BAC Information

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BAC

Clone NameB6Ng01-030H19
Chromosome1 (Build37)
Map Location 134,449,580 - 134,639,728
singlet/doubletdoublet
Overlap geneNfasc
Upstream geneAvpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2
Downstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030H19.bB6Ng01-030H19.g
ACCDH860381DH860382
length551535
definitionDH860381|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H19, 5' end.DH860382|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,449,580 - 134,450,135)(134,639,189 - 134,639,728)
sequence
tttggaatttcatttaagcccctcccactggggcccagaggagacgtgcc
cccttggttctttaatattccttcagttcttgagttgagacatgcccatc
aggagttagatcactggttgattttctttttaaattttaggtcacctttc
ttctttcagtgatggagtagttgtagtgggatggaagtgctgacttcctc
ttttgtgctgatgttctccatctcagtttccccagtgagtagtacactgt
ctggatcaaaagccactgtccaggagtagacccgtcatgaaaatggggca
aaaatccactataaaaaatgatgatgaccctctaagctctaactatgtag
ggagtaaagggacagagaagcgttgtgtgtggtgatgcttttgttgttat
gggtgtgcgtggaaagaagagaacagcaagattaatgattttcaatggga
tgaaagaaagtaaaagaggggtgtgcatagaagaggaaatggaaggaaca
agaaagtgggtgggggccagtgataagggatgctggttagagaaaagact
a
tttattccagggaccaggccaccactggatgcttttagtaaaggggggtg
agggaactctgccctccacacagacctgagtgctttcaagtgccttcccc
aagtcttctaagagtctgtcaggtgtttgggacctaccagggtccaggga
ccctatccctctggttgggttgactggctccttagtgtcatctggttctg
gtagggtgaagtctcattctcaggactaataccagggtgatgctgaagta
ttggttttaagtgacttgctgctttgtatatgtagtaaccttgaaaaaaa
tcgcccaggattctgacaatcttgcttcaaggctttcaaaactggcctcc
ctccctgcctcctctttgcctcccatctgcagctgttgggttggaagccc
ctagctgaagagaggccattttgtcagtgagtggatgagcctttactgag
cacaggctatgtgtggggcaggggggtgatctgcagcgtctcttttcctg
agcccacaggcagaggtgggtttgggggggatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134449580_134450135
seq2: B6Ng01-030H19.b_45_601

seq1  GAATTCTTTGGAATTTCATTTAAGCCCCTCCCACTGGGGCCCAGAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAATTTCATTTAAGCCCCTCCCACTGGGGCCCAGAGGAGA  50

seq1  CGTGCCCCCTTGGTTCTTTAATATTCCTTCAGTTCTTGAGTTGAGACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCCCCTTGGTTCTTTAATATTCCTTCAGTTCTTGAGTTGAGACATG  100

seq1  CCCATCAGGAGTTAGATCACTGGTTGATTTTCTTTTTAAATTTTAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGGAGTTAGATCACTGGTTGATTTTCTTTTTAAATTTTAGGTCA  150

seq1  CCTTTCTTCTTTCAGTGATGGAGTAGTTGTAGTGGGATGGAAGTGCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCTTTCAGTGATGGAGTAGTTGTAGTGGGATGGAAGTGCTGAC  200

seq1  TTCCTCTTTTGTGCTGATGTTCTCCATCTCAGTTTCCCCAGTGAGTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTTGTGCTGATGTTCTCCATCTCAGTTTCCCCAGTGAGTAGTA  250

seq1  CACTGTCTGGATCAAAAGCCACTGTCCAGGAGTAGACCCGTCATGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTGGATCAAAAGCCACTGTCCAGGAGTAGACCCGTCATGAAAAT  300

seq1  GGGGCAAAAATCCACTATAAAAAATGATGATGACCCTCTAAGCTCTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAAATCCACTATAAAAAATGATGATGACCCTCTAAGCTCTAACT  350

seq1  ATGTAGGGAGTAAAGGGACAGAGAAGCGTTGTGTGTGGTGATGCTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGGAGTAAAGGGACAGAGAAGCGTTGTGTGTGGTGATGCTTTTGT  400

seq1  TGTTATGGGTGTGCGTGGAAAGAAGAGAACAGCAAGATTAATGATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGGTGTGCGTGGAAAGAAGAGAACAGCAAGATTAATGATTTTCA  450

seq1  ATGGGATGAAAGAAAGTAAAAGAGGGGTGTGCATAGAAGAGGAAATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGAAAGAAAGTAAAAGAGGGGTGTGCATAGAAGAGGAAATGGAA  500

seq1  GGAACAAGAAAGTGGGTGGGGGCCAGTGATAAGGGATGCTGGTTAGAG-A  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAACAAGAAAGTGGGTGGGGGCCAGTGATAAGGGATGCTGGTTAGAGAA  550

seq1  AAGACTA  556
      |||||||
seq2  AAGACTA  557

seq1: chr1_134639189_134639728
seq2: B6Ng01-030H19.g_69_609 (reverse)

seq1  AGCATCCCCCCC-AACCCACCTCTGCCTGTGGGCTCAGGAAAAGAGACGC  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCCCCCAAACCCACCTCTGCCTGTGGGCTCAGGAAAAGAGACGC  50

seq1  TGCAGATCACCCCCCTGCCCCACACATAGCCTGTGCTCAGTAAAGGCTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCACCCCCCTGCCCCACACATAGCCTGTGCTCAGTAAAGGCTCA  100

seq1  TCCACTCACTGACAAAATGGCCTCTCTTCAGCTAGGGGCTTCCAACCCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCACTGACAAAATGGCCTCTCTTCAGCTAGGGGCTTCCAACCCAA  150

seq1  CAGCTGCAGATGGGAGGCAAAGAGGAGGCAGGGAGGGAGGCCAGTTTTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGATGGGAGGCAAAGAGGAGGCAGGGAGGGAGGCCAGTTTTGA  200

seq1  AAGCCTTGAAGCAAGATTGTCAGAATCCTGGGCGATTTTTTTCAAGGTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGAAGCAAGATTGTCAGAATCCTGGGCGATTTTTTTCAAGGTTA  250

seq1  CTACATATACAAAGCAGCAAGTCACTTAAAACCAATACTTCAGCATCACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATACAAAGCAGCAAGTCACTTAAAACCAATACTTCAGCATCACC  300

seq1  CTGGTATTAGTCCTGAGAATGAGACTTCACCCTACCAGAACCAGATGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATTAGTCCTGAGAATGAGACTTCACCCTACCAGAACCAGATGACA  350

seq1  CTAAGGAGCCAGTCAACCCAACCAGAGGGATAGGGTCCCTGGACCCTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGCCAGTCAACCCAACCAGAGGGATAGGGTCCCTGGACCCTGGT  400

seq1  AGGTCCCAAACACCTGACAGACTCTTAGAAGACTTGGGGAAGGCACTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCAAACACCTGACAGACTCTTAGAAGACTTGGGGAAGGCACTTGA  450

seq1  AAGCACTCAGGTCTGTGTGGAGGGCAGAGTTCCCTCACCCCCCTTTACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCAGGTCTGTGTGGAGGGCAGAGTTCCCTCACCCCCCTTTACTA  500

seq1  AAAGCATCCAGTGGTGGCCTGGTCCCTGGAATAAAGAATTC  540
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCCAGTGGTGGCCTGGTCCCTGGAATAAAGAATTC  541