BAC Information

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BAC

Clone NameB6Ng01-029M20
Chromosome1 (Build37)
Map Location 169,098,466 - 169,258,854
singlet/doubletdoublet
Overlap geneUck2, LOC100039844, Tmco1
Upstream geneMael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
Downstream geneAldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M20.bB6Ng01-029M20.g
ACCDH859896DH859897
length9611,145
definitionDH859896|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M20, 5' end.DH859897|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,257,892 - 169,258,854)(169,098,466 - 169,099,624)
sequence
gaattccagtgctcaggtgcaggcaggaggatcaagagttcaaggccagc
ctgagctgtctcaaaaggttctaatttaaaccatatgctctgattcttag
tctagtggacactctcccaccacactttctgttagagtgctggccttcag
aacaaatggcactcagtatacacagccttatactcctggactatctgtcc
ttcaacactccgttgtctgttggccttaagacactaggagaatgcccgta
tctaggctcctttgtatatacataatactttcatcccttgtcagaagata
atgaagtaacaaatacaacttcaaggacccctttaatttatcataaaata
tttaaatatatttgcatatatttaatactttaaatatttcatactttaat
gagaattttttaaatgagttaggaagatcaatcattaataggtcaggcta
gagaagtatctgagtttgtatttcttttataataaatataacttcccaga
cagctgtaaaaaattaaaaacaaaaacattatataaaactgtgagaaaaa
tcaaacaatatgctattaatttcctgcttttaaaatttgagcattgctgg
gcggtggtggcgcacacatttaatcccagcactcgggaggcagaggcagg
aggatttctgagttcgaggccagcctggtctacagagtgagttccagggc
agccagggctacacagagaaaccctgtctcgaaaaatctataaaacaaaa
caaaacaaaacaaaaaatttgagcattaatagccaggtgtgatggcacat
gcctctaccccaaacttggaaagcagaggcagggggatcagttttaaagc
cagcttaggatacataagattggtctcaaaaagtaatttaaaagaacaga
aactgaccagtacttctgggcacttcaatgtatttagctaaggattctga
gaaacaacaca
gaattctcagcagctcctctcagacataacctcaaccctaatgtctttct
tcctttttggttcaaaacagttcttgcaagctgcggcccatctgggattt
acacactctgagagcattgtgtgcatctgtgcctcttagctctccttgac
aatcaggttgtctttacagctcttacttgtggcctttaacatgtaaactg
taagctgctgaatgactcaatcagtacagtgcttgccgagcatgtacaaa
gcccccagttcgatccccaacaccccctaaaccaacaatggcggcacaca
catgtaatcccagcatttgtgaagaggaggcaagaggatccaagagttta
aagtcaccttggctacacagagctagaggctaatctggactacaggaaac
ccttattacacaaacaaataaatttctggattagtttggtttccattgct
gtgacaaaacactgattaaaagcaacttgaaaagaaaaggtaatatttgg
tttgtggttacatcccatagttgtaggctaccaggacaggaacctgaagg
caggaactaaagcagagatcaccaaggaacactgcgtcttggtctattct
tatgacttgctcagatatctttctttaaacatcccaggactacctgctca
ggggcagcactgcccattgattacaaaaatgccccctgtggcattcacat
aggccaacttgatagaggcaggcagtcctcatgtgagtttatctatcaag
ttgacaaaaactaaccagaacaccaagtaagtgactaaacaaactatcta
agtccacagagaacccctgtgtggttggttagctagcatccatgggcatc
tcctgcctccaccttgctcttcctcatccaggttcttccagctcaatctt
tctcagatgctctcctgcagatcactctgttaaatgtcagtgctgcctta
tttcttttcacattgctggatgcacatctaccgccatgtgcattcttttt
gtcgcatcctcctaatttccccgccttactactgaacccctccctacatg
tttgttctgctttggttttatatcagactctttgactatagttaaaacct
gatactgtattgtccttttccttgaaatcgaagtgctaaagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169257892_169258854
seq2: B6Ng01-029M20.b_43_1003 (reverse)

seq1  TGTGCTTGTTTCTCAGAATCCTTAGCTAAATACATTGTAGGTGCCCAGGA  50
      |||| |||||||||||||||||||||||||||||||| | ||||||| ||
seq2  TGTG-TTGTTTCTCAGAATCCTTAGCTAAATACATTG-AAGTGCCCA-GA  47

seq1  AGTACTGGTCAGTTTCTGTTCTTTTAAATTACTTTTTGAGA-CAATCTTA  99
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTACTGGTCAGTTTCTGTTCTTTTAAATTACTTTTTGAGACCAATCTTA  97

seq1  TGTATCCTAAGCTGGCTTTAAAACTGATCCCCCTGCCTCTGCTTTCCAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTAAGCTGGCTTTAAAACTGATCCCCCTGCCTCTGCTTTCCAAG  147

seq1  TTTGGGGTAGAGGCATGTGCCATCACACCTGGCTATTAATGCTCAAATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTAGAGGCATGTGCCATCACACCTGGCTATTAATGCTCAAATTT  197

seq1  TTTGTTTTGTTTTGTTTTGTTTTATTGATTTTTCGAGACAGGGTTTCTCT  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTTATAGATTTTTCGAGACAGGGTTTCTCT  247

seq1  GTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  297

seq1  AACTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAATGTG  347

seq1  TGCGCCACCACCGCCCAGCAATGCTCAAATTTTAAAAGCAGGAAATTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCACCACCGCCCAGCAATGCTCAAATTTTAAAAGCAGGAAATTAAT  397

seq1  AGCATATTGTTTGATTTTTCTCACAGTTTTATATAATGTTTTTGTTTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTGTTTGATTTTTCTCACAGTTTTATATAATGTTTTTGTTTTTA  447

seq1  ATTTTTTACAGCTGTCTGGGAAGTTATATTTATTATAAAAGAAATACAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTACAGCTGTCTGGGAAGTTATATTTATTATAAAAGAAATACAAA  497

seq1  CTCAGATACTTCTCTAGCCTGACCTATTAATGATTGATCTTCCTAACTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATACTTCTCTAGCCTGACCTATTAATGATTGATCTTCCTAACTCA  547

seq1  TTTAAAAAATTCTCATTAAAGTATGAAATATTTAAAGTATTAAATATATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTCTCATTAAAGTATGAAATATTTAAAGTATTAAATATATG  597

seq1  CAAATATATTTAAATATTTTATGATAAATTAAAGGGGTCCTTGAAGTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATTTAAATATTTTATGATAAATTAAAGGGGTCCTTGAAGTTGT  647

seq1  ATTTGTTACTTCATTATCTTCTGACAAGGGATGAAAGTATTATGTATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTACTTCATTATCTTCTGACAAGGGATGAAAGTATTATGTATATA  697

seq1  CAAAGGAGCCTAGATACGGGCATTCTCCTAGTGTCTTAAGGCCAACAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGCCTAGATACGGGCATTCTCCTAGTGTCTTAAGGCCAACAGAC  747

seq1  AACGGAGTGTTGAAGGACAGATAGTCCAGGAGTATAAGGCTGTGTATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGTGTTGAAGGACAGATAGTCCAGGAGTATAAGGCTGTGTATACT  797

seq1  GAGTGCCATTTGTTCTGAAGGCCAGCACTCTAACAGAAAGTGTGGTGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCATTTGTTCTGAAGGCCAGCACTCTAACAGAAAGTGTGGTGGGA  847

seq1  GAGTGTCCACTAGACTAAGAATCAGAGCATATGGTTTAAATTAGAACCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCACTAGACTAAGAATCAGAGCATATGGTTTAAATTAGAACCTT  897

seq1  TTGAGACAGCTCAGGCTGGCCTTGAACTCTTGATCCTCCTGCCTGCACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGCTCAGGCTGGCCTTGAACTCTTGATCCTCCTGCCTGCACCT  947

seq1  GAGCACTGGAATTC  963
      ||||||||||||||
seq2  GAGCACTGGAATTC  961

seq1: chr1_169098466_169099624
seq2: B6Ng01-029M20.g_68_1212

seq1  GAATTCTCAGCAGCTCCTCTCAGACATAACCTCAACCCTAATGTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGCTCCTCTCAGACATAACCTCAACCCTAATGTCTTTCT  50

seq1  TCCTTTTTGGTTCAAAACAGTTCTTGCAAGCTGCGGCCCATCTGGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGGTTCAAAACAGTTCTTGCAAGCTGCGGCCCATCTGGGATTT  100

seq1  ACACACTCTGAGAGCATTGTGTGCATCTGTGCCTCTTAGCTCTCCTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTGAGAGCATTGTGTGCATCTGTGCCTCTTAGCTCTCCTTGAC  150

seq1  AATCAGGTTGTCTTTACAGCTCTTACTTGTGGCCTTTAACATGTAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTTGTCTTTACAGCTCTTACTTGTGGCCTTTAACATGTAAACTG  200

seq1  TAAGCTGCTGAATGACTCAATCAGTACAGTGCTTGCCGAGCATGTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCTGAATGACTCAATCAGTACAGTGCTTGCCGAGCATGTACAAA  250

seq1  GCCCCCAGTTCGATCCCCAACACCCCCTAAACCAACAATGGCGGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGTTCGATCCCCAACACCCCCTAAACCAACAATGGCGGCACACA  300

seq1  CATGTAATCCCAGCATTTGTGAAGAGGAGGCAAGAGGATCCAAGAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATCCCAGCATTTGTGAAGAGGAGGCAAGAGGATCCAAGAGTTTA  350

seq1  AAGTCACCTTGGCTACACAGAGCTAGAGGCTAATCTGGACTACAGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCTTGGCTACACAGAGCTAGAGGCTAATCTGGACTACAGGAAAC  400

seq1  CCTTATTACACAAACAAATAAATTTCTGGATTAGTTTGGTTTCCATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTACACAAACAAATAAATTTCTGGATTAGTTTGGTTTCCATTGCT  450

seq1  GTGACAAAACACTGATTAAAAGCAACTTGAAAAGAAAAGGTAATATTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAACACTGATTAAAAGCAACTTGAAAAGAAAAGGTAATATTTGG  500

seq1  TTTGTGGTTACATCCCATAGTTGTAGGCTACCAGGACAGGAACCTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTACATCCCATAGTTGTAGGCTACCAGGACAGGAACCTGAAGG  550

seq1  CAGGAACTAAAGCAGAGATCACCAAGGAACACTGCGTCTTGGTCTATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTAAAGCAGAGATCACCAAGGAACACTGCGTCTTGGTCTATTCT  600

seq1  TATGACTTGCTCAGATATCTTTCTTTAAACATCCCAGGACTACCTGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTGCTCAGATATCTTTCTTTAAACATCCCAGGACTACCTGCTCA  650

seq1  GGGGCAGCACTGCCCATTGATTACAAAAATGCCCCCTGTGGCATTCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCACTGCCCATTGATTACAAAAATGCCCCCTGTGGCATTCACAT  700

seq1  AGGCCAACTTGATAGAGGCAGGCAGTCCTCATGTGAGTTTATCTATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACTTGATAGAGGCAGGCAGTCCTCATGTGAGTTTATCTATCAAG  750

seq1  TTGACAAAAACTAACCAGAACACCAAGTAAGTGACTAAACAAACTATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAAACTAACCAGAACACCAAGTAAGTGACTAAACAAACTATCTA  800

seq1  AGTCCACAGAGAACCCCTGTGTGGTTGGTTAGCTAGCATCCATGGGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACAGAGAACCCCTGTGTGGTTGGTTAGCTAGCATCCATGGGCATC  850

seq1  TCCTGCCTCCACCTTGCTCTTCCTCATCCAGGTTCTTCCAGCTCAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCCACCTTGCTCTTCCTCATCCAGGTTCTTCCAGCTCAATCTT  900

seq1  TCTCAGATGCTCTCCTGCCAGATCACTCTGTTAAAATGTCAGTGCTGCCT  950
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  TCTCAGATGCTCTCCTG-CAGATCACTCTGTT-AAATGTCAGTGCTGCCT  948

seq1  TATTTCTTTTCCACATTGCTGGATGCACATCTACGGCCATGTGCATTCTT  1000
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  TATTTCTTTT-CACATTGCTGGATGCACATCTACCGCCATGTGCATTCTT  997

seq1  TTTGGTCGCAT-CTCCCTATTTCACCGCCTTACTAACTGAACCCCTCCAC  1049
      ||| ||||||| ||||  ||||| |||||||||| ||||||||||||| |
seq2  TTT-GTCGCATCCTCCTAATTTCCCCGCCTTACT-ACTGAACCCCTCC-C  1044

seq1  TACATGTTTTGTTTCTGCTTTTGTTTTTATTATCAGACTCTTTGACTATA  1099
      |||||||||   ||||||||| |||||   ||||||||||||||||||||
seq2  TACATGTTT--GTTCTGCTTTGGTTTT--ATATCAGACTCTTTGACTATA  1090

seq1  GTTAAAAACCTGATACTGTTTTGTCTCTTTGTCCTTGAATACTGATGTGC  1149
      ||| ||||||||||||||| ||||| |||| |||||||| |  || ||||
seq2  GTT-AAAACCTGATACTGTATTGTC-CTTT-TCCTTGAA-ATCGAAGTGC  1136

seq1  TTAAAGCCAC  1159
       |||||||||
seq2  -TAAAGCCAC  1145