BAC Information

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BAC

Clone NameB6Ng01-029M15
Chromosome1 (Build37)
Map Location 18,656,980 - 18,821,504
singlet/doubletdoublet
Overlap geneLOC383499
Upstream geneCrispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M15.bB6Ng01-029M15.g
ACCDH859886DH859887
length1,1991,039
definitionDH859886|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M15, 5' end.DH859887|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,656,980 - 18,658,181)(18,820,459 - 18,821,504)
sequence
gaattcctctgctgcttgcagggacttctaaattagtactgatgttcaca
gtaaagcagcattcacttggatttgtttcatataaattcattgatcatga
ttgttaaagactaagggaaattacagttaatcttcagtaagagacccata
ctgtctagcataaattcaggaagatgaatgtcagaataaagtaggtctta
gtgtacactaaatttactgttaaggaaagatatctactagaaaccccagg
taaacaatcactatctctgcagctcagttccttagagacttcatcccttt
gttctcaaaataaggaagatatttttctcaggagcttgatattaaatata
tagtcctcagatctctagtttctttacatgaaaagtttaatatatgcact
tctacattgtgaataaaagaaaaactataaagagtgaatatatttccaag
tagccatgttcctaagggctttattatgaaatgattgttcataaaaatgt
actgcagattgtacttctgtctaaatagcccttctatctcaaaaaattat
gaactagcatttcatgctaagatatacaaatgacattgtgtctgcaagtt
tgcatatgtgtgtgtgtatataccatcatgaaggagaacaacatttcttc
tttactttttaaatgccttcaaatttgatattttcaagttcagagtcaca
gattgtactagctatttagagaaactcaatgcatcactgcataagtctca
gttttccatacactggatttcttttaaaagctatgtggaacatgttgcct
cttaaataacaaaagagtcaaacaccaaaataccttgaacttgaagggag
aacagtattggctgaagcactgagttcctttcaaagatttagagaccatc
acgagcactggataaattaaccttttcccatatgtgagttcttgcattca
gtgagtcagattttgcctagatcatatctcttagtatgacttcccagaat
ataccaagaaaaaaaaaagagaactgttttgtgtttattcaccccaaagg
tcctcacatatttgtccttatattcaaatggtggcaatgtaaaccacact
gaagaatgatggctgcttatctttcccgcaagttgcttttctttctggcc
tgccccctaactggggtgcctgccaattcccatcctggcatcattaact
gaattcatctgttcctgctactctgagcagggaaatgctttaaatatgag
gtctgtgagttgaatgagaatgtttactggcattttccacaaggatcagg
aacttttcttctggtctagcaggaattcaagccctgctgctcaccagctg
ctactgggatagaagcttacttgctgttcctttgtcatggacttatcatt
cccaagaacagcctttgtcactcaagagatttcagtcaaggagagctact
ccacctagcctctctccttagaagcttccctcacccgtccaagtgggaga
gcctgtactggagggtacctctcctcagaccaacaagagcttctatgcca
actgatttatgctccactttccacttaatatctttctaaagacaatggat
tttattttgcaagtaaggacaacagaaagttttatggttaagaacacatg
ttggcactgtgaagtactgatttgagtatttgcttagaaaattatatatt
ttatttttacttggattcagtacataatatgactaactatacatactatg
tactttttatttttatttttttaatttattttttattagatattctcttc
atttacatttcaaatgctatcctgaaagtcccctataccctcccccctgc
cctgctcccacaacccacccactccctcttcctggccctggcattcccct
gtactgggggcatataatcttcacaaaaccaagggtctctcctcctattg
atggcctactaggccatcctctgctacatatgcaacagagatacagctct
gcagggagggggtggggtactggttagttcacattgttgttcctcctata
gagttgcagaccccttcagctccttgggtactttccctagctcatttatt
gggggccctgtttcaatcaatagatgactgtgagcatccactctgtattg
ctggcactgccatcgcctcacaagagacagcttatcaggtctgtaaagca
aatcttgctgtctatgcatacgtgtctgggttggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18656980_18658181
seq2: B6Ng01-029M15.b_48_1246

seq1  GAATTCCTCTGCTGCTTGCAGGGACTTCTAAATTAGTACTGATGTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGCTGCTTGCAGGGACTTCTAAATTAGTACTGATGTTCACA  50

seq1  GTAAAGCAGCATTCACTTGGATTTGTTTCATATAAATTCATTGATCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCAGCATTCACTTGGATTTGTTTCATATAAATTCATTGATCATGA  100

seq1  TTGTTAAAGACTAAGGGAAATTACAGTTAATCTTCAGTAAGAGACCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAGACTAAGGGAAATTACAGTTAATCTTCAGTAAGAGACCCATA  150

seq1  CTGTCTAGCATAAATTCAGGAAGATGAATGTCAGAATAAAGTAGGTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGCATAAATTCAGGAAGATGAATGTCAGAATAAAGTAGGTCTTA  200

seq1  GTGTACACTAAATTTACTGTTAAGGAAAGATATCTACTAGAAACCCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACTAAATTTACTGTTAAGGAAAGATATCTACTAGAAACCCCAGG  250

seq1  TAAACAATCACTATCTCTGCAGCTCAGTTCCTTAGAGACTTCATCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATCACTATCTCTGCAGCTCAGTTCCTTAGAGACTTCATCCCTTT  300

seq1  GTTCTCAAAATAAGGAAGATATTTTTCTCAGGAGCTTGATATTAAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAAATAAGGAAGATATTTTTCTCAGGAGCTTGATATTAAATATA  350

seq1  TAGTCCTCAGATCTCTAGTTTCTTTACATGAAAAGTTTAATATATGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTCAGATCTCTAGTTTCTTTACATGAAAAGTTTAATATATGCACT  400

seq1  TCTACATTGTGAATAAAAGAAAAACTATAAAGAGTGAATATATTTCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTGTGAATAAAAGAAAAACTATAAAGAGTGAATATATTTCCAAG  450

seq1  TAGCCATGTTCCTAAGGGCTTTATTATGAAATGATTGTTCATAAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGTTCCTAAGGGCTTTATTATGAAATGATTGTTCATAAAAATGT  500

seq1  ACTGCAGATTGTACTTCTGTCTAAATAGCCCTTCTATCTCAAAAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGATTGTACTTCTGTCTAAATAGCCCTTCTATCTCAAAAAATTAT  550

seq1  GAACTAGCATTTCATGCTAAGATATACAAATGACATTGTGTCTGCAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGCATTTCATGCTAAGATATACAAATGACATTGTGTCTGCAAGTT  600

seq1  TGCATATGTGTGTGTGTATATACCATCATGAAGGAGAACAACATTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTGTGTGTGTATATACCATCATGAAGGAGAACAACATTTCTTC  650

seq1  TTTACTTTTTAAATGCCTTCAAATTTGATATTTTCAAGTTCAGAGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTAAATGCCTTCAAATTTGATATTTTCAAGTTCAGAGTCACA  700

seq1  GATTGTACTAGCTATTTAGAGAAACTCAATGCATCACTGCATAAGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTACTAGCTATTTAGAGAAACTCAATGCATCACTGCATAAGTCTCA  750

seq1  GTTTTCCATACACTGGATTTCTTTTAAAAGCTATGTGGAACATGTTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCATACACTGGATTTCTTTTAAAAGCTATGTGGAACATGTTGCCT  800

seq1  CTTAAATAACAAAAGAGTCAAACACCAAAATACCTTGAACTTGAAGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAACAAAAGAGTCAAACACCAAAATACCTTGAACTTGAAGGGAG  850

seq1  AACAGTATTGGCTGAAGCACTGAGTTCCTTTCAAAGATTTAGAGACCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTGGCTGAAGCACTGAGTTCCTTTCAAAGATTTAGAGACCATC  900

seq1  AGGAGCACTGGATAAATTAACCTTTTCCCATATGTGAGTTCTTGCATTCA  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCACTGGATAAATTAACCTTTTCCCATATGTGAGTTCTTGCATTCA  950

seq1  GTGAGTCAGATTTTGCCTAGATCATATCTCTTAGTATGACTTCACAGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGAGTCAGATTTTGCCTAGATCATATCTCTTAGTATGACTTCCCAGAAT  1000

seq1  ATACCAAGAAAAAAAAAAGAAGACTGTTTTGTGTTTATACACCCCAAAAG  1050
      ||||||||||||||||||||  |||||||||||||||| |||||| ||||
seq2  ATACCAAGAAAAAAAAAAGAGAACTGTTTTGTGTTTATTCACCCC-AAAG  1049

seq1  GTCCTCAACATATTTGCTCTTTATAATTCAAATG--TGCAATGTAAAACA  1098
      |||||| ||||||||| || |||| |||||||||   |||||||||| ||
seq2  GTCCTC-ACATATTTG-TCCTTAT-ATTCAAATGGTGGCAATGTAAACCA  1096

seq1  CAGCTGAAG-ATGATGGCTGC-TATC-TTCCTGCAAGTTTGCTTTTCTTT  1145
      || |||||| ||||||||||| |||| |||| ||||| ||||||||||||
seq2  CA-CTGAAGAATGATGGCTGCTTATCTTTCCCGCAAG-TTGCTTTTCTTT  1144

seq1  CTTGCCCTGCTCTCTAACTTGGGTGCCTGCAAAATCCCATCTTGCCATCA  1195
      | || ||||| | |||||| |||||||||| || ||||||| || |||||
seq2  C-TGGCCTGCCCCCTAACTGGGGTGCCTGCCAATTCCCATCCTGGCATCA  1193

seq1  TTTAACT  1202
       ||||||
seq2  -TTAACT  1199

seq1: chr1_18820459_18821504
seq2: B6Ng01-029M15.g_67_1105 (reverse)

seq1  CCA-CCAAACCCAGACACTATTGCATACGCCAGCAAGATTTTGCTTACAG  49
      ||| || |||||||||||   |||||| | |||||||||||   ||||||
seq2  CCACCCCAACCCAGACACGTATGCATA-GACAGCAAGATTTGCTTTACAG  49

seq1  GACCCTGATATAGCTGTCTCTTGTGAGGCGATGGCAGTGCCAGGCAAATA  99
         ||||||| ||||||||||||||||||||||||||||||||   ||||
seq2  --ACCTGATA-AGCTGTCTCTTGTGAGGCGATGGCAGTGCCAG--CAATA  94

seq1  CAGAAGTGGATGCTCACAGTCATCTATTGAATGGAACACAGGGCCCCCAA  149
      ||| |||||||||||||||||||||||||| ||  | |||||||||||||
seq2  CAG-AGTGGATGCTCACAGTCATCTATTGATTG--AAACAGGGCCCCCAA  141

seq1  TAAATGAGCTAGGGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACTCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGCTAGGGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACTCTA  191

seq1  TAGGAGGAACAACAATGTGAACTAACCAGTACCCCACCCCCTCCCTGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAACAACAATGTGAACTAACCAGTACCCCACCCCCTCCCTGCAG  241

seq1  AGCTGTATCTCTGTTGCATATGTAGCAGAGGATGGCCTAGTAGGCCATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATCTCTGTTGCATATGTAGCAGAGGATGGCCTAGTAGGCCATCA  291

seq1  ATAGGAGGAGAGACCCTTGGTTTTGTGAAGATTATATG-CCCCAGTACAG  348
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATAGGAGGAGAGACCCTTGGTTTTGTGAAGATTATATGCCCCCAGTACAG  341

seq1  GGGAATGCCAGGGCCAGGAAGAGGGAGTGGGTGGGTTGTGGGAGCAGGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCCAGGGCCAGGAAGAGGGAGTGGGTGGGTTGTGGGAGCAGGGC  391

seq1  AGGGGGGAGGGTATAGGGGACTTTCAGGATAGCATTTGAAATGTAAATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGAGGGTATAGGGGACTTTCAGGATAGCATTTGAAATGTAAATGA  441

seq1  AGAGAATATCTAATAAAAAATAAATTAAAAAAATAAAAATAAAAAGTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATCTAATAAAAAATAAATTAAAAAAATAAAAATAAAAAGTACA  491

seq1  TAGTATGTATAGTTAGTCATATTATGTACTGAATCCAAGTAAAAATAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTATAGTTAGTCATATTATGTACTGAATCCAAGTAAAAATAAAA  541

seq1  TATATAATTTTCTAAGCAAATACTCAAATCAGTACTTCACAGTGCCAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTTTCTAAGCAAATACTCAAATCAGTACTTCACAGTGCCAACA  591

seq1  TGTGTTCTTAACCATAAAACTTTCTGTTGTCCTTACTTGCAAAATAAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTAACCATAAAACTTTCTGTTGTCCTTACTTGCAAAATAAAAT  641

seq1  CCATTGTCTTTAGAAAGATATTAAGTGGAAAGTGGAGCATAAATCAGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCTTTAGAAAGATATTAAGTGGAAAGTGGAGCATAAATCAGTTG  691

seq1  GCATAGAAGCTCTTGTTGGTCTGAGGAGAGGTACCCTCCAGTACAGGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAGCTCTTGTTGGTCTGAGGAGAGGTACCCTCCAGTACAGGCTC  741

seq1  TCCCACTTGGACGGGTGAGGGAAGCTTCTAAGGAGAGAGGCTAGGTGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTGGACGGGTGAGGGAAGCTTCTAAGGAGAGAGGCTAGGTGGAG  791

seq1  TAGCTCTCCTTGACTGAAATCTCTTGAGTGACAAAGGCTGTTCTTGGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCCTTGACTGAAATCTCTTGAGTGACAAAGGCTGTTCTTGGGAA  841

seq1  TGATAAGTCCATGACAAAGGAACAGCAAGTAAGCTTCTATCCCAGTAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTCCATGACAAAGGAACAGCAAGTAAGCTTCTATCCCAGTAGCA  891

seq1  GCTGGTGAGCAGCAGGGCTTGAATTCCTGCTAGACCAGAAGAAAAGTTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGCAGCAGGGCTTGAATTCCTGCTAGACCAGAAGAAAAGTTCC  941

seq1  TGATCCTTGTGGAAAATGCCAGTAAACATTCTCATTCAACTCACAGACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTGTGGAAAATGCCAGTAAACATTCTCATTCAACTCACAGACCT  991

seq1  CATATTTAAAGCATTTCCCTGCTCAGAGTAGCAGGAACAGATGAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAAGCATTTCCCTGCTCAGAGTAGCAGGAACAGATGAATTC  1039