BAC Information

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BAC

Clone NameB6Ng01-030A23
Chromosome1 (Build37)
Map Location 120,648,999 - 120,851,847
singlet/doubletdoublet
Overlap geneGli2
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A23.bB6Ng01-030A23.g
ACCDH860077DH860078
length951297
definitionDH860077|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A23, 5' end.DH860078|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,648,999 - 120,649,949)(120,851,551 - 120,851,847)
sequence
gaattccaagtgctagttgaccagttgctctagtctccggtgaagcgtct
tttcaggacgccttttccaggtggcactgggtactacagacaacttacta
agtctttcgccaggcaaagaaagcagaagccttcttacctgttgtctaag
cactgtagagatagaggcaggaggaccaggagtctaaggttatcctggct
gaatagtgagtttgaggccagcctgggctacaagagaccctgtctttaaa
aatagaaaagaaaaaggaggctgaggagatgactgttgataaagtgcttg
tctcacaagtttgagatcagggtgggtaatcacgtctttaaagagttatg
ttagcccaatcacccgaggaacacacagggctggagagatggtccaatgg
ttagtgtgctacagtgtggatgctcatgaatctgtatgaagcatttctgt
tcagagattagctctgattactccccactggtcatctggggtgtgggaat
gagcttgcaagagtccagggctgtgtccaatcaggtgaggacacaggaga
aagagacctggggctgtggaaatgactcagttgattgagtgtttgctgtg
caagcataaggacctgggctcaggcgctcaccacccatgtaaaggtcacc
accagcagcagaatgacctgtgatccacacaccaaaggacagatacagaa
gggttgctggggcctcgctggccagctagactcaccgaattggcaagctc
cagattcagtttagagaccttgtgtgaaacaatgaggagggccatgagat
gggagatgtctcagctgatgaaagcacttgtccccagcctgacaccctaa
cgtcatctccataacccataatggaaggagagagccacttctgaaagttg
tcacatatatagcattgcatgcatgtttgcacgtatgtgctgtacatatg
t
cagtgagggtgatgacaagctgatgggctctcagcgtgggaagccctgta
ccactctgatggccctccgggagtgagctgggagaccctgcctctcagat
gtgcctactgggccacgtgggggcaagaaatggcagtggtgtgttcctgt
tctaagccaggtggctgatttaatccagctgaggccagggcctcttcatg
gaggcttagaagacagctgggtctctgccaagtcctcctccctaccacat
ggggctacaaagcccagaaaggggggagatctgcttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_120648999_120649949
seq2: B6Ng01-030A23.b_47_997

seq1  GAATTCCAAGTGCTAGTTGACCAGTTGCTCTAGTCTCCGGTGAAGCGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGCTAGTTGACCAGTTGCTCTAGTCTCCGGTGAAGCGTCT  50

seq1  TTTCAGGACGCCTTTTCCAGGTGGCACTGGGTACTACAGACAACTTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGACGCCTTTTCCAGGTGGCACTGGGTACTACAGACAACTTACTA  100

seq1  AGTCTTTCGCCAGGCAAAGAAAGCAGAAGCCTTCTTACCTGTTGTCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCGCCAGGCAAAGAAAGCAGAAGCCTTCTTACCTGTTGTCTAAG  150

seq1  CACTGTAGAGATAGAGGCAGGAGGACCAGGAGTCTAAGGTTATCCTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGAGATAGAGGCAGGAGGACCAGGAGTCTAAGGTTATCCTGGCT  200

seq1  GAATAGTGAGTTTGAGGCCAGCCTGGGCTACAAGAGACCCTGTCTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTGAGTTTGAGGCCAGCCTGGGCTACAAGAGACCCTGTCTTTAAA  250

seq1  AATAGAAAAGAAAAAGGAGGCTGAGGAGATGACTGTTGATAAAGTGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGAAAAAGGAGGCTGAGGAGATGACTGTTGATAAAGTGCTTG  300

seq1  TCTCACAAGTTTGAGATCAGGGTGGGTAATCACGTCTTTAAAGAGTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAGTTTGAGATCAGGGTGGGTAATCACGTCTTTAAAGAGTTATG  350

seq1  TTAGCCCAATCACCCGAGGAACACACAGGGCTGGAGAGATGGTCCAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCAATCACCCGAGGAACACACAGGGCTGGAGAGATGGTCCAATGG  400

seq1  TTAGTGTGCTACAGTGTGGATGCTCATGAATCTGTATGAAGCATTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGCTACAGTGTGGATGCTCATGAATCTGTATGAAGCATTTCTGT  450

seq1  TCAGAGATTAGCTCTGATTACTCCCCACTGGTCATCTGGGGTGTGGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATTAGCTCTGATTACTCCCCACTGGTCATCTGGGGTGTGGGAAT  500

seq1  GAGCTTGCAAGAGTCCAGGGCTGTGTCCAATCAGGTGAGGACACAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCAAGAGTCCAGGGCTGTGTCCAATCAGGTGAGGACACAGGAGA  550

seq1  AAGAGACCTGGGGCTGTGGAAATGACTCAGTTGATTGAGTGTTTGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCTGGGGCTGTGGAAATGACTCAGTTGATTGAGTGTTTGCTGTG  600

seq1  CAAGCATAAGGACCTGGGCTCAGGCGCTCACCACCCATGTAAAGGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATAAGGACCTGGGCTCAGGCGCTCACCACCCATGTAAAGGTCACC  650

seq1  ACCAGCAGCAGAATGACCTGTGATCCACACACC-AAGGACAGATACAGAA  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCAGCAGCAGAATGACCTGTGATCCACACACCAAAGGACAGATACAGAA  700

seq1  GGGTTGCT-GGGCCTCGCTGGCCAGCTAGACTCACCGAATTGGCAAGCTC  748
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTGGGGCCTCGCTGGCCAGCTAGACTCACCGAATTGGCAAGCTC  750

seq1  CAGATTCAG-TTAGAGACCTTGTGTGAAACAATGAGGAGGGCCATGAGAT  797
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCAGTTTAGAGACCTTGTGTGAAACAATGAGGAGGGCCATGAGAT  800

seq1  GGGAGATGTCTCAGCTGATGAAAGCACTTGTCCCCAAGCCTGACAACCTA  847
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  GGGAGATGTCTCAGCTGATGAAAGCACTTGTCCCC-AGCCTGACACCCTA  849

seq1  ACGTCATCTCCAGAACCCATAATGGAAGGAGAGAGCCAACTTCTGAAAGT  897
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  ACGTCATCTCCATAACCCATAATGGAAGGAGAGAGCC-ACTTCTGAAAGT  898

seq1  TGTCACATATATAGCATTGCATGCATGTATGCACGTATGTGCATGTACAT  947
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  TGTCACATATATAGCATTGCATGCATGTTTGCACGTATGTGC-TGTACAT  947

seq1  ATGT  951
      ||||
seq2  ATGT  951

seq1: chr1_120851551_120851847
seq2: B6Ng01-030A23.g_72_368 (reverse)

seq1  CCCCCCCCCCCAAGCAGATCTCCCCCCTTTCTGGGCTTTGTAGCCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCAAGCAGATCTCCCCCCTTTCTGGGCTTTGTAGCCCCATG  50

seq1  TGGTAGGGAGGAGGACTTGGCAGAGACCCAGCTGTCTTCTAAGCCTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGAGGAGGACTTGGCAGAGACCCAGCTGTCTTCTAAGCCTCCAT  100

seq1  GAAGAGGCCCTGGCCTCAGCTGGATTAAATCAGCCACCTGGCTTAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCCCTGGCCTCAGCTGGATTAAATCAGCCACCTGGCTTAGAACA  150

seq1  GGAACACACCACTGCCATTTCTTGCCCCCACGTGGCCCAGTAGGCACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACACCACTGCCATTTCTTGCCCCCACGTGGCCCAGTAGGCACATC  200

seq1  TGAGAGGCAGGGTCTCCCAGCTCACTCCCGGAGGGCCATCAGAGTGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCAGGGTCTCCCAGCTCACTCCCGGAGGGCCATCAGAGTGGTAC  250

seq1  AGGGCTTCCCACGCTGAGAGCCCATCAGCTTGTCATCACCCTCACTG  297
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCCCACGCTGAGAGCCCATCAGCTTGTCATCACCCTCACTG  297