BAC Information

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BAC

Clone NameB6Ng01-030A14
Chromosome1 (Build37)
Map Location 192,829,159 - 192,871,544
singlet/doubletdoublet
Overlap gene9630055N22Rik, 1700022P22Rik, Tatdn3
Upstream geneProx1, LOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987
Downstream geneNsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A14.bB6Ng01-030A14.g
ACCDH860061DH860062
length1,1271,070
definitionDH860061|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A14, 5' end.DH860062|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(192,829,159 - 192,830,298)(192,870,461 - 192,871,544)
sequence
gaattctttcttgccactgtgctgtgccactgtggtgggaggatggggtt
aacaacgtgaacttaacctgcctttcacggggtttctgctggaactatgc
tgaaacctcttcactggacctccaacaaaagcgcaatctatgaagagtct
tgagaaacagtgcttccgaggtcaagtctccactgccatgctgacatcgc
cctctgcaaatctcttttttaaagttttttgtttgtttgttttaaatcat
acacacgtgtgcgggcgtgtacatgagtacagttgcccagggaggccaca
agagtgtggtggatccctgggacagttgtgaccacgcctgatgtggatat
taggaacaaaactcaggtcttctacaggagcagtgcacactcctaactgc
tgagcccctttcccagcttactcttacattattttacatttattttctat
tgagtactgatgacagtgggctccattcttctatggctgtctctaagacc
atatgatcgctttctaacttcccacacatatcagacaccaggatttgttt
ttaaaggacatataaaattagcactaaaaaaataaatttattttaagtat
gaaataatgaagaacaggcacatagagaaattataaaagtagcaaaataa
gaacaggaatgaagacattagacataggtgccattccagttgctaacata
aacattttcaaagatattactccaacaatctcaatagacaaaagctatgt
cacaacatttacagatgcaacagcttctgaaaccatctgatgaaaggcag
acacaggtgatgataattactacttctatacccatgacatagaattttat
caaattcttatctgatgtattacccatacatccacttaaaatactgagaa
catcatcgattcattttgcattattacgtcagactttatcccttttctaa
acataaaaacaaaacagaatatacttttcagacattaagtattcactttt
atctgtaatttgttcaagcttcaggaagtaacatgtatatggtctgtaac
aacactgtcaatttagaaacgaacagcctgggagacaggcaatttggtca
tttgtacctgggacagaaaaactaaaa
gaattcagatgtgtgccagcatgctcggccagtctgagtttcacctctgt
aatggacagccttgaatgtgactctttgaaacactttttttttttttttt
ttttttttttttggttttttgagacagggtttctctgtgtagccctggct
gtcctggaactcactttgtagaccaggctggcctcgaactcaaaaatccg
cctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccccacc
cggcttaaaacacttattttgttagcctgtattatcaagagttttttacc
ttaataattgtattcctcttattattatcccaagtagccacttactaata
attacagaaatgttttcagtaagtctaaatgctgttgattgcagaaatat
tgttattattatttttttaatcattaggaaacacaactgaggggggctgg
agagatgactcattggttaatagcactgactgctcttccagaggtcctga
gttcaattcccagcagccacatggtagctcacaaccaactgtaatggaat
ccagtcccctcttctggtgtttctgaagagagtgacagtgtacccacata
cataaaataaattaaataaaaaaaagaaaaaaagaaacacaactgaggag
ctagagagatggctcagtggtttagagcactggctgctcttctagaggac
ctgggttcagttcagcacccacatggcatctcacagctgtctgtaacttc
agcatctgacaccctcacacagacatacatgcaggcaaaacaccaatgta
cataaaataatttttttaaaaaaggaaaaaagaaacgacactggggtgta
agcagaatgtttatttcacaggtattagatggggggggtgtaccttaagg
tcagcagctggcagaactaagtctagttcttggggcatttgaaacacact
gggcaggtagcttggggtgtgggggccagcagagtggaattgcctttcag
aactctatggcaagcaacaaaccagggaacttatctcagggagctggctc
cctcgggttcagttggaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_192829159_192830298
seq2: B6Ng01-030A14.b_48_1174

seq1  GAATTCTTTCTTGCCACTGTGCTGTGCCACTGTGGTGGGAGGATGGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGCCACTGTGCTGTGCCACTGTGGTGGGAGGATGGGGTT  50

seq1  AACAACGTGAACTTAACCTGCCTTTCACGGGGTTTCTGCTGGAACTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGTGAACTTAACCTGCCTTTCACGGGGTTTCTGCTGGAACTATGC  100

seq1  TGAAACCTCTTCACTGGACCTCCAACAAAAGCGCAATCTATGAAGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTCTTCACTGGACCTCCAACAAAAGCGCAATCTATGAAGAGTCT  150

seq1  TGAGAAACAGTGCTTCCGAGGTCAAGTCTCCACTGCCATGCTGACATCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACAGTGCTTCCGAGGTCAAGTCTCCACTGCCATGCTGACATCGC  200

seq1  CCTCTGCAAATCTCTTTTTTAAAGTTTTTTGTTTGTTTGTTTTAAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAATCTCTTTTTTAAAGTTTTTTGTTTGTTTGTTTTAAATCAT  250

seq1  ACACACGTGTGCGGGCGTGTACATGAGTACAGTTGCCCAGGGAGGCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGTGTGCGGGCGTGTACATGAGTACAGTTGCCCAGGGAGGCCACA  300

seq1  AGAGTGTGGTGGATCCCTGGGACAGTTGTGACCACGCCTGATGTGGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGGTGGATCCCTGGGACAGTTGTGACCACGCCTGATGTGGATAT  350

seq1  TAGGAACAAAACTCAGGTCTTCTACAGGAGCAGTGCACACTCCTAACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACAAAACTCAGGTCTTCTACAGGAGCAGTGCACACTCCTAACTGC  400

seq1  TGAGCCCCTTTCCCAGCTTACTCTTACATTATTTTACATTTATTTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCTTTCCCAGCTTACTCTTACATTATTTTACATTTATTTTCTAT  450

seq1  TGAGTACTGATGACAGTGGGCTCCATTCTTCTATGGCTGTCTCTAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTGATGACAGTGGGCTCCATTCTTCTATGGCTGTCTCTAAGACC  500

seq1  ATATGATCGCTTTCTAACTTCCCACACATATCAGACACCAGGATTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATCGCTTTCTAACTTCCCACACATATCAGACACCAGGATTTGTTT  550

seq1  TTAAAGGACATATAAAATTAGCACTAAAAAAATAAATTTATTTTAAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGACATATAAAATTAGCACTAAAAAAATAAATTTATTTTAAGTAT  600

seq1  GAAATAATGAAGAACAGGCACATAGAGAAATTATAAAAGTAGCAAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGAAGAACAGGCACATAGAGAAATTATAAAAGTAGCAAAATAA  650

seq1  GAACAGGAATGAAGACATTAGACATAGGTGCCATTCCAGTTGCTAACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAATGAAGACATTAGACATAGGTGCCATTCCAGTTGCTAACATA  700

seq1  AACATTTTCAAAGATATTACTCCAACAATCTCAATAGACAAAAGCTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCAAAGATATTACTCCAACAATCTCAATAGACAAAAGCTATGT  750

seq1  CACAACATTTACAGATGCAACAGCTTCTGAAACCATCTGATG-AAGGCAG  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACAACATTTACAGATGCAACAGCTTCTGAAACCATCTGATGAAAGGCAG  800

seq1  ACACAGGTGATGATAATTACTACTTCTATACCCATGACATAGAATTTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGATGATAATTACTACTTCTATACCCATGACATAGAATTTTAT  850

seq1  CAAATTCTTATCTGATGTATTACCCATACATCCACTTAAAATACTGAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTTATCTGATGTATTACCCATACATCCACTTAAAATACTGAGAA  900

seq1  CATCATCGATTCATTTTGCATTATTACGTCAGACTTTATCCCTTTTCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCGATTCATTTTGCATTATTACGTCAGACTTTATCCCTTTTCTAA  950

seq1  ACAATAAAAAACAAAACAAGAATATACTTTTCAGACATTAAGTATTCCAA  999
      |||   ||||||||||| |||||||||||||||||||||||||||||  |
seq2  ACA--TAAAAACAAAAC-AGAATATACTTTTCAGACATTAAGTATTC--A  995

seq1  CTTTTATCTGTAATTTGTTCAAAGCTTCAGGAAGTAACATGTATATGGTC  1049
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTTATCTGTAATTTGTTC-AAGCTTCAGGAAGTAACATGTATATGGTC  1044

seq1  TTGTAAACAACACTGTCAATTTAGAAACAGAAACAGCTGGGGGAGACAGT  1099
       ||| |||||||||||||||||||||||   ||||||   ||||||||| 
seq2  -TGT-AACAACACTGTCAATTTAGAAAC--GAACAGC-CTGGGAGACAG-  1088

seq1  GCATTTTTGGTCATTTGTAACCTGTGACAGAAAAACTAAAA  1140
      |||  ||||||||||||| ||||| ||||||||||||||||
seq2  GCA-ATTTGGTCATTTGT-ACCTGGGACAGAAAAACTAAAA  1127

seq1: chr1_192870461_192871544
seq2: B6Ng01-030A14.g_67_1136 (reverse)

seq1  GGGTGCCAACTGAACCCAGAGAGAG-CAGCTTGCCTGAAGGATTAAGTGT  49
      |||| |||||||||||| ||| ||| |||| | |||||  || ||||| |
seq2  GGGT-CCAACTGAACCC-GAGGGAGCCAGC-TCCCTGA--GA-TAAGT-T  43

seq1  CCCTTGTTTTGCTGCTTG-CAT-GAGTTCTGGGAAAGGCCACTGCACTCT  97
      ||| || |||| |||||| ||| |||||||  ||||||| | | ||||||
seq2  CCC-TGGTTTGTTGCTTGCCATAGAGTTCT--GAAAGGCAATTCCACTCT  90

seq1  GCTTGGCCCCTCACCTCAAAGGCTACCTGCCCAGTGTGGTTTCAAATGCC  147
      ||| | |||| |||| |||  |||||||||||||||| ||||||||||||
seq2  GCTGGCCCCCACACCCCAA--GCTACCTGCCCAGTGT-GTTTCAAATGCC  137

seq1  CCAAGGACTAGACTTAGGTTCTGCCAGCTTGCTGACCTTAAGGTACACCC  197
      ||||| |||||||||| ||||||||||| |||||||||||||||||||||
seq2  CCAAGAACTAGACTTA-GTTCTGCCAGC-TGCTGACCTTAAGGTACACCC  185

seq1  CCCTCATCTTAATACCTGTGAAATAAACATTCTGCTTACA-CCCAGTGTC  246
      ||| |||| ||||||||||||||||||||||||||||||| |||||||||
seq2  CCCCCATC-TAATACCTGTGAAATAAACATTCTGCTTACACCCCAGTGTC  234

seq1  GTTTCTTTTTTCCTTTTTTAAAAAAAATTATTTTATGTACATTGGTGTTT  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTTCCTTTTTT-AAAAAAATTATTTTATGTACATTGGTGTTT  283

seq1  TGCCTGCATGTATGTCTGTGTGAGGGTGTCAGATGCTGAAGTTACAGACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCATGTATGTCTGTGTGAGGGTGTCAGATGCTGAAGTTACAGACA  333

seq1  GCTGTGAGATGCCATGTGGGTGCTGGAACTGAACCCAGGTCCTCTAGAAG  396
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTGTGAGATGCCATGTGGGTGCT-GAACTGAACCCAGGTCCTCTAGAAG  382

seq1  AGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCTAGCTCCTCAGTTGT  446
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGTGCTCTAAACCACTGAGCCATCTCTCTAGCTCCTCAGTTGT  432

seq1  GTTTCTTTTTTTCTTTTTTTTATTTAATTTATTTTATGTATGTGGGTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTTTCTTTTTTTTATTTAATTTATTTTATGTATGTGGGTACA  482

seq1  CTGTCACTCTCTTCAGAAACACCAGAAGAGGGGACTGGATTCCATTACAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTCTCTTCAGAAACACCAGAAGAGGGGACTGGATTCCATTACAG  532

seq1  TTGGTTGTGAGCTACCATGTGGCTGCTGGGAATTGAACTCAGGACCTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTGAGCTACCATGTGGCTGCTGGGAATTGAACTCAGGACCTCTG  582

seq1  GAAGAGCAGTCAGTGCTATTAACCAATGAGTCATCTCTCCAGCCCCCCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCAGTGCTATTAACCAATGAGTCATCTCTCCAGCCCCCCTC  632

seq1  AGTTGTGTTTCCTAATGATTAAAAAAATAATAATAACAATATTTCTGCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTTTCCTAATGATTAAAAAAATAATAATAACAATATTTCTGCAA  682

seq1  TCAACAGCATTTAGACTTACTGAAAACATTTCTGTAATTATTAGTAAGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCATTTAGACTTACTGAAAACATTTCTGTAATTATTAGTAAGTG  732

seq1  GCTACTTGGGATAATAATAAGAGGAATACAATTATTAAGGTAAAAAACTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGGGATAATAATAAGAGGAATACAATTATTAAGGTAAAAAACTC  782

seq1  TTGATAATACAGGCTAACAAAATAAGTGTTTTAAGCCGGGTGTGGTGGCA  846
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGATAATACAGGCTAACAAAATAAGTGTTTTAAGCCGGGTGGGGTGGCA  832

seq1  CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTTGAG  882

seq1  TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  932

seq1  ACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAA  982

seq1  AAAAGTGTTTCAAAGAGTCACATTCAAGGCTGTCCATTACAGAGGTGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTTCAAAGAGTCACATTCAAGGCTGTCCATTACAGAGGTGAAA  1032

seq1  CTCAGACTGGCCGAGCATGCTGGCACACATCTGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTGGCCGAGCATGCTGGCACACATCTGAATTC  1070