTAAGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTACTGGAACTCTGGGTAAATTATTGCACTGAAATTTAAGTATC  150

seq1  AGTCCAATACCACCAAAATATTAAAATCAAAGAACTTAAGCTTCTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATACCACCAAAATATTAAAATCAAAGAACTTAAGCTTCTGCAAA  200

seq1  CTACCAAGTGACTATATGTTCTCTTAGATACTTATAGACATTTTAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGTGACTATATGTTCTCTTAGATACTTATAGACATTTTAGAAAT  250

seq1  GCTTTGTGTTATGATTATTCTCTAGTTTGCTGAATTCACATTTTGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTTATGATTATTCTCTAGTTTGCTGAATTCACATTTTGAAAAT  300

seq1  TTTTAAATGAAGCTAGTATATATTGGAAAATTCACATTAGTAAAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGAAGCTAGTATATATTGGAAAATTCACATTAGTAAAATGAAG  350

seq1  AACAAAATAAGTGGCCTCTCCTAGAAGGATAAGGAAAGAGGCAAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATAAGTGGCCTCTCCTAGAAGGATAAGGAAAGAGGCAAGAAAGG  400

seq1  GGGAAGAAAAAGAAGAAAGTGGAAGAAAGTTTTATTCCTTTTGAAATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAAAGAAGAAAGTGGAAGAAAGTTTTATTCCTTTTGAAATCTT  450

seq1  GCTAAAGAAAATAAGCTAACACTGAGTTTGCAGTACAGAAAACTGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGAAAATAAGCTAACACTGAGTTTGCAGTACAGAAAACTGTGACA  500

seq1  GGATGTATAGAAAAATTTAAAACAAAGAAAACACAACATAAAACTGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTATAGAAAAATTTAAAACAAAGAAAACACAACATAAAACTGTTAC  550

seq1  AGAATATATGAATTTTAATTTGCAATAGTTACTTTTTATTGTGTAGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATATGAATTTTAATTTGCAATAGTTACTTTTTATTGTGTAGCAAA  600

seq1  ATGCCCTATAAAAGCAATTTAAGGAAATAAGGATTTAGATCTGCTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTATAAAAGCAATTTAAGGAAATAAGGATTTAGATCTGCTCATAG  650

seq1  ATTAAGGGTCCATCATGGTGAGGGGGCACCATGTTGGCATGATCTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGTCCATCATGGTGAGGGGGCACCATGTTGGCATGATCTTGAGA  700

seq1  TTGGTGGCCACATTCCATCCCCAGGCAGGAAGGAGAAGGAGAGGAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCCACATTCCATCCCCAGGCAGGAAGGAGAAGGAGAGGAACAGG  750

seq1  GACAGGAAGAAAGAGGGAGGAGACCCACGCTCACCCCCCTTTGTTTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAGAAAGAGGGAGGAGACCCACGCTCACCCCCCTTTGTTTCCTT  800

seq1  CTATTAAATCTCCAGGCTTTGTTCATGAAATAATCACTCTACCCTAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAATCTCCAGGCTTTGTTCATGAAATAATCACTCTACCCTAATTT  850

seq1  AGTGTGGGTCTTCTTAGTTCAAAACCTAACCCCGAAACTTCATGACAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGTCTTCTTAGTTCAAAACCTAACCCCGAAACTTCATGACAAGT  900

seq1  GTGCCCAAAATGTCTTCTTCTAAATCCCAAATCCTAAATTTTTAATTCAG  950
      ||||||||||||||||||||| |||||| |||||| ||||||||||||||
seq2  GTGCCCAAAATGTCTTCTTCT-AATCCC-AATCCT-AATTTTTAATTCAG  947

seq1  AAATTCTAAATTCTTTCAAGTTGGTAATCAATATTAATGATCACACAATT  1000
      ||||||||||||||||| ||||||||||| ||||  |||||||||| |||
seq2  AAATTCTAAATTCTTTC-AGTTGGTAATC-ATAT--ATGATCACAC-ATT  992

seq1  CTAATTTGAAAATAAATATAATCCAAAAGTCATTATACTGAGGGGGAAAT  1050
      ||||||||||||| ||||| |||| ||||||| ||||||| | ||| |||
seq2  CTAATTTGAAAAT-AATAT-ATCC-AAAGTCA-TATACTG-GAGGGGAAT  1037

seq1  GATATATTTAGCTCTAGTAAATGTTTATTTTGATAAATACTTTTATAAAA  1100
      |||||||||||||||||| |||||||| |||||| ||||||||||| |||
seq2  GATATATTTAGCTCTAGT-AATGTTTA-TTTGAT-AATACTTTTAT-AAA  1083

seq1  GTTTTGTGAGAAGGAAATATTTATAATAAACATTTACACAAGAAAATAGC  1150
      |||||||||| |||||||||||||||| ||||||   || |||||| |||
seq2  GTTTTGTGAG-AGGAAATATTTATAAT-AACATT---ACCAGAAAA-AGC  1127

seq1  AAAATACACAAAATTTTGTCTTATTTATTTTACATTACTCTG  1192
        ||||| ||||  ||||||||||||  |||||  |||||||
seq2  --AATACCCAAA--TTTGTCTTATTTTATTTAC-GTACTCTG  1164

seq1: chr1_50939849_50940896
seq2: B6Ng01-029E08.g_66_1105 (reverse)

seq1  TTCATGTTCTCTTTTTAATGAATTATGTATTCATAATG-ATATAATGATG  49
      |||| ||||||  ||||||||||   |||||| ||||| |||||||||| 
seq2  TTCA-GTTCTC--TTTAATGAATATAGTATTCTTAATGAATATAATGAT-  46

seq1  GAATTAGCCCCACGCCTCTTTATTGTTTTCTAGAGATATTTTAAAGAATG  99
      ||| |||||||||||||| |||||| |||||||||||| |||||||||||
seq2  GAAATAGCCCCACGCCTCCTTATTG-TTTCTAGAGATAATTTAAAGAATG  95

seq1  TACTTATCTTCACCGATTTTCAGTTATACAACCCAAACCCAGACCCTATT  149
      ||| |||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TAC-TATCTTCACCGA-TTTCAGTTATAC-ACCCAAACCCAGACCCTATT  142

seq1  GTGGATGCCAACAAGAGCTTGCTGACAGGATATAGCTGTCTCCTGAGAGG  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGGATGCCAACAAGAGCTTGCTGACA-GATATAGCTGTCTCCTGAGAGG  191

seq1  CTCTACCAGTGCCTGACAAATACAGAAGTGGTTGCTCACAGCCATCCGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCAGTGCCTGACAAATACAGAAGTGGTTGCTCACAGCCATCCGTT  241

seq1  AGACTGAGCACAGGGTCCTCAATGATGAAGCTAGAGAAAGTACCCAAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGCACAGGGTCCTCAATGATGAAGCTAGAGAAAGTACCCAAGGA  291

seq1  GCTGAAGGGATTTGCAACCCCATAGGAAGAACAACAATATGAACTAATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGGATTTGCAACCCCATAGGAAGAACAACAATATGAACTAATCA  341

seq1  GTACCCCCAGAGCTCCCTGGGACTAAACCACCAATCAAAGAAAACCCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCCAGAGCTCCCTGGGACTAAACCACCAATCAAAGAAAACCCATG  391

seq1  GTGGGACTCATGGCTCTAGTATCAAAAGATGGCCTAGTTGGTCATCAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACTCATGGCTCTAGTATCAAAAGATGGCCTAGTTGGTCATCAATG  441

seq1  GGAAGAGAGAACCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGAACCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGAA  491

seq1  ATATCAGGGCCAGAAAGCAGGAGTGGGTAGGTTGATGAGCAGAGGGAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGGCCAGAAAGCAGGAGTGGGTAGGTTGATGAGCAGAGGGAGAG  541

seq1  GGGAGATGATAGGGGGGTTTCTGAGGGGAATCCAGGAAAGGGTATAATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGATAGGGGGGTTTCTGAGGGGAATCCAGGAAAGGGTATAATAT  591

seq1  TTGAAATGTACATAAAGAAAATATCTAATAAAAAAGTTGAAAGAAGTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTACATAAAGAAAATATCTAATAAAAAAGTTGAAAGAAGTATT  641

seq1  CTCCCAGGAAAAGTAAAACATGTGAGATAATGAAGTAGTATTCTACATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGAAAAGTAAAACATGTGAGATAATGAAGTAGTATTCTACATTT  691

seq1  CTGGAGAATTTAGAAACCTCCTTCTATCCCTCTTGGGGACCATGGAGAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATTTAGAAACCTCCTTCTATCCCTCTTGGGGACCATGGAGAGC  741

seq1  AGAATGGAGGGTGTCCCCACTGTACTTTCTTACCCTGCGTATGCTGATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAGGGTGTCCCCACTGTACTTTCTTACCCTGCGTATGCTGATTA  791

seq1  GTGATTAATCTACTTGGAGGAATTATTTCTATCAGGACAGAACACCAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAATCTACTTGGAGGAATTATTTCTATCAGGACAGAACACCAAGC  841

seq1  TGTAAAAGTATTTGGAAAGAATAAAACCATGAATACTTAATGTAAGTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGTATTTGGAAAGAATAAAACCATGAATACTTAATGTAAGTAAT  891

seq1  ACTGACTGAAGAATTTTGTTTTTAGGAATTCATATATTCTAAGTGCCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGAAGAATTTTGTTTTTAGGAATTCATATATTCTAAGTGCCTTG  941

seq1  GTACTGACAATTCAAGGAACAAATAGAAAAACAGAAGTAAGACCATTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGACAATTCAAGGAACAAATAGAAAAACAGAAGTAAGACCATTGTA  991

seq1  GTGAGAACAGCTTGATTTAACAACATTTACTAGAACAAGAAAAGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACAGCTTGATTTAACAACATTTACTAGAACAAGAAAAGAATTC  1040